Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cscK and Synpcc7942_0117 are separated by 117 nucleotides Synpcc7942_0117 and gatB are separated by 220 nucleotides
Synpcc7942_0116: cscK - fructokinase, at 114,299 to 115,273
cscK
Synpcc7942_0117: Synpcc7942_0117 - thiol methyltransferase 1-like, at 115,391 to 116,722
_0117
Synpcc7942_0118: gatB - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 116,943 to 118,427
gatB
Position (kb)
115
116
117 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 114.391 kb on + strand at 114.393 kb on - strand at 114.399 kb on - strand, within cscK at 114.450 kb on - strand, within cscK at 114.477 kb on - strand, within cscK at 114.491 kb on - strand, within cscK at 114.491 kb on - strand, within cscK at 114.491 kb on - strand, within cscK at 114.518 kb on + strand, within cscK at 114.518 kb on + strand, within cscK at 114.538 kb on - strand, within cscK at 114.548 kb on + strand, within cscK at 114.548 kb on + strand, within cscK at 114.556 kb on - strand, within cscK at 114.580 kb on + strand, within cscK at 114.588 kb on - strand, within cscK at 114.605 kb on + strand, within cscK at 114.624 kb on + strand, within cscK at 114.715 kb on + strand, within cscK at 114.717 kb on + strand, within cscK at 114.725 kb on - strand, within cscK at 114.745 kb on - strand, within cscK at 114.750 kb on - strand, within cscK at 114.750 kb on - strand, within cscK at 114.801 kb on - strand, within cscK at 114.803 kb on - strand, within cscK at 114.812 kb on + strand, within cscK at 115.021 kb on - strand, within cscK at 115.124 kb on + strand, within cscK at 115.146 kb on + strand, within cscK at 115.172 kb on + strand, within cscK at 116.040 kb on + strand, within Synpcc7942_0117 at 116.268 kb on - strand, within Synpcc7942_0117 at 116.279 kb on - strand, within Synpcc7942_0117 at 116.280 kb on - strand, within Synpcc7942_0117 at 116.439 kb on - strand, within Synpcc7942_0117 at 116.520 kb on + strand, within Synpcc7942_0117 at 116.576 kb on - strand, within Synpcc7942_0117 at 116.685 kb on + strand at 116.688 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.770 kb on + strand at 116.778 kb on - strand at 116.778 kb on - strand at 116.778 kb on - strand at 116.778 kb on - strand at 116.778 kb on - strand at 116.824 kb on - strand at 116.897 kb on + strand at 116.897 kb on + strand at 116.902 kb on + strand at 116.905 kb on - strand at 116.905 kb on - strand at 116.910 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 114,391 + -0.9 114,393 - +2.2 114,399 - cscK Synpcc7942_0116 0.10 -1.0 114,450 - cscK Synpcc7942_0116 0.15 +0.8 114,477 - cscK Synpcc7942_0116 0.18 +0.0 114,491 - cscK Synpcc7942_0116 0.20 -2.8 114,491 - cscK Synpcc7942_0116 0.20 +2.3 114,491 - cscK Synpcc7942_0116 0.20 +0.2 114,518 + cscK Synpcc7942_0116 0.22 -1.5 114,518 + cscK Synpcc7942_0116 0.22 -1.7 114,538 - cscK Synpcc7942_0116 0.25 -1.6 114,548 + cscK Synpcc7942_0116 0.26 -0.5 114,548 + cscK Synpcc7942_0116 0.26 +0.3 114,556 - cscK Synpcc7942_0116 0.26 -1.2 114,580 + cscK Synpcc7942_0116 0.29 +1.0 114,588 - cscK Synpcc7942_0116 0.30 -2.9 114,605 + cscK Synpcc7942_0116 0.31 +0.7 114,624 + cscK Synpcc7942_0116 0.33 -2.3 114,715 + cscK Synpcc7942_0116 0.43 -3.8 114,717 + cscK Synpcc7942_0116 0.43 +2.0 114,725 - cscK Synpcc7942_0116 0.44 +0.4 114,745 - cscK Synpcc7942_0116 0.46 +2.1 114,750 - cscK Synpcc7942_0116 0.46 -0.7 114,750 - cscK Synpcc7942_0116 0.46 -0.5 114,801 - cscK Synpcc7942_0116 0.51 +0.9 114,803 - cscK Synpcc7942_0116 0.52 +1.3 114,812 + cscK Synpcc7942_0116 0.53 -0.7 115,021 - cscK Synpcc7942_0116 0.74 +0.9 115,124 + cscK Synpcc7942_0116 0.85 -0.9 115,146 + cscK Synpcc7942_0116 0.87 -1.9 115,172 + cscK Synpcc7942_0116 0.90 -1.3 116,040 + Synpcc7942_0117 0.49 -2.7 116,268 - Synpcc7942_0117 0.66 -0.4 116,279 - Synpcc7942_0117 0.67 +0.4 116,280 - Synpcc7942_0117 0.67 +0.7 116,439 - Synpcc7942_0117 0.79 +1.2 116,520 + Synpcc7942_0117 0.85 -0.7 116,576 - Synpcc7942_0117 0.89 +1.5 116,685 + +0.3 116,688 + +0.5 116,770 + +0.9 116,770 + +0.2 116,770 + -0.1 116,770 + -0.9 116,770 + +0.3 116,770 + +1.7 116,778 - -1.7 116,778 - +0.1 116,778 - +1.3 116,778 - -0.3 116,778 - +0.1 116,824 - -0.3 116,897 + +0.3 116,897 + -1.6 116,902 + +1.4 116,905 - +0.4 116,905 - +0.8 116,910 - +0.4
Or see this region's nucleotide sequence