Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01260

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01255 and HSERO_RS01260 are separated by 223 nucleotidesHSERO_RS01260 and HSERO_RS01265 are separated by 49 nucleotides HSERO_RS01255: HSERO_RS01255 - acyl-CoA dehydrogenase, at 261,991 to 263,781 _RS01255 HSERO_RS01260: HSERO_RS01260 - 3-hydroxyacyl-CoA dehydrogenase, at 264,005 to 266,392 _RS01260 HSERO_RS01265: HSERO_RS01265 - acetyl-CoA acetyltransferase, at 266,442 to 267,638 _RS01265 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -2 -1 0 1at 263.053 kb on + strand, within HSERO_RS01255at 263.238 kb on + strand, within HSERO_RS01255at 263.238 kb on + strandat 263.286 kb on - strand, within HSERO_RS01255at 263.575 kb on + strand, within HSERO_RS01255at 263.778 kb on - strandat 263.836 kb on - strandat 263.911 kb on + strandat 264.757 kb on + strand, within HSERO_RS01260at 265.303 kb on + strand, within HSERO_RS01260at 265.951 kb on - strand, within HSERO_RS01260at 266.332 kb on + strandat 266.687 kb on + strand, within HSERO_RS01265at 266.695 kb on - strand, within HSERO_RS01265at 267.151 kb on - strand, within HSERO_RS01265

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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263,053 + HSERO_RS01255 0.59 -0.8
263,238 + HSERO_RS01255 0.70 +0.1
263,238 + -0.3
263,286 - HSERO_RS01255 0.72 -0.4
263,575 + HSERO_RS01255 0.88 +0.5
263,778 - -2.3
263,836 - -0.6
263,911 + -0.7
264,757 + HSERO_RS01260 0.31 -1.9
265,303 + HSERO_RS01260 0.54 -1.4
265,951 - HSERO_RS01260 0.81 -2.0
266,332 + -1.7
266,687 + HSERO_RS01265 0.20 -0.2
266,695 - HSERO_RS01265 0.21 -0.2
267,151 - HSERO_RS01265 0.59 -1.3

Or see this region's nucleotide sequence