Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0628 and Synpcc7942_0629 overlap by 4 nucleotides Synpcc7942_0629 and Synpcc7942_0630 are separated by 91 nucleotides Synpcc7942_0630 and rplL are separated by 301 nucleotides rplL and rplJ are separated by 59 nucleotides
Synpcc7942_0628: Synpcc7942_0628 - spermidine synthase, at 621,277 to 622,137
_0628
Synpcc7942_0629: Synpcc7942_0629 - hypothetical protein, at 622,134 to 622,340
_0629
Synpcc7942_0630: Synpcc7942_0630 - hypothetical protein, at 622,432 to 623,574
_0630
Synpcc7942_0631: rplL - 50S ribosomal protein L7/L12, at 623,876 to 624,262
rplL
Synpcc7942_0632: rplJ - 50S ribosomal protein L10, at 624,322 to 624,849
rplJ
Position (kb)
622
623
624 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 621.657 kb on + strand, within Synpcc7942_0628 at 621.704 kb on + strand, within Synpcc7942_0628 at 621.712 kb on - strand, within Synpcc7942_0628 at 621.716 kb on - strand, within Synpcc7942_0628 at 621.821 kb on + strand, within Synpcc7942_0628 at 621.885 kb on + strand, within Synpcc7942_0628 at 621.930 kb on + strand, within Synpcc7942_0628 at 621.995 kb on + strand, within Synpcc7942_0628 at 622.093 kb on - strand at 622.113 kb on + strand at 622.122 kb on - strand at 622.126 kb on + strand at 622.140 kb on - strand at 622.163 kb on + strand, within Synpcc7942_0629 at 622.175 kb on - strand, within Synpcc7942_0629 at 622.200 kb on + strand, within Synpcc7942_0629 at 622.209 kb on + strand, within Synpcc7942_0629 at 622.216 kb on + strand, within Synpcc7942_0629 at 622.217 kb on - strand, within Synpcc7942_0629 at 622.217 kb on - strand, within Synpcc7942_0629 at 622.221 kb on + strand, within Synpcc7942_0629 at 622.222 kb on - strand, within Synpcc7942_0629 at 622.227 kb on - strand, within Synpcc7942_0629 at 622.250 kb on - strand at 622.262 kb on + strand, within Synpcc7942_0629 at 622.264 kb on + strand, within Synpcc7942_0629 at 622.272 kb on + strand, within Synpcc7942_0629 at 622.280 kb on - strand, within Synpcc7942_0629 at 622.310 kb on + strand, within Synpcc7942_0629 at 622.335 kb on + strand at 622.346 kb on + strand at 622.377 kb on - strand at 622.426 kb on + strand at 622.439 kb on + strand at 622.449 kb on + strand at 622.449 kb on + strand at 622.449 kb on + strand at 622.467 kb on - strand at 622.479 kb on + strand at 622.500 kb on - strand at 622.512 kb on - strand at 622.526 kb on - strand at 622.553 kb on + strand, within Synpcc7942_0630 at 622.556 kb on - strand, within Synpcc7942_0630 at 622.676 kb on + strand, within Synpcc7942_0630 at 622.684 kb on - strand at 622.708 kb on + strand, within Synpcc7942_0630 at 622.708 kb on + strand, within Synpcc7942_0630 at 622.708 kb on + strand, within Synpcc7942_0630 at 622.715 kb on + strand, within Synpcc7942_0630 at 622.716 kb on - strand, within Synpcc7942_0630 at 