Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4681

Experiment: LB, pH5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4680 and Ac3H11_4681 are separated by 385 nucleotidesAc3H11_4681 and Ac3H11_4682 are separated by 63 nucleotides Ac3H11_4680 - probable outer membrane secretion protein - Rhodobacter capsulatus, at 288,825 to 290,780 _4680 Ac3H11_4681 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 291,166 to 291,627 _4681 Ac3H11_4682 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 291,691 to 292,647 _4682 Position (kb) 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 290.185 kb on + strand, within Ac3H11_4680at 290.185 kb on + strand, within Ac3H11_4680at 290.186 kb on - strand, within Ac3H11_4680at 290.186 kb on - strand, within Ac3H11_4680at 290.186 kb on - strand, within Ac3H11_4680at 290.186 kb on - strand, within Ac3H11_4680at 290.186 kb on - strand, within Ac3H11_4680at 290.209 kb on + strand, within Ac3H11_4680at 290.210 kb on - strand, within Ac3H11_4680at 290.210 kb on - strand, within Ac3H11_4680at 290.210 kb on - strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.213 kb on + strand, within Ac3H11_4680at 290.214 kb on - strand, within Ac3H11_4680at 290.214 kb on - strand, within Ac3H11_4680at 290.214 kb on - strand, within Ac3H11_4680at 290.214 kb on - strand, within Ac3H11_4680at 290.214 kb on - strand, within Ac3H11_4680at 290.214 kb on - strand, within Ac3H11_4680at 290.214 kb on - strand, within Ac3H11_4680at 290.233 kb on + strand, within Ac3H11_4680at 290.233 kb on + strand, within Ac3H11_4680at 290.233 kb on + strand, within Ac3H11_4680at 290.233 kb on + strand, within Ac3H11_4680at 290.233 kb on + strand, within Ac3H11_4680at 290.233 kb on + strand, within Ac3H11_4680at 290.234 kb on - strand, within Ac3H11_4680at 290.234 kb on - strand, within Ac3H11_4680at 290.234 kb on - strand, within Ac3H11_4680at 290.234 kb on - strand, within Ac3H11_4680at 290.234 kb on - strand, within Ac3H11_4680at 290.334 kb on + strand, within Ac3H11_4680at 290.334 kb on + strand, within Ac3H11_4680at 290.335 kb on - strand, within Ac3H11_4680at 290.335 kb on - strand, within Ac3H11_4680at 290.407 kb on + strand, within Ac3H11_4680at 290.408 kb on - strand, within Ac3H11_4680at 290.408 kb on - strand, within Ac3H11_4680at 290.424 kb on + strand, within Ac3H11_4680at 290.425 kb on - strand, within Ac3H11_4680at 290.425 kb on - strand, within Ac3H11_4680at 290.425 kb on - strand, within Ac3H11_4680at 290.488 kb on + strand, within Ac3H11_4680at 290.488 kb on + strand, within Ac3H11_4680at 290.488 kb on + strand, within Ac3H11_4680at 290.489 kb on - strand, within Ac3H11_4680at 290.489 kb on - strand, within Ac3H11_4680at 290.526 kb on + strand, within Ac3H11_4680at 290.526 kb on + strand, within Ac3H11_4680at 290.526 kb on + strand, within Ac3H11_4680at 290.526 kb on + strand, within Ac3H11_4680at 290.526 kb on + strand, within Ac3H11_4680at 290.526 kb on + strand, within Ac3H11_4680at 290.527 kb on - strand, within Ac3H11_4680at 290.527 kb on - strand, within Ac3H11_4680at 290.527 kb on - strand, within