Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29180

Experiment: no extra (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no extra (N); with MOPS
6,486,050	-		PFLU_RS31200	0.40	+2.1
6,486,050	-		PFLU_RS31200	0.40	+1.0
6,486,050	-		PFLU_RS31200	0.40	+0.2
6,486,050	-		PFLU_RS31200	0.40	+0.1
6,486,166	+		PFLU_RS31200	0.50	-0.6
6,486,166	+		PFLU_RS31200	0.50	+0.5
6,486,166	+		PFLU_RS31200	0.50	+0.8
6,486,206	-		PFLU_RS31200	0.53	+0.5
6,486,307	+		PFLU_RS31200	0.61	+0.3
6,486,308	-		PFLU_RS31200	0.61	+0.1
6,486,319	+		PFLU_RS31200	0.62	-0.4
6,486,319	+		PFLU_RS31200	0.62	-0.2
6,486,320	-		PFLU_RS31200	0.62	+0.5
6,486,382	+		PFLU_RS31200	0.67	-2.0
6,486,383	-		PFLU_RS31200	0.67	-1.8
6,486,584	-		PFLU_RS31200	0.84	-0.1
6,486,740	+				+2.1
6,486,740	+				+0.2
6,486,740	+				+0.3
6,486,740	+				+0.1
6,486,740	+				+0.3
6,486,741	-				+1.1
6,486,741	-				-1.5
6,486,741	-				+0.7
6,486,755	-				+0.2
6,486,755	-				-1.0
6,486,755	-				+0.3
6,486,757	+				-0.7
6,486,757	+				+1.8
6,486,758	-				-1.9
6,486,758	-				+0.1
6,486,758	-				+0.4
6,486,786	+				+0.3
6,486,786	+				-1.0
6,486,786	+				-2.7
6,486,786	+				-0.3
6,486,786	+				-1.0
6,486,815	+				-0.2
6,486,815	+				-0.0
6,486,815	+				-1.7
6,486,815	+				+1.5
6,486,815	+				-2.1
6,486,815	+				+0.3
6,486,815	+				+0.3
6,486,816	-				-1.0
6,486,816	-				-0.6
6,486,816	-				+0.4
6,486,816	-				+0.3
6,486,816	-				+1.0
6,486,818	+				+1.2
6,486,818	+				+0.8
6,486,818	+				+0.2
6,486,818	+				-0.6
6,486,818	+				+0.8
6,486,818	+				+1.0
6,486,818	+				+1.8
6,486,819	-				-2.3
6,486,819	-				-0.5
6,486,819	-				-0.2
6,486,819	-				+2.3
6,486,819	-				+0.5
6,486,832	+				-0.5
6,486,857	+				-0.8
6,486,858	-				+0.5
6,486,882	-				-0.3
6,486,899	+				+1.0
6,486,899	+				+0.1
6,486,899	+				+0.4
6,486,899	+				-0.4
6,486,899	+				+0.5
6,486,899	+				+0.5
6,486,899	+				-0.3
6,486,900	-				-0.4
6,486,900	-				+0.4
6,486,900	-				-0.7
6,486,900	-				-0.0
6,486,901	+				+0.9
6,486,901	+				-0.2
6,486,902	-				+0.3
6,486,925	-				-0.7
6,486,932	+				+0.7
6,486,932	+				+0.9
6,486,932	+				+0.8
6,486,932	+				+1.1
6,486,932	+				+1.5
6,486,932	+				-0.7
6,486,932	+				-0.7
6,486,932	+				+2.1
6,486,932	+				+0.8
6,486,932	+				+1.4
6,486,932	+				-0.0
6,486,932	+				+0.1
6,486,932	+				+2.1
6,486,932	+				-0.8
6,486,932	+				+0.7