622.729 kb on - strand, within Synpcc7942_0630 at 622.742 kb on + strand, within Synpcc7942_0630 at 622.750 kb on - strand, within Synpcc7942_0630 at 622.761 kb on - strand, within Synpcc7942_0630 at 622.766 kb on + strand, within Synpcc7942_0630 at 622.766 kb on - strand, within Synpcc7942_0630 at 622.778 kb on + strand, within Synpcc7942_0630 at 622.788 kb on + strand, within Synpcc7942_0630 at 622.788 kb on + strand, within Synpcc7942_0630 at 622.808 kb on - strand, within Synpcc7942_0630 at 622.808 kb on - strand, within Synpcc7942_0630 at 622.812 kb on + strand, within Synpcc7942_0630 at 622.840 kb on + strand, within Synpcc7942_0630 at 622.842 kb on + strand, within Synpcc7942_0630 at 622.843 kb on - strand, within Synpcc7942_0630 at 622.847 kb on + strand, within Synpcc7942_0630 at 622.855 kb on - strand, within Synpcc7942_0630 at 622.872 kb on - strand, within Synpcc7942_0630 at 622.881 kb on + strand, within Synpcc7942_0630 at 622.942 kb on + strand, within Synpcc7942_0630 at 622.944 kb on + strand, within Synpcc7942_0630 at 622.975 kb on + strand, within Synpcc7942_0630 at 622.975 kb on - strand, within Synpcc7942_0630 at 622.998 kb on - strand, within Synpcc7942_0630 at 623.025 kb on - strand, within Synpcc7942_0630 at 623.045 kb on + strand, within Synpcc7942_0630 at 623.049 kb on + strand, within Synpcc7942_0630 at 623.069 kb on + strand, within Synpcc7942_0630 at 623.118 kb on + strand, within Synpcc7942_0630 at 623.157 kb on + strand, within Synpcc7942_0630 at 623.223 kb on + strand, within Synpcc7942_0630 at 623.223 kb on + strand, within Synpcc7942_0630 at 623.223 kb on - strand, within Synpcc7942_0630 at 623.226 kb on - strand, within Synpcc7942_0630 at 623.231 kb on - strand, within Synpcc7942_0630 at 623.256 kb on - strand, within Synpcc7942_0630 at 623.263 kb on - strand, within Synpcc7942_0630 at 623.280 kb on - strand, within Synpcc7942_0630 at 623.287 kb on - strand, within Synpcc7942_0630 at 623.287 kb on - strand, within Synpcc7942_0630 at 623.298 kb on + strand, within Synpcc7942_0630 at 623.330 kb on + strand, within Synpcc7942_0630 at 623.398 kb on + strand, within Synpcc7942_0630 at 623.403 kb on + strand, within Synpcc7942_0630 at 623.493 kb on - strand at 623.512 kb on + strand at 623.514 kb on - strand at 623.555 kb on + strand at 623.599 kb on + strand at 623.599 kb on + strand at 623.607 kb on - strand at 623.607 kb on - strand at 623.717 kb on - strand at 623.764 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 621,657 + Synpcc7942_0628 0.44 -1.3 621,704 + Synpcc7942_0628 0.50 -2.7 621,712 - Synpcc7942_0628 0.51 +0.3 621,716 - Synpcc7942_0628 0.51 -1.3 621,821 + Synpcc7942_0628 0.63 -1.3 621,885 + Synpcc7942_0628 0.71 -1.3 621,930 + Synpcc7942_0628 0.76 -0.7 621,995 + Synpcc7942_0628 0.83 -0.7 622,093 - -1.7 622,113 + -2.7 622,122 - -3.2 622,126 + -0.7 