Ac3H11_4680at 290.527 kb on - strand, within Ac3H11_4680at 290.527 kb on - strand, within Ac3H11_4680at 290.527 kb on - strand, within Ac3H11_4680at 290.547 kb on - strand, within Ac3H11_4680at 290.680 kb on + strandat 290.680 kb on + strandat 290.966 kb on + strandat 290.967 kb on - strandat 290.967 kb on - strandat 290.977 kb on - strandat 290.994 kb on + strandat 291.018 kb on + strandat 291.018 kb on + strandat 291.020 kb on + strandat 291.021 kb on - strandat 291.038 kb on - strandat 291.051 kb on + strandat 291.052 kb on - strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.137 kb on + strandat 291.138 kb on - strandat 291.138 kb on - strandat 291.138 kb on - strandat 291.138 kb on - strandat 291.138 kb on - strandat 291.138 kb on - strandat 291.153 kb on + strandat 291.153 kb on + strandat 291.153 kb on + strandat 291.153 kb on + strandat 291.153 kb on + strandat 291.153 kb on + strandat 291.154 kb on - strandat 291.154 kb on - strandat 291.154 kb on - strandat 291.154 kb on - strandat 291.154 kb on - strandat 291.167 kb on + strandat 291.167 kb on + strandat 291.168 kb on - strandat 291.179 kb on + strandat 291.180 kb on - strandat 291.658 kb on - strandat 291.658 kb on - strandat 291.658 kb on - strandat 291.658 kb on - strandat 291.661 kb on + strandat 291.661 kb on + strandat 291.662 kb on - strandat 291.734 kb on + strandat 291.735 kb on - strandat 292.109 kb on + strand, within Ac3H11_4682at 292.109 kb on + strand, within Ac3H11_4682at 292.110 kb on - strand, within Ac3H11_4682at 292.244 kb on + strand, within Ac3H11_4682at 292.244 kb on + strand, within Ac3H11_4682at 292.244 kb on + strand, within Ac3H11_4682at 292.245 kb on - strand, within Ac3H11_4682at 292.245 kb on - strand, within Ac3H11_4682at 292.245 kb on - strand, within Ac3H11_4682at 292.245 kb on - strand, within Ac3H11_4682at 292.245 kb on - strand, within Ac3H11_4682at 292.310 kb on + strand, within Ac3H11_4682at 292.310 kb on + strand, within Ac3H11_4682at 292.310 kb on + strand, within Ac3H11_4682at 292.310 kb on + strand, within Ac3H11_4682at 292.310 kb on + strand, within Ac3H11_4682at 292.311 kb on - strand, within Ac3H11_4682at 292.311 kb on - strand, within Ac3H11_4682at 292.423 kb on - strand, within Ac3H11_4682at 292.457 kb on + strand, within Ac3H11_4682at 292.458 kb on - strand, within Ac3H11_4682

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH5
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290,185 + Ac3H11_4680 0.70 +0.1
290,185 + Ac3H11_4680 0.70 +0.5
290,186 - Ac3H11_4680 0.70 +0.3
290,186 - Ac3H11_4680 0.70 -0.4
290,186 - Ac3H11_4680 0.70 +0.7
290,186 - Ac3H11_4680 0.70 -0.1
290,186 - Ac3H11_4680 0.70 +0.5
290,209 + Ac3H11_4680 0.71 +0.3
290,210 - Ac3H11_4680 0.71 -0.3
290,210 - Ac3H11_4680 0.71 -0.3
290,210 - Ac3H11_4680 0.71 +0.2
290,213 + Ac3H11_4680 0.71 +1.9
290,213 + Ac3H11_4680 0.71 -0.0
290,213 + Ac3H11_4680 0.71 +1.1
290,213 + Ac3H11_4680 0.71 +1.1
290,213 + Ac3H11_4680 0.71 +1.0
290,213 + Ac3H11_4680 0.71 +1.3
290,213 + Ac3H11_4680 0.71 +0.6
290,213 + Ac3H11_4680 0.71 -0.2
290,213 + Ac3H11_4680 0.71 +0.5
