Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.231.1 and Xcc-8004.232.1 are separated by 15 nucleotides Xcc-8004.232.1 and Xcc-8004.233.1 are separated by 3 nucleotides Xcc-8004.233.1 and Xcc-8004.234.1 overlap by 4 nucleotides
Xcc-8004.231.1: Xcc-8004.231.1 - partition protein, at 228,973 to 229,605
Xcc-8004.231.1
Xcc-8004.232.1: Xcc-8004.232.1 - Phosphohistidine phosphatase SixA, at 229,621 to 230,097
Xcc-8004.232.1
Xcc-8004.233.1: Xcc-8004.233.1 - FIG01211637: hypothetical protein, at 230,101 to 230,673
Xcc-8004.233.1
Xcc-8004.234.1: Xcc-8004.234.1 - cardiolipin synthase, at 230,670 to 232,652
Xcc-8004.234.1
Position (kb) 230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 229.459 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.495 kb on + strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.496 kb on - strand, within Xcc-8004.231.1 at 229.603 kb on + strand at 229.603 kb on + strand at 229.603 kb on + strand at 229.603 kb on + strand at 229.603 kb on + strand at 229.603 kb on + strand at 229.604 kb on - strand at 229.604 kb on - strand at 229.620 kb on + strand at 229.620 kb on + strand at 229.620 kb on + strand at 229.621 kb on - strand at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.864 kb on + strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.865 kb on - strand, within Xcc-8004.232.1 at 229.996 kb on + strand, within Xcc-8004.232.1 at 229.996 kb on + strand, within Xcc-8004.232.1 at 229.996 kb on + strand, within Xcc-8004.232.1 at 229.997 kb on - strand, within Xcc-8004.232.1 at 230.353 kb on + strand, within Xcc-8004.233.1 at 230.353 kb on + strand, within Xcc-8004.233.1 at 230.353 kb on + strand, within Xcc-8004.233.1 at 230.354 kb on - strand, within Xcc-8004.233.1 at 230.354 kb on - strand, within Xcc-8004.233.1 at 230.354 kb on - strand, within Xcc-8004.233.1 at 230.398 kb on + strand, within Xcc-8004.233.1 at 230.542 kb on + strand, within Xcc-8004.233.1 at 230.542 kb on + strand, within Xcc-8004.233.1 at 230.542 kb on + strand, within Xcc-8004.233.1 at 230.542 kb on + strand, within Xcc-8004.233.1 at 230.543 kb on - strand, within Xcc-8004.233.1 at 230.568 kb on + strand, within Xcc-8004.233.1 at 230.568 kb on + strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.569 kb on - strand, within Xcc-8004.233.1 at 230.982 kb on + strand, within Xcc-8004.234.1 at 230.982 kb on + strand, within Xcc-8004.234.1 at 230.983 kb on - strand, within Xcc-8004.234.1 at 230.983 kb on - strand, within Xcc-8004.234.1 at 230.983 kb on - strand, within Xcc-8004.234.1 at 230.983 kb on - strand, within Xcc-8004.234.1 at 230.983 kb on - strand, within Xcc-8004.234.1 at 230.983 kb on - strand, within Xcc-8004.234.1 at 230.983 kb on - strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.150 kb on + strand, within Xcc-8004.234.1 at 231.151 kb on - strand, within Xcc-8004.234.1 at 231.151 kb on - strand, within Xcc-8004.234.1 at 231.151 kb on - strand, within Xcc-8004.234.1 at 231.151 kb on - strand, within Xcc-8004.234.1 at 231.151 kb on - strand, within Xcc-8004.234.1 at 231.151 kb on - strand, within Xcc-8004.234.1 at 231.151 kb on - strand, within Xcc-8004.234.1 