Experiment: Phosphomycin 0.0015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0296 and ftsH are separated by 106 nucleotides ftsH and Synpcc7942_0298 are separated by 266 nucleotides Synpcc7942_0298 and mreC overlap by 4 nucleotides
Synpcc7942_0296: Synpcc7942_0296 - hypothetical protein, at 292,750 to 294,765
_0296
Synpcc7942_0297: ftsH - FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41, at 294,872 to 296,713
ftsH
Synpcc7942_0298: Synpcc7942_0298 - hypothetical protein, at 296,980 to 297,627
_0298
Synpcc7942_0299: mreC - rod shape-determining protein MreC, at 297,624 to 298,373
mreC
Position (kb) 294
295
296
297 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 293.939 kb on + strand, within Synpcc7942_0296 at 294.064 kb on - strand, within Synpcc7942_0296 at 294.142 kb on + strand, within Synpcc7942_0296 at 294.153 kb on + strand, within Synpcc7942_0296 at 294.161 kb on - strand, within Synpcc7942_0296 at 294.236 kb on - strand, within Synpcc7942_0296 at 294.390 kb on - strand, within Synpcc7942_0296 at 294.393 kb on + strand, within Synpcc7942_0296 at 294.403 kb on + strand, within Synpcc7942_0296 at 294.475 kb on + strand, within Synpcc7942_0296 at 294.483 kb on - strand, within Synpcc7942_0296 at 294.612 kb on + strand at 294.620 kb on - strand at 294.669 kb on - strand at 294.682 kb on + strand at 294.751 kb on + strand at 296.794 kb on + strand at 296.802 kb on - strand at 296.850 kb on + strand at 296.899 kb on + strand at 296.920 kb on - strand at 296.922 kb on + strand at 296.922 kb on + strand at 296.939 kb on - strand at 296.942 kb on - strand at 296.986 kb on - strand at 296.988 kb on - strand at 296.988 kb on - strand at 297.580 kb on + strand at 297.598 kb on - strand at 297.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.0015625 mg/ml remove 293,939 + Synpcc7942_0296 0.59 -0.1 294,064 - Synpcc7942_0296 0.65 -5.5 294,142 + Synpcc7942_0296 0.69 -0.1 294,153 + Synpcc7942_0296 0.70 -3.3 294,161 - Synpcc7942_0296 0.70 -2.4 294,236 - Synpcc7942_0296 0.74 +0.5 294,390 - Synpcc7942_0296 0.81 -2.1 294,393 + Synpcc7942_0296 0.81 -1.1 294,403 + Synpcc7942_0296 0.82 -1.4 294,475 + Synpcc7942_0296 0.86 -1.4 294,483 - Synpcc7942_0296 0.86 -4.0 294,612 + -0.1 294,620 - -1.7 294,669 - -2.1 294,682 + -1.3 294,751 + -2.8 296,794 + -0.5 296,802 - +0.7 296,850 + +0.3 296,899 + +0.9 296,920 - +1.0 296,922 + +1.1 296,922 + +0.4 296,939 - +0.4 296,942 - +1.7 296,986 - -0.7 296,988 - -0.5 296,988 - +0.1 297,580 + +0.5 297,598 - +1.5 297,641 - -0.4
Or see this region's nucleotide sequence