290,213 + Ac3H11_4680 0.71 +0.3
290,214 - Ac3H11_4680 0.71 +1.2
290,214 - Ac3H11_4680 0.71 -0.4
290,214 - Ac3H11_4680 0.71 +0.8
290,214 - Ac3H11_4680 0.71 +0.7
290,214 - Ac3H11_4680 0.71 +0.2
290,214 - Ac3H11_4680 0.71 +1.4
290,214 - Ac3H11_4680 0.71 +0.3
290,233 + Ac3H11_4680 0.72 +0.7
290,233 + Ac3H11_4680 0.72 +0.4
290,233 + Ac3H11_4680 0.72 +0.9
290,233 + Ac3H11_4680 0.72 +0.8
290,233 + Ac3H11_4680 0.72 -1.3
290,233 + Ac3H11_4680 0.72 +0.9
290,234 - Ac3H11_4680 0.72 +0.3
290,234 - Ac3H11_4680 0.72 +0.5
290,234 - Ac3H11_4680 0.72 +1.0
290,234 - Ac3H11_4680 0.72 +0.6
290,234 - Ac3H11_4680 0.72 +0.6
290,334 + Ac3H11_4680 0.77 +0.7
290,334 + Ac3H11_4680 0.77 +0.5
290,335 - Ac3H11_4680 0.77 +1.1
290,335 - Ac3H11_4680 0.77 +0.3
290,407 + Ac3H11_4680 0.81 +0.5
290,408 - Ac3H11_4680 0.81 +0.3
290,408 - Ac3H11_4680 0.81 -0.1
290,424 + Ac3H11_4680 0.82 +0.2
290,425 - Ac3H11_4680 0.82 +0.4
290,425 - Ac3H11_4680 0.82 +1.1
290,425 - Ac3H11_4680 0.82 +0.7
290,488 + Ac3H11_4680 0.85 +0.5
290,488 + Ac3H11_4680 0.85 +0.2
290,488 + Ac3H11_4680 0.85 +0.5
290,489 - Ac3H11_4680 0.85 +0.5
290,489 - Ac3H11_4680 0.85 +0.5
290,526 + Ac3H11_4680 0.87 +0.3
290,526 + Ac3H11_4680 0.87 +0.3
290,526 + Ac3H11_4680 0.87 +0.1
290,526 + Ac3H11_4680 0.87 +1.2
290,526 + Ac3H11_4680 0.87 +1.7
290,526 + Ac3H11_4680 0.87 -0.0
290,527 - Ac3H11_4680 0.87 +0.2
290,527 - Ac3H11_4680 0.87 +0.5
290,527 - Ac3H11_4680 0.87 +0.9
290,527 - Ac3H11_4680 0.87 +0.2
290,527 - Ac3H11_4680 0.87 +0.3
290,527 - Ac3H11_4680 0.87 +0.1
290,547 - Ac3H11_4680 0.88 -0.3
290,680 + -0.2
290,680 + +1.0
290,966 + +0.7
290,967 - +0.1
290,967 - -1.3
290,977 - -0.3
290,994 + +0.6
291,018 + +0.6
291,018 + +0.5
291,020 + -0.1
291,021 - +0.1
291,038 - -0.1
291,051 + -1.2
291,052 - -0.9
291,137 + -0.5
291,137 + +0.3
291,137 + +0.0
291,137 + +0.1
291,137 + -0.6
291,137 + -0.8
291,137 + -0.3
291,137 + +0.5
291,137 + -0.2
291,137 + -0.1
291,137 + -0.0
291,138 - -1.0
291,138 - -0.7
291,138 - -1.1
291,138 - -0.8
291,138 - -0.6
291,138 - -0.5
291,153 + -0.5
291,153 + -0.2
291,153 + +0.4
291,153 + +0.3
291,153 + +0.5
291,153 + +0.8
291,154 - -0.2
291,154 - +0.4
291,154 - -0.0
291,154 - -0.8
291,154 - +0.2
291,167 + +0.7
291,167 + +0.3
291,168 - -0.7
291,179 + -0.6
291,180 - +0.2
291,658 - -0.2
291,658 - +0.9
291,658 - +0.1
291,658 - -0.2
291,661 + -2.0
291,661 + -1.5
291,662 - +0.2
291,734 + +0.4
291,735 - -0.4
292,109 + Ac3H11_4682 0.44 -0.6
292,109 + Ac3H11_4682 0.44 -0.6
292,110 - Ac3H11_4682 0.44 -0.3
292,244 + Ac3H11_4682 0.58 -0.6
292,244 + Ac3H11_4682 0.58 -3.5
292,244 + Ac3H11_4682 0.58 +0.1
292,245 - Ac3H11_4682 0.58 -0.5
292,245 - Ac3H11_4682 0.58 +0.1
292,245 - Ac3H11_4682 0.58 -0.3
292,245 - Ac3H11_4682 0.58 -1.3
292,245 - Ac3H11_4682 0.58 +0.3
292,310 + Ac3H11_4682 0.65 -0.8
292,310 + Ac3H11_4682 0.65 -1.4
292,310 + Ac3H11_4682 0.65 -0.8
292,310 + Ac3H11_4682 0.65 -0.4
292,310 + Ac3H11_4682 0.65 -0.4
292,311 - Ac3H11_4682 0.65 -0.2
292,311 - Ac3H11_4682 0.65 -0.2
292,423 - Ac3H11_4682 0.76 +0.6
292,457 + Ac3H11_4682 0.80 +0.7
292,458 - Ac3H11_4682 0.80 -0.3

Or see this region's nucleotide sequence