622,140 - +0.6 622,163 + Synpcc7942_0629 0.14 +0.7 622,175 - Synpcc7942_0629 0.20 +3.1 622,200 + Synpcc7942_0629 0.32 -2.1 622,209 + Synpcc7942_0629 0.36 +0.3 622,216 + Synpcc7942_0629 0.40 -1.5 622,217 - Synpcc7942_0629 0.40 +0.6 622,217 - Synpcc7942_0629 0.40 +0.7 622,221 + Synpcc7942_0629 0.42 -0.7 622,222 - Synpcc7942_0629 0.43 +0.6 622,227 - Synpcc7942_0629 0.45 +0.7 622,250 - +3.1 622,262 + Synpcc7942_0629 0.62 -2.3 622,264 + Synpcc7942_0629 0.63 +0.6 622,272 + Synpcc7942_0629 0.67 -1.3 622,280 - Synpcc7942_0629 0.71 +0.3 622,310 + Synpcc7942_0629 0.85 -0.5 622,335 + -0.7 622,346 + -0.3 622,377 - +0.4 622,426 + -1.3 622,439 + -3.4 622,449 + -4.2 622,449 + +0.3 622,449 + -3.6 622,467 - -3.4 622,479 + -3.6 622,500 - -4.3 622,512 - -2.3 622,526 - -1.7 622,553 + Synpcc7942_0630 0.11 -4.7 622,556 - Synpcc7942_0630 0.11 -2.5 622,676 + Synpcc7942_0630 0.21 -2.3 622,684 - -0.7 622,708 + Synpcc7942_0630 0.24 +1.6 622,708 + Synpcc7942_0630 0.24 -2.1 622,708 + Synpcc7942_0630 0.24 -2.0 622,715 + Synpcc7942_0630 0.25 -3.6 622,716 - Synpcc7942_0630 0.25 -2.1 622,729 - Synpcc7942_0630 0.26 -2.3 622,742 + Synpcc7942_0630 0.27 -2.3 622,750 - Synpcc7942_0630 0.28 -1.3 622,761 - Synpcc7942_0630 0.29 -3.1 622,766 + Synpcc7942_0630 0.29 -4.0 622,766 - Synpcc7942_0630 0.29 -2.5 622,778 + Synpcc7942_0630 0.30 -1.7 622,788 + Synpcc7942_0630 0.31 -1.7 622,788 + Synpcc7942_0630 0.31 +3.4 622,808 - Synpcc7942_0630 0.33 -2.3 622,808 - Synpcc7942_0630 0.33 -0.3 622,812 + Synpcc7942_0630 0.33 -1.9 622,840 + Synpcc7942_0630 0.36 -4.2 622,842 + Synpcc7942_0630 0.36 -2.1 622,843 - Synpcc7942_0630 0.36 -2.5 622,847 + Synpcc7942_0630 0.36 -0.7 622,855 - Synpcc7942_0630 0.37 -1.7 622,872 - Synpcc7942_0630 0.38 -0.7 622,881 + Synpcc7942_0630 0.39 -4.1 622,942 + Synpcc7942_0630 0.45 -3.3 622,944 + Synpcc7942_0630 0.45 -1.7 622,975 + Synpcc7942_0630 0.48 -3.2 622,975 - Synpcc7942_0630 0.48 +0.7 622,998 - Synpcc7942_0630 0.50 -2.1 623,025 - Synpcc7942_0630 0.52 -3.1 623,045 + Synpcc7942_0630 0.54 -0.7 623,049 + Synpcc7942_0630 0.54 +1.0 623,069 + Synpcc7942_0630 0.56 -3.2 623,118 + Synpcc7942_0630 0.60 -3.7 623,157 + Synpcc7942_0630 0.63 -1.7 623,223 + Synpcc7942_0630 0.69 -4.9 623,223 + Synpcc7942_0630 0.69 -2.7 623,223 - Synpcc7942_0630 0.69 -2.1 623,226 - Synpcc7942_0630 0.69 -0.7 623,231 - Synpcc7942_0630 0.70 -0.7 623,256 - Synpcc7942_0630 0.72 -1.7 623,263 - Synpcc7942_0630 0.73 -3.3 623,280 - Synpcc7942_0630 0.74 -1.7 623,287 - Synpcc7942_0630 0.75 -0.7 623,287 - Synpcc7942_0630 0.75 -2.5 623,298 + Synpcc7942_0630 0.76 +0.5 623,330 + Synpcc7942_0630 0.79 -2.9 623,398 + Synpcc7942_0630 0.85 -2.5 623,403 + Synpcc7942_0630 0.85 +0.3 623,493 - -3.5 623,512 + -2.9 623,514 - -1.7 623,555 + -1.7 623,599 + -1.3 623,599 + +2.1 623,607 - +0.2 623,607 - +1.6 623,717 - -1.5 623,764 + -1.7
Or see this region's nucleotide sequence