6,486,933	-				-2.3
6,486,933	-				-1.3
6,486,933	-				-0.0
6,486,933	-				+0.8
6,486,933	-				+1.8
6,486,933	-				+1.3
6,486,933	-				+0.8
6,486,942	+				+0.0
6,486,942	+				+1.4
6,486,943	-				-0.4
6,486,943	-				-1.3
6,486,943	-				-0.9
6,487,079	+		PFLU_RS29180	0.15	+0.9
6,487,079	+		PFLU_RS29180	0.15	-1.6
6,487,159	-		PFLU_RS29180	0.27	+0.5
6,487,159	-		PFLU_RS29180	0.27	+0.8
6,487,169	+		PFLU_RS29180	0.29	-0.2
6,487,169	+		PFLU_RS29180	0.29	-1.0
6,487,169	+		PFLU_RS29180	0.29	-1.8
6,487,170	-		PFLU_RS29180	0.29	-0.5
6,487,170	-		PFLU_RS29180	0.29	-1.2
6,487,170	-		PFLU_RS29180	0.29	+0.4
6,487,249	+		PFLU_RS29180	0.41	+0.2
6,487,249	+		PFLU_RS29180	0.41	-0.4
6,487,249	+		PFLU_RS29180	0.41	-0.4
6,487,250	-		PFLU_RS29180	0.41	-1.4
6,487,250	-		PFLU_RS29180	0.41	-0.5
6,487,250	-		PFLU_RS29180	0.41	+0.5
6,487,250	-		PFLU_RS29180	0.41	+0.6
6,487,250	-		PFLU_RS29180	0.41	-2.3
6,487,250	-		PFLU_RS29180	0.41	-1.0
6,487,250	-		PFLU_RS29180	0.41	-2.3
6,487,250	-		PFLU_RS29180	0.41	-0.2
6,487,250	-		PFLU_RS29180	0.41	+2.1
6,487,250	-		PFLU_RS29180	0.41	-0.6
6,487,415	+		PFLU_RS29180	0.65	+0.1
6,487,415	+		PFLU_RS29180	0.65	+0.3
6,487,415	+		PFLU_RS29180	0.65	-0.9
6,487,415	+		PFLU_RS29180	0.65	+0.1
6,487,415	+		PFLU_RS29180	0.65	-1.7
6,487,415	+		PFLU_RS29180	0.65	-0.5
6,487,416	-		PFLU_RS29180	0.65	-0.1
6,487,416	-		PFLU_RS29180	0.65	-0.6
6,487,416	-		PFLU_RS29180	0.65	-0.8
6,487,416	-		PFLU_RS29180	0.65	-0.1
6,487,416	-		PFLU_RS29180	0.65	+0.1
6,487,568	+		PFLU_RS29180	0.88	+0.5
6,487,568	+		PFLU_RS29180	0.88	-0.4
6,487,568	+		PFLU_RS29180	0.88	-0.7
6,487,568	+		PFLU_RS29180	0.88	-0.8
6,487,568	+		PFLU_RS29180	0.88	-1.0
6,487,604	+				+0.7
6,487,604	+				-0.0
6,487,604	+				+1.6
6,487,604	+				+0.6
6,487,604	+				+0.5
6,487,604	+				-0.0
6,487,604	+				+0.7
6,487,604	+				-0.3
6,487,605	-				+0.7
6,487,605	-				+0.1
6,487,605	-				-1.2
6,487,605	-				-1.0
6,487,605	-				+0.7
6,487,605	-				-0.3
6,487,605	-				+0.0
6,487,605	-				+0.6
6,487,605	-				-0.5
6,487,605	-				-1.1
6,487,605	-				+0.4
6,487,605	-				-1.3
6,487,658	-				-0.5
6,487,691	+				+1.9
6,487,691	+				+1.1
6,487,692	-				-1.5
6,487,692	-				-0.3
6,487,692	-				+0.9
6,487,692	-				-0.4
6,487,692	-				-0.6
6,487,692	-				-0.3
6,487,717	+				-0.3
6,487,717	+				+0.1
6,487,717	+				-0.2
6,487,717	+				+0.1
6,487,718	-				-1.3
