Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04145 and HSERO_RS04150 are separated by 643 nucleotides HSERO_RS04150 and HSERO_RS04155 are separated by 124 nucleotides HSERO_RS04155 and HSERO_RS04160 overlap by 4 nucleotides
HSERO_RS04145: HSERO_RS04145 - hisitidine kinase, at 908,298 to 909,017
_RS04145
HSERO_RS04150: HSERO_RS04150 - hypothetical protein, at 909,661 to 910,029
_RS04150
HSERO_RS04155: HSERO_RS04155 - hypothetical protein, at 910,154 to 910,621
_RS04155
HSERO_RS04160: HSERO_RS04160 - hypothetical protein, at 910,618 to 911,763
_RS04160
Position (kb) 909
910
911 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 908.667 kb on - strand, within HSERO_RS04145 at 908.745 kb on - strand, within HSERO_RS04145 at 908.769 kb on + strand, within HSERO_RS04145 at 908.917 kb on - strand, within HSERO_RS04145 at 908.965 kb on + strand at 908.965 kb on + strand at 908.965 kb on + strand at 908.965 kb on + strand at 908.965 kb on + strand at 908.973 kb on - strand at 908.973 kb on - strand at 908.973 kb on - strand at 908.973 kb on - strand at 908.973 kb on - strand at 908.973 kb on - strand at 908.973 kb on - strand at 908.973 kb on - strand at 908.973 kb on - strand at 909.317 kb on + strand at 909.326 kb on - strand at 909.580 kb on + strand at 909.874 kb on + strand, within HSERO_RS04150 at 910.098 kb on - strand at 910.416 kb on - strand, within HSERO_RS04155 at 910.707 kb on - strand at 910.839 kb on + strand at 910.842 kb on - strand, within HSERO_RS04160 at 910.847 kb on - strand, within HSERO_RS04160 at 910.989 kb on - strand, within HSERO_RS04160
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 908,667 - HSERO_RS04145 0.51 +0.0 908,745 - HSERO_RS04145 0.62 +0.0 908,769 + HSERO_RS04145 0.65 +0.3 908,917 - HSERO_RS04145 0.86 -0.1 908,965 + -0.1 908,965 + -0.2 908,965 + -0.2 908,965 + +0.1 908,965 + -0.7 908,973 - +0.3 908,973 - +0.7 908,973 - -0.3 908,973 - +0.1 908,973 - -5.2 908,973 - +0.3 908,973 - -2.3 908,973 - -0.3 908,973 - +0.3 909,317 + -0.4 909,326 - -0.4 909,580 + -0.2 909,874 + HSERO_RS04150 0.58 -0.7 910,098 - -0.7 910,416 - HSERO_RS04155 0.56 +0.4 910,707 - -1.5 910,839 + +1.8 910,842 - HSERO_RS04160 0.20 -0.6 910,847 - HSERO_RS04160 0.20 -0.8 910,989 - HSERO_RS04160 0.32 -0.5
Or see this region's nucleotide sequence