Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0117

Experiment: Bacitracin 0.0009765625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcscK and Synpcc7942_0117 are separated by 117 nucleotidesSynpcc7942_0117 and gatB are separated by 220 nucleotides Synpcc7942_0116: cscK - fructokinase, at 114,299 to 115,273 cscK Synpcc7942_0117: Synpcc7942_0117 - thiol methyltransferase 1-like, at 115,391 to 116,722 _0117 Synpcc7942_0118: gatB - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 116,943 to 118,427 gatB Position (kb) 115 116 117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 114.391 kb on + strandat 114.393 kb on - strandat 114.399 kb on - strand, within cscKat 114.450 kb on - strand, within cscKat 114.477 kb on - strand, within cscKat 114.491 kb on - strand, within cscKat 114.491 kb on - strand, within cscKat 114.491 kb on - strand, within cscKat 114.518 kb on + strand, within cscKat 114.518 kb on + strand, within cscKat 114.538 kb on - strand, within cscKat 114.548 kb on + strand, within cscKat 114.548 kb on + strand, within cscKat 114.556 kb on - strand, within cscKat 114.580 kb on + strand, within cscKat 114.588 kb on - strand, within cscKat 114.605 kb on + strand, within cscKat 114.624 kb on + strand, within cscKat 114.715 kb on + strand, within cscKat 114.717 kb on + strand, within cscKat 114.725 kb on - strand, within cscKat 114.745 kb on - strand, within cscKat 114.750 kb on - strand, within cscKat 114.750 kb on - strand, within cscKat 114.801 kb on - strand, within cscKat 114.803 kb on - strand, within cscKat 114.812 kb on + strand, within cscKat 115.021 kb on - strand, within cscKat 115.124 kb on + strand, within cscKat 115.146 kb on + strand, within cscKat 115.172 kb on + strand, within cscKat 116.040 kb on + strand, within Synpcc7942_0117at 116.268 kb on - strand, within Synpcc7942_0117at 116.279 kb on - strand, within Synpcc7942_0117at 116.280 kb on - strand, within Synpcc7942_0117at 116.439 kb on - strand, within Synpcc7942_0117at 116.520 kb on + strand, within Synpcc7942_0117at 116.576 kb on - strand, within Synpcc7942_0117at 116.685 kb on + strandat 116.688 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.778 kb on - strandat 116.778 kb on - strandat 116.778 kb on - strandat 116.778 kb on - strandat 116.778 kb on - strandat 116.824 kb on - strandat 116.897 kb on + strandat 116.897 kb on + strandat 116.902 kb on + strandat 116.905 kb on - strandat 116.905 kb on - strandat 116.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml
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114,391 + -0.9
114,393 - +2.2
114,399 - cscK Synpcc7942_0116 0.10 -1.0
114,450 - cscK Synpcc7942_0116 0.15 +0.8
114,477 - cscK Synpcc7942_0116 0.18 +0.0
114,491 - cscK Synpcc7942_0116 0.20 -2.8
114,491 - cscK Synpcc7942_0116 0.20 +2.3
114,491 - cscK Synpcc7942_0116 0.20 +0.2
114,518 + cscK Synpcc7942_0116 0.22 -1.5
114,518 + cscK Synpcc7942_0116 0.22 -1.7
114,538 - cscK Synpcc7942_0116 0.25 -1.6
114,548 + cscK Synpcc7942_0116 0.26 -0.5
114,548 + cscK Synpcc7942_0116 0.26 +0.3
114,556 - cscK Synpcc7942_0116 0.26 -1.2
114,580 + cscK Synpcc7942_0116 0.29 +1.0
114,588 - cscK Synpcc7942_0116 0.30 -2.9
114,605 + cscK Synpcc7942_0116 0.31 +0.7
114,624 + cscK Synpcc7942_0116 0.33 -2.3
114,715 + cscK Synpcc7942_0116 0.43 -3.8
114,717 + cscK Synpcc7942_0116 0.43 +2.0
114,725 - cscK Synpcc7942_0116 0.44 +0.4
114,745 - cscK Synpcc7942_0116 0.46 +2.1
114,750 - cscK Synpcc7942_0116 0.46 -0.7
114,750 - cscK Synpcc7942_0116 0.46 -0.5
114,801 - cscK Synpcc7942_0116 0.51 +0.9
114,803 - cscK Synpcc7942_0116 0.52 +1.3
114,812 + cscK Synpcc7942_0116 0.53 -0.7
115,021 - cscK Synpcc7942_0116 0.74 +0.9
115,124 + cscK Synpcc7942_0116 0.85 -0.9
115,146 + cscK Synpcc7942_0116 0.87 -1.9
115,172 + cscK Synpcc7942_0116 0.90 -1.3
116,040 + Synpcc7942_0117 0.49 -2.7
116,268 - Synpcc7942_0117 0.66 -0.4
116,279 - Synpcc7942_0117 0.67 +0.4
116,280 - Synpcc7942_0117 0.67 +0.7
116,439 - Synpcc7942_0117 0.79 +1.2
116,520 + Synpcc7942_0117 0.85 -0.7
116,576 - Synpcc7942_0117 0.89 +1.5
116,685 + +0.3
116,688 + +0.5
116,770 + +0.9
116,770 + +0.2
116,770 + -0.1
116,770 + -0.9
116,770 + +0.3
116,770 + +1.7
116,778 - -1.7
116,778 - +0.1
116,778 - +1.3
116,778 - -0.3
116,778 - +0.1
116,824 - -0.3
116,897 + +0.3
116,897 + -1.6
116,902 + +1.4
116,905 - +0.4
116,905 - +0.8
116,910 - +0.4

Or see this region's nucleotide sequence