6,487,718	-				+1.7
6,487,718	-				+2.1
6,487,870	+		PFLU_RS29185	0.36	-0.2
6,487,959	+		PFLU_RS29185	0.55	+0.4
6,487,960	-		PFLU_RS29185	0.55	+2.5
6,487,960	-		PFLU_RS29185	0.55	+0.5
6,487,986	+		PFLU_RS29185	0.61	-0.1
6,487,986	+		PFLU_RS29185	0.61	-2.7
6,487,986	+		PFLU_RS29185	0.61	+0.0
6,487,986	+		PFLU_RS29185	0.61	+0.4
6,487,986	+		PFLU_RS29185	0.61	+0.3
6,487,986	+		PFLU_RS29185	0.61	-0.5
6,487,986	+		PFLU_RS29185	0.61	+1.6
6,487,986	+		PFLU_RS29185	0.61	+0.1
6,487,986	+		PFLU_RS29185	0.61	-1.0
6,487,986	+		PFLU_RS29185	0.61	+0.3
6,487,986	+		PFLU_RS29185	0.61	-1.5
6,487,986	+		PFLU_RS29185	0.61	+0.5
6,487,986	+		PFLU_RS29185	0.61	-0.3
6,487,987	-		PFLU_RS29185	0.61	-0.2
6,487,987	-		PFLU_RS29185	0.61	+0.8
6,487,987	-		PFLU_RS29185	0.61	-0.7
6,487,987	-		PFLU_RS29185	0.61	-0.5
6,487,987	-		PFLU_RS29185	0.61	-0.2
6,487,987	-		PFLU_RS29185	0.61	+0.4
6,487,987	-		PFLU_RS29185	0.61	+2.1
6,487,987	-		PFLU_RS29185	0.61	+1.6
6,487,987	-		PFLU_RS29185	0.61	+1.2
6,487,987	-		PFLU_RS29185	0.61	+0.7
6,487,987	-		PFLU_RS29185	0.61	+0.9
6,487,987	-		PFLU_RS29185	0.61	+1.9
6,487,987	-		PFLU_RS29185	0.61	-0.0
6,487,987	-		PFLU_RS29185	0.61	-1.5
6,487,987	-		PFLU_RS29185	0.61	-0.0
6,487,987	-		PFLU_RS29185	0.61	-2.0
6,487,987	-		PFLU_RS29185	0.61	-0.6
6,487,987	-		PFLU_RS29185	0.61	+0.9
6,488,181	+				-0.3
6,488,181	+				+2.1
6,488,181	+				+0.5
6,488,182	-				-0.6
6,488,182	-				+0.0
6,488,183	+				-0.2
6,488,225	-				-0.3
6,488,225	-				+0.7
6,488,268	+				+0.3
6,488,287	+				+0.5
6,488,288	-				+0.2
6,488,288	-				+0.6
6,488,288	-				+0.9
6,488,301	+				-0.4
6,488,315	-				+0.1
6,488,315	-				+1.1
6,488,315	-				+1.8
6,488,315	-				+1.4
6,488,334	+				-0.7
6,488,334	+				-0.5
6,488,334	+				-0.0
6,488,334	+				+0.0
6,488,334	+				+0.5
6,488,334	+				-1.2
6,488,335	-				-0.5
6,488,335	-				+0.2
6,488,335	-				+0.4
6,488,335	-				+1.9
6,488,335	-				-0.3
6,488,335	-				+0.8
6,488,335	-				-0.5
6,488,344	+				-0.7
6,488,345	-				+1.5
6,488,355	+				-1.2
6,488,356	-				+0.1
6,488,356	-				+0.8
6,488,427	+		PFLU_RS29190	0.10	-1.9
6,488,427	+		PFLU_RS29190	0.10	+0.4
6,488,427	+		PFLU_RS29190	0.10	-0.2
6,488,427	+		PFLU_RS29190	0.10	+1.0
6,488,427	+		PFLU_RS29190	0.10	-2.4
6,488,428	-		PFLU_RS29190	0.10	+0.8
6,488,449	+		PFLU_RS29190	0.14	-0.5
6,488,449	+		PFLU_RS29190	0.14	+0.5
