Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18495 and HSERO_RS18500 overlap by 4 nucleotides HSERO_RS18500 and HSERO_RS18505 overlap by 14 nucleotides HSERO_RS18505 and HSERO_RS18510 overlap by 8 nucleotides HSERO_RS18510 and HSERO_RS18515 overlap by 4 nucleotides
HSERO_RS18495: HSERO_RS18495 - glycosyl transferase, at 4,244,635 to 4,245,423
_RS18495
HSERO_RS18500: HSERO_RS18500 - acyltransferase, at 4,245,420 to 4,246,382
_RS18500
HSERO_RS18505: HSERO_RS18505 - histidine ammonia-lyase, at 4,246,369 to 4,247,949
_RS18505
HSERO_RS18510: HSERO_RS18510 - thioesterase, at 4,247,942 to 4,248,406
_RS18510
HSERO_RS18515: HSERO_RS18515 - membrane protein, at 4,248,403 to 4,249,014
_RS18515
Position (kb) 4246
4247
4248 Strain fitness (log2 ratio) -1
0
1 at 4245.463 kb on - strand at 4245.486 kb on + strand at 4245.713 kb on + strand, within HSERO_RS18500 at 4245.736 kb on - strand, within HSERO_RS18500 at 4245.844 kb on - strand, within HSERO_RS18500 at 4246.172 kb on + strand, within HSERO_RS18500 at 4246.198 kb on + strand, within HSERO_RS18500 at 4246.258 kb on - strand, within HSERO_RS18500 at 4246.258 kb on - strand, within HSERO_RS18500 at 4246.409 kb on - strand at 4246.644 kb on + strand, within HSERO_RS18505 at 4246.883 kb on - strand, within HSERO_RS18505 at 4246.887 kb on + strand, within HSERO_RS18505 at 4247.019 kb on + strand, within HSERO_RS18505 at 4247.485 kb on + strand, within HSERO_RS18505 at 4247.560 kb on - strand, within HSERO_RS18505 at 4247.590 kb on + strand, within HSERO_RS18505 at 4247.597 kb on + strand, within HSERO_RS18505 at 4247.663 kb on - strand, within HSERO_RS18505 at 4247.675 kb on + strand, within HSERO_RS18505 at 4247.721 kb on + strand, within HSERO_RS18505 at 4247.756 kb on + strand, within HSERO_RS18505 at 4247.855 kb on - strand at 4247.928 kb on + strand at 4247.983 kb on - strand at 4248.024 kb on - strand, within HSERO_RS18510 at 4248.129 kb on + strand, within HSERO_RS18510 at 4248.165 kb on + strand, within HSERO_RS18510 at 4248.508 kb on + strand, within HSERO_RS18515 at 4248.738 kb on - strand, within HSERO_RS18515
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 4,245,463 - +1.3 4,245,486 + +0.2 4,245,713 + HSERO_RS18500 0.30 +0.4 4,245,736 - HSERO_RS18500 0.33 +0.4 4,245,844 - HSERO_RS18500 0.44 +0.3 4,246,172 + HSERO_RS18500 0.78 +0.4 4,246,198 + HSERO_RS18500 0.81 -0.3 4,246,258 - HSERO_RS18500 0.87 +1.0 4,246,258 - HSERO_RS18500 0.87 -0.2 4,246,409 - -0.2 4,246,644 + HSERO_RS18505 0.17 -0.6 4,246,883 - HSERO_RS18505 0.33 -1.0 4,246,887 + HSERO_RS18505 0.33 +0.7 4,247,019 + HSERO_RS18505 0.41 -0.4 4,247,485 + HSERO_RS18505 0.71 +0.1 4,247,560 - HSERO_RS18505 0.75 -0.2 4,247,590 + HSERO_RS18505 0.77 -0.1 4,247,597 + HSERO_RS18505 0.78 +0.2 4,247,663 - HSERO_RS18505 0.82 +0.8 4,247,675 + HSERO_RS18505 0.83 -1.3 4,247,721 + HSERO_RS18505 0.86 +0.5 4,247,756 + HSERO_RS18505 0.88 -0.7 4,247,855 - +0.5 4,247,928 + +0.4 4,247,983 - -0.4 4,248,024 - HSERO_RS18510 0.18 -0.8 4,248,129 + HSERO_RS18510 0.40 +0.7 4,248,165 + HSERO_RS18510 0.48 -0.1 4,248,508 + HSERO_RS18515 0.17 -1.1 4,248,738 - HSERO_RS18515 0.55 -0.3
Or see this region's nucleotide sequence