at 231.183 kb on + strand, within Xcc-8004.234.1 at 231.183 kb on + strand, within Xcc-8004.234.1 at 231.183 kb on + strand, within Xcc-8004.234.1 at 231.183 kb on + strand, within Xcc-8004.234.1 at 231.183 kb on + strand, within Xcc-8004.234.1 at 231.183 kb on + strand, within Xcc-8004.234.1 at 231.184 kb on - strand, within Xcc-8004.234.1 at 231.184 kb on - strand, within Xcc-8004.234.1 at 231.294 kb on + strand, within Xcc-8004.234.1 at 231.295 kb on - strand, within Xcc-8004.234.1 at 231.295 kb on - strand, within Xcc-8004.234.1 at 231.295 kb on - strand, within Xcc-8004.234.1 at 231.306 kb on + strand, within Xcc-8004.234.1 at 231.307 kb on - strand, within Xcc-8004.234.1 at 231.328 kb on - strand, within Xcc-8004.234.1 at 231.586 kb on + strand, within Xcc-8004.234.1 at 231.586 kb on + strand, within Xcc-8004.234.1 at 231.600 kb on + strand, within Xcc-8004.234.1 at 231.600 kb on + strand, within Xcc-8004.234.1 at 231.600 kb on + strand, within Xcc-8004.234.1 at 231.600 kb on + strand, within Xcc-8004.234.1 at 231.600 kb on + strand, within Xcc-8004.234.1 at 231.600 kb on + strand, within Xcc-8004.234.1 at 231.600 kb on + strand, within Xcc-8004.234.1 at 231.600 kb on + strand, within Xcc-8004.234.1 at 231.601 kb on - strand, within Xcc-8004.234.1 at 231.601 kb on - strand, within Xcc-8004.234.1 at 231.601 kb on - strand, within Xcc-8004.234.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 229,459 + Xcc-8004.231.1 0.77 +0.9 229,495 + Xcc-8004.231.1 0.82 -1.1 229,495 + Xcc-8004.231.1 0.82 +0.5 229,495 + Xcc-8004.231.1 0.82 +0.3 229,495 + Xcc-8004.231.1 0.82 -0.9 229,495 + Xcc-8004.231.1 0.82 -0.3 229,495 + Xcc-8004.231.1 0.82 +0.7 229,495 + Xcc-8004.231.1 0.82 +0.4 229,495 + Xcc-8004.231.1 0.82 +0.5 229,495 + Xcc-8004.231.1 0.82 -1.5 229,495 + Xcc-8004.231.1 0.82 -0.4 229,495 + Xcc-8004.231.1 0.82 -0.1 229,495 + Xcc-8004.231.1 0.82 -0.0 229,495 + Xcc-8004.231.1 0.82 +0.1 229,495 + Xcc-8004.231.1 0.82 -0.1 229,495 + Xcc-8004.231.1 0.82 -1.2 229,495 + Xcc-8004.231.1 0.82 -0.9 229,495 + Xcc-8004.231.1 0.82 +0.3 229,495 + Xcc-8004.231.1 0.82 -0.1 229,495 + Xcc-8004.231.1 0.82 +0.7 229,496 - Xcc-8004.231.1 0.83 +0.2 229,496 - Xcc-8004.231.1 0.83 +0.6 229,496 - Xcc-8004.231.1 0.83 +0.5 229,496 - Xcc-8004.231.1 0.83 -0.1 229,496 - Xcc-8004.231.1 0.83 +0.3 229,496 - Xcc-8004.231.1 0.83 -0.0 229,496 - Xcc-8004.231.1 0.83 -0.7 229,496 - Xcc-8004.231.1 0.83 -0.9 229,496 - Xcc-8004.231.1 0.83 -1.5 229,496 - Xcc-8004.231.1 0.83 +1.6 229,496 - Xcc-8004.231.1 0.83 -2.9 229,496 - Xcc-8004.231.1 0.83 +0.4 229,496 - Xcc-8004.231.1 0.83 -0.4 229,496 - Xcc-8004.231.1 0.83 +0.8 229,496 - Xcc-8004.231.1 0.83 +0.3 229,496 - Xcc-8004.231.1 0.83 -0.7 229,496 - Xcc-8004.231.1 0.83 -0.3 229,603 + +0.6 229,603 + -0.1 229,603 + -1.1 229,603 + -0.1 229,603 + -1.1 229,603 + +0.9 229,604 - +0.2 229,604 - -1.1 229,620 + +0.1 229,620 + +1.5 229,620 + +0.2 229,621 - +0.7 229,864 + Xcc-8004.232.1 0.51 +0.9 229,864 + Xcc-8004.232.1 0.51 +1.5 229,864 + Xcc-8004.232.1 0.51 -1.0 229,864 + Xcc-8004.232.1 0.51 -1.0 229,864 + Xcc-8004.232.1 0.51 +2.5 229,864 + Xcc-8004.232.1 0.51 -0.5 229,865 - Xcc-8004.232.1 0.51 +0.2 229,865 - Xcc-8004.232.1 0.51 +0.9 229,865 - Xcc-8004.232.1 0.51 -1.1 229,865 - Xcc-8004.232.1 0.51 -1.1 229,865 - Xcc-8004.232.1 0.51 +0.9 229,865 - Xcc-8004.232.1 0.51 -1.8 229,865 - Xcc-8004.232.1 0.51 -0.3 229,865 - Xcc-8004.232.1 0.51 +0.6 229,865 - Xcc-8004.232.1 0.51 -0.9 229,865 - Xcc-8004.232.1 0.51 -1.4 229,865 - Xcc-8004.232.1 0.51 -0.9 229,996 + Xcc-8004.232.1 0.79 +0.9 229,996 + Xcc-8004.232.1 0.79 -0.7 229,996 + Xcc-8004.232.1 0.79 -1.4 229,997 - Xcc-8004.232.1 0.79 -0.4 230,353 + Xcc-8004.233.1 0.44 +0.7 230,353 + Xcc-8004.233.1 0.44 -0.1 230,353 + Xcc-8004.233.1 0.44 +0.5 230,354 - Xcc-8004.233.1 0.44 -0.4 230,354 - Xcc-8004.233.1 0.44 -0.1 230,354 - Xcc-8004.233.1 0.44 +0.9 230,398 + Xcc-8004.233.1 0.52 -0.7 230,542 + Xcc-8004.233.1 0.77 -1.0 230,542 + Xcc-8004.233.1 0.77 -1.0 230,542 + Xcc-8004.233.1 0.77 -1.7 230,542 + Xcc-8004.233.1 0.77 +0.7 230,543 - Xcc-8004.233.1 0.77 +0.1 230,568 + Xcc-8004.233.1 0.82 +2.9 230,568 + Xcc-8004.233.1 0.82 +0.3 230,569 - Xcc-8004.233.1 0.82 -0.7 230,569 - Xcc-8004.233.1 0.82 +0.1 230,569 - Xcc-8004.233.1 0.82 +0.1 230,569 - Xcc-8004.233.1 0.82 -0.1 230,569 - Xcc-8004.233.1 0.82 -0.4 230,569 - Xcc-8004.233.1 0.82 -0.3 230,569 - Xcc-8004.233.1 0.82 +0.6 230,982 + Xcc-8004.234.1 0.16 -1.1 230,982 + Xcc-8004.234.1 0.16 -1.1 230,983 - Xcc-8004.234.1 0.16 -0.7 230,983 - Xcc-8004.234.1 0.16 -0.1 230,983 - Xcc-8004.234.1 0.16 -0.1 230,983 - Xcc-8004.234.1 0.16 -1.1 230,983 - Xcc-8004.234.1 0.16 +0.9 230,983 - Xcc-8004.234.1 0.16 -0.7 230,983 - Xcc-8004.234.1 0.16 -0.4 231,150 + Xcc-8004.234.1 0.24 -1.1 231,150 + Xcc-8004.234.1 0.24 -0.6 231,150 + Xcc-8004.234.1 0.24 -1.4 231,150 + Xcc-8004.234.1 0.24 +0.9 231,150 + Xcc-8004.234.1 0.24 -0.1 231,150 + Xcc-8004.234.1 0.24 -2.1 231,150 + Xcc-8004.234.1 0.24 -0.7 231,150 + Xcc-8004.234.1 0.24 -1.1 231,150 + Xcc-8004.234.1 0.24 -1.1 231,150 + Xcc-8004.234.1 0.24 -0.1 231,151 - Xcc-8004.234.1 0.24 -1.7 231,151 - Xcc-8004.234.1 0.24 -1.8 231,151 - Xcc-8004.234.1 0.24 +1.5 231,151 - Xcc-8004.234.1 0.24 -2.1 231,151 - Xcc-8004.234.1 0.24 -2.1 231,151 - Xcc-8004.234.1 0.24 -0.1 231,151 - Xcc-8004.234.1 0.24 -1.7 231,183 + Xcc-8004.234.1 0.26 -0.7 231,183 + Xcc-8004.234.1 0.26 +0.3 231,183 + Xcc-8004.234.1 0.26 -1.3 231,183 + Xcc-8004.234.1 0.26 -0.6 231,183 + Xcc-8004.234.1 0.26 -0.7 231,183 + Xcc-8004.234.1 0.26 -1.7 231,184 - Xcc-8004.234.1 0.26 -0.4 231,184 - Xcc-8004.234.1 0.26 -0.9 231,294 + Xcc-8004.234.1 0.31 -1.4 231,295 - Xcc-8004.234.1 0.32 -0.3 231,295 - Xcc-8004.234.1 0.32 -0.4 231,295 - Xcc-8004.234.1 0.32 +1.6 231,306 + Xcc-8004.234.1 0.32 +0.1 231,307 - Xcc-8004.234.1 0.32 +0.3 231,328 - Xcc-8004.234.1 0.33 -1.4 231,586 + Xcc-8004.234.1 0.46 -0.7 231,586 + Xcc-8004.234.1 0.46 +0.9 231,600 + Xcc-8004.234.1 0.47 -1.7 231,600 + Xcc-8004.234.1 0.47 -0.1 231,600 + Xcc-8004.234.1 0.47 -0.7 231,600 + Xcc-8004.234.1 0.47 -1.7 231,600 + Xcc-8004.234.1 0.47 -1.1 231,600 + Xcc-8004.234.1 0.47 +0.3 231,600 + Xcc-8004.234.1 0.47 +0.7 231,600 + Xcc-8004.234.1 0.47 -1.1 231,601 - Xcc-8004.234.1 0.47 -0.1 231,601 - Xcc-8004.234.1 0.47 -1.3 231,601 - Xcc-8004.234.1 0.47 -0.8
Or see this region's nucleotide sequence