6,488,450	-		PFLU_RS29190	0.15	-1.5
6,488,450	-		PFLU_RS29190	0.15	+0.1
6,488,576	+		PFLU_RS29190	0.39	-0.5
6,488,576	+		PFLU_RS29190	0.39	-0.8
6,488,576	+		PFLU_RS29190	0.39	-1.5
6,488,576	+		PFLU_RS29190	0.39	+1.7
6,488,576	+		PFLU_RS29190	0.39	+0.3
6,488,576	+		PFLU_RS29190	0.39	+0.1
6,488,576	+		PFLU_RS29190	0.39	+1.7
6,488,576	+		PFLU_RS29190	0.39	+0.5
6,488,576	+		PFLU_RS29190	0.39	-0.7
6,488,576	+		PFLU_RS29190	0.39	-0.2
6,488,576	+		PFLU_RS29190	0.39	-0.7
6,488,576	+		PFLU_RS29190	0.39	+1.1
6,488,576	+		PFLU_RS29190	0.39	+1.1
6,488,576	+		PFLU_RS29190	0.39	+0.1
6,488,576	+		PFLU_RS29190	0.39	-1.4
6,488,576	+		PFLU_RS29190	0.39	+0.2
6,488,576	+		PFLU_RS29190	0.39	+1.0
6,488,576	+		PFLU_RS29190	0.39	-1.6
6,488,576	+		PFLU_RS29190	0.39	+0.7
6,488,576	+		PFLU_RS29190	0.39	+0.5
6,488,576	+		PFLU_RS29190	0.39	-0.5
6,488,576	+		PFLU_RS29190	0.39	-1.2
6,488,576	+		PFLU_RS29190	0.39	-1.2
6,488,576	+		PFLU_RS29190	0.39	-0.4
6,488,576	+		PFLU_RS29190	0.39	-0.7
6,488,576	+		PFLU_RS29190	0.39	+1.0
6,488,576	+		PFLU_RS29190	0.39	-2.0
6,488,576	+		PFLU_RS29190	0.39	-0.2
6,488,576	+		PFLU_RS29190	0.39	+0.4
6,488,577	-		PFLU_RS29190	0.39	-1.9
6,488,577	-		PFLU_RS29190	0.39	+0.8
6,488,577	-		PFLU_RS29190	0.39	-0.5
6,488,577	-		PFLU_RS29190	0.39	+2.7
6,488,577	-		PFLU_RS29190	0.39	-0.5
6,488,577	-		PFLU_RS29190	0.39	+2.4
6,488,577	-		PFLU_RS29190	0.39	-2.3
6,488,577	-		PFLU_RS29190	0.39	+2.4
6,488,577	-		PFLU_RS29190	0.39	-1.0
6,488,577	-		PFLU_RS29190	0.39	+0.5
6,488,577	-		PFLU_RS29190	0.39	+0.4
6,488,577	-		PFLU_RS29190	0.39	-0.5
6,488,577	-		PFLU_RS29190	0.39	-2.4
6,488,577	-		PFLU_RS29190	0.39	-1.6
6,488,577	-		PFLU_RS29190	0.39	-0.4
6,488,577	-		PFLU_RS29190	0.39	-0.5
6,488,577	-		PFLU_RS29190	0.39	-1.9
6,488,577	-		PFLU_RS29190	0.39	-1.6
6,488,577	-		PFLU_RS29190	0.39	-0.8
6,488,577	-		PFLU_RS29190	0.39	-0.2
6,488,626	+		PFLU_RS29190	0.48	+0.4
6,488,627	-		PFLU_RS29190	0.48	+2.0
6,488,632	+		PFLU_RS29190	0.49	+0.5
6,488,632	+		PFLU_RS29190	0.49	+0.2
6,488,632	+		PFLU_RS29190	0.49	+0.6
6,488,632	+		PFLU_RS29190	0.49	+1.3
6,488,633	-		PFLU_RS29190	0.50	+3.1
6,488,633	-		PFLU_RS29190	0.50	+0.7
6,488,633	-		PFLU_RS29190	0.50	-0.7
6,488,633	-		PFLU_RS29190	0.50	-0.2
6,488,633	-		PFLU_RS29190	0.50	+3.0
6,488,633	-		PFLU_RS29190	0.50	-0.0
6,488,633	-		PFLU_RS29190	0.50	+0.1
6,488,633	-		PFLU_RS29190	0.50	-1.2