Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21475 and HSERO_RS21480 are separated by 98 nucleotides HSERO_RS21480 and HSERO_RS21485 are separated by 13 nucleotides HSERO_RS21485 and HSERO_RS21490 are separated by 79 nucleotides
HSERO_RS21475: HSERO_RS21475 - recombinase XerC, at 4,916,507 to 4,917,487
_RS21475
HSERO_RS21480: HSERO_RS21480 - transcriptional regulator, at 4,917,586 to 4,918,167
_RS21480
HSERO_RS21485: HSERO_RS21485 - phosphoglycolate phosphatase, at 4,918,181 to 4,918,918
_RS21485
HSERO_RS21490: HSERO_RS21490 - hypothetical protein, at 4,918,998 to 4,919,909
_RS21490
Position (kb) 4917
4918
4919 Strain fitness (log2 ratio) -1
0
1 at 4916.982 kb on + strand, within HSERO_RS21475 at 4917.051 kb on + strand, within HSERO_RS21475 at 4917.162 kb on + strand, within HSERO_RS21475 at 4917.484 kb on + strand at 4917.521 kb on - strand at 4917.528 kb on + strand at 4917.550 kb on + strand at 4917.550 kb on + strand at 4917.558 kb on - strand at 4917.558 kb on - strand at 4917.587 kb on - strand at 4917.793 kb on + strand, within HSERO_RS21480 at 4918.093 kb on + strand, within HSERO_RS21480 at 4918.185 kb on - strand at 4918.230 kb on + strand at 4918.318 kb on + strand, within HSERO_RS21485 at 4918.362 kb on + strand, within HSERO_RS21485 at 4918.510 kb on + strand, within HSERO_RS21485 at 4918.543 kb on + strand, within HSERO_RS21485 at 4918.543 kb on - strand, within HSERO_RS21485 at 4918.671 kb on + strand, within HSERO_RS21485 at 4918.718 kb on - strand, within HSERO_RS21485 at 4918.791 kb on + strand, within HSERO_RS21485 at 4918.818 kb on - strand, within HSERO_RS21485 at 4918.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 4,916,982 + HSERO_RS21475 0.48 -0.3 4,917,051 + HSERO_RS21475 0.55 -1.6 4,917,162 + HSERO_RS21475 0.67 -0.7 4,917,484 + +0.3 4,917,521 - -0.2 4,917,528 + -0.9 4,917,550 + -0.4 4,917,550 + +0.5 4,917,558 - +0.2 4,917,558 - +0.0 4,917,587 - -0.2 4,917,793 + HSERO_RS21480 0.36 +0.0 4,918,093 + HSERO_RS21480 0.87 -1.2 4,918,185 - -0.1 4,918,230 + -0.7 4,918,318 + HSERO_RS21485 0.19 +0.1 4,918,362 + HSERO_RS21485 0.25 -0.3 4,918,510 + HSERO_RS21485 0.45 -0.6 4,918,543 + HSERO_RS21485 0.49 -0.3 4,918,543 - HSERO_RS21485 0.49 -0.3 4,918,671 + HSERO_RS21485 0.66 -0.5 4,918,718 - HSERO_RS21485 0.73 +1.2 4,918,791 + HSERO_RS21485 0.83 +0.1 4,918,818 - HSERO_RS21485 0.86 +0.6 4,918,908 - -0.0
Or see this region's nucleotide sequence