Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1472

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1471 and Ac3H11_1472 overlap by 29 nucleotidesAc3H11_1472 and Ac3H11_1473 are separated by 122 nucleotidesAc3H11_1473 and Ac3H11_1474 are separated by 75 nucleotides Ac3H11_1471 - periplasmic sensor hybrid histidine kinase, at 50,002 to 51,894 _1471 Ac3H11_1472 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 51,866 to 53,305 _1472 Ac3H11_1473 - hypothetical protein, at 53,428 to 53,781 _1473 Ac3H11_1474 - ClpB protein, at 53,857 to 56,463 _1474 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2 3at 50.896 kb on + strand, within Ac3H11_1471at 50.897 kb on - strand, within Ac3H11_1471at 50.897 kb on - strand, within Ac3H11_1471at 50.897 kb on - strand, within Ac3H11_1471at 51.013 kb on + strand, within Ac3H11_1471at 51.013 kb on + strand, within Ac3H11_1471at 51.014 kb on - strand, within Ac3H11_1471at 51.014 kb on - strand, within Ac3H11_1471at 51.014 kb on - strand, within Ac3H11_1471at 51.014 kb on - strand, within Ac3H11_1471at 51.104 kb on - strand, within Ac3H11_1471at 51.643 kb on + strand, within Ac3H11_1471at 51.644 kb on - strand, within Ac3H11_1471at 51.644 kb on - strand, within Ac3H11_1471at 51.644 kb on - strand, within Ac3H11_1471at 51.644 kb on - strand, within Ac3H11_1471at 51.867 kb on + strandat 51.867 kb on + strandat 51.868 kb on - strandat 51.916 kb on - strandat 51.924 kb on + strandat 51.924 kb on + strandat 52.009 kb on - strandat 52.009 kb on - strandat 52.152 kb on + strand, within Ac3H11_1472at 52.153 kb on - strand, within Ac3H11_1472at 52.455 kb on + strand, within Ac3H11_1472at 52.455 kb on + strand, within Ac3H11_1472at 52.506 kb on + strand, within Ac3H11_1472at 52.506 kb on + strand, within Ac3H11_1472at 52.551 kb on + strand, within Ac3H11_1472at 52.551 kb on + strand, within Ac3H11_1472at 52.551 kb on + strand, within Ac3H11_1472at 52.552 kb on - strand, within Ac3H11_1472at 52.552 kb on - strand, within Ac3H11_1472at 52.552 kb on - strand, within Ac3H11_1472at 52.552 kb on - strand, within Ac3H11_1472at 52.552 kb on - strand, within Ac3H11_1472at 52.552 kb on - strand, within Ac3H11_1472at 52.950 kb on + strand, within Ac3H11_1472at 52.950 kb on + strand, within Ac3H11_1472at 52.950 kb on + strand, within Ac3H11_1472at 52.950 kb on + strand, within Ac3H11_1472at 52.951 kb on - strand, within Ac3H11_1472at 53.022 kb on + strand, within Ac3H11_1472at 53.023 kb on - strand, within Ac3H11_1472at 53.023 kb on - strand, within Ac3H11_1472at 53.023 kb on - strand, within Ac3H11_1472at 53.565 kb on + strand, within Ac3H11_1473at 53.611 kb on - strandat 53.611 kb on - strand, within Ac3H11_1473at 53.611 kb on - strand, within Ac3H11_1473at 53.737 kb on + strand, within Ac3H11_1473at 53.737 kb on + strand, within Ac3H11_1473at 53.737 kb on + strand, within Ac3H11_1473at 53.738 kb on - strand, within Ac3H11_1473at 53.738 kb on - strand, within Ac3H11_1473at 53.738 kb on - strand, within Ac3H11_1473at 53.738 kb on - strand, within Ac3H11_1473at 53.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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50,896 + Ac3H11_1471 0.47 +0.1
50,897 - Ac3H11_1471 0.47 -0.1
50,897 - Ac3H11_1471 0.47 -0.6
50,897 - Ac3H11_1471 0.47 -0.2
51,013 + Ac3H11_1471 0.53 +0.3
51,013 + Ac3H11_1471 0.53 -0.5
51,014 - Ac3H11_1471 0.53 -0.2
51,014 - Ac3H11_1471 0.53 +0.2
51,014 - Ac3H11_1471 0.53 -0.0
51,014 - Ac3H11_1471 0.53 -0.2
51,104 - Ac3H11_1471 0.58 +1.4
51,643 + Ac3H11_1471 0.87 +0.6
51,644 - Ac3H11_1471 0.87 -0.5
51,644 - Ac3H11_1471 0.87 -0.3
51,644 - Ac3H11_1471 0.87 -0.1
51,644 - Ac3H11_1471 0.87 +0.8
51,867 + +0.6
51,867 + -0.5
51,868 - +0.2
51,916 - +1.3
51,924 + +0.3
51,924 + -0.2
52,009 - +0.0
52,009 - -1.6
52,152 + Ac3H11_1472 0.20 -0.2
52,153 - Ac3H11_1472 0.20 -0.6
52,455 + Ac3H11_1472 0.41 -0.3
52,455 + Ac3H11_1472 0.41 -0.6
52,506 + Ac3H11_1472 0.44 -0.2
52,506 + Ac3H11_1472 0.44 -0.3
52,551 + Ac3H11_1472 0.48 -1.4
52,551 + Ac3H11_1472 0.48 -0.8
52,551 + Ac3H11_1472 0.48 +0.9
52,552 - Ac3H11_1472 0.48 +1.4
52,552 - Ac3H11_1472 0.48 -0.3
52,552 - Ac3H11_1472 0.48 -1.3
52,552 - Ac3H11_1472 0.48 -1.0
52,552 - Ac3H11_1472 0.48 -0.5
52,552 - Ac3H11_1472 0.48 -0.5
52,950 + Ac3H11_1472 0.75 -0.7
52,950 + Ac3H11_1472 0.75 -0.5
52,950 + Ac3H11_1472 0.75 -1.1
52,950 + Ac3H11_1472 0.75 +1.2
52,951 - Ac3H11_1472 0.75 -0.8
53,022 + Ac3H11_1472 0.80 -0.9
53,023 - Ac3H11_1472 0.80 -2.1
53,023 - Ac3H11_1472 0.80 -0.1
53,023 - Ac3H11_1472 0.80 -0.8
53,565 + Ac3H11_1473 0.39 -0.1
53,611 - +3.0
53,611 - Ac3H11_1473 0.52 +1.1
53,611 - Ac3H11_1473 0.52 +0.0
53,737 + Ac3H11_1473 0.87 +0.6
53,737 + Ac3H11_1473 0.87 -0.7
53,737 + Ac3H11_1473 0.87 -0.0
53,738 - Ac3H11_1473 0.88 -0.1
53,738 - Ac3H11_1473 0.88 +0.4
53,738 - Ac3H11_1473 0.88 +0.2
53,738 - Ac3H11_1473 0.88 +0.8
53,835 - +0.4

Or see this region's nucleotide sequence