Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2483

Experiment: LB, pH5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2980 and Ac3H11_2482 are separated by 25 nucleotidesAc3H11_2482 and Ac3H11_2483 overlap by 1 nucleotidesAc3H11_2483 and Ac3H11_2484 overlap by 1 nucleotidesAc3H11_2484 and Ac3H11_2485 are separated by 44 nucleotides Ac3H11_2980 - tRNA-Lys-TTT, at 749,285 to 749,357 _2980 Ac3H11_2482 - Probable HesA/MoeB/ThiF family protein, at 749,383 to 750,231 _2482 Ac3H11_2483 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 750,231 to 751,022 _2483 Ac3H11_2484 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 751,022 to 751,564 _2484 Ac3H11_2485 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 751,609 to 752,928 _2485 Position (kb) 750 751 752Strain fitness (log2 ratio) -2 -1 0 1at 749.273 kb on + strandat 749.274 kb on - strandat 749.274 kb on - strandat 749.274 kb on - strandat 749.277 kb on + strandat 749.278 kb on - strandat 749.410 kb on - strandat 749.410 kb on - strandat 749.434 kb on - strandat 749.513 kb on + strand, within Ac3H11_2482at 749.513 kb on + strand, within Ac3H11_2482at 749.513 kb on + strand, within Ac3H11_2482at 749.514 kb on - strand, within Ac3H11_2482at 749.687 kb on + strand, within Ac3H11_2482at 749.687 kb on + strand, within Ac3H11_2482at 749.687 kb on + strand, within Ac3H11_2482at 749.687 kb on + strand, within Ac3H11_2482at 749.687 kb on + strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.688 kb on - strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.692 kb on + strand, within Ac3H11_2482at 749.693 kb on - strand, within Ac3H11_2482at 749.693 kb on - strand, within Ac3H11_2482at 749.693 kb on - strand, within Ac3H11_2482at 749.693 kb on - strand, within Ac3H11_2482at 749.693 kb on - strand, within Ac3H11_2482at 749.693 kb on - strand, within Ac3H11_2482at 749.920 kb on - strand, within Ac3H11_2482at 749.920 kb on - strand, within Ac3H11_2482at 749.922 kb on + strand, within Ac3H11_2482at 749.922 kb on + strand, within Ac3H11_2482at 749.922 kb on + strand, within Ac3H11_2482at 749.922 kb on + strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.923 kb on - strand, within Ac3H11_2482at 749.960 kb on + strand, within Ac3H11_2482at 749.961 kb on + strand, within Ac3H11_2482at 749.961 kb on + strand, within Ac3H11_2482at 749.961 kb on + strand, within Ac3H11_2482at 749.961 kb on + strand, within Ac3H11_2482at 749.961 kb on + strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.962 kb on - strand, within Ac3H11_2482at 749.991 kb on + strand, within Ac3H11_2482at 749.991 kb on + strand, within Ac3H11_2482at 749.992 kb on - strand, within Ac3H11_2482at 749.992 kb on - strand, within Ac3H11_2482at 750.140 kb on + strand, within Ac3H11_2482at 750.140 kb on + strand, within Ac3H11_2482at 750.140 kb on + strand, within Ac3H11_2482at 750.140 kb on + strand, within Ac3H11_2482at 750.141 kb on - strand, within Ac3H11_2482at 750.232 kb on + strandat 750.232 kb on + strandat 750.233 kb on - strandat 750.233 kb on - strandat 750.233 kb on - strandat 750.233 kb on - strandat 750.233 kb on - strandat 750.233 kb on - strandat 750.423 kb on - strand, within Ac3H11_2483at 750.439 kb on + strand, within Ac3H11_2483at 750.439 kb on + strand, within Ac3H11_2483at 750.440 kb on - strand, within Ac3H11_2483at 750.440 kb on - strand, within Ac3H11_2483at 750.440 kb on - strand, within Ac3H11_2483at 751.029 kb on + strandat 751.029 kb on + strandat 751.030 kb on - strandat 751.030 kb on - strandat 751.589 kb on - strandat 751.589 kb on - strandat 751.589 kb on - strandat 751.605 kb on - strandat 751.605 kb on - strandat 751.605 kb on - strandat 751.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH5
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749,273 + -0.5
749,274 - +0.1
749,274 - -0.3
749,274 - -0.1
749,277 + +0.8
749,278 - +1.1
749,410 - -0.7
749,410 - +0.1
749,434 - +0.3
749,513 + Ac3H11_2482 0.15 -0.1
749,513 + Ac3H11_2482 0.15 -1.3
749,513 + Ac3H11_2482 0.15 +0.4
749,514 - Ac3H11_2482 0.15 -0.4
749,687 + Ac3H11_2482 0.36 +0.1
749,687 + Ac3H11_2482 0.36 -0.1
749,687 + Ac3H11_2482 0.36 +0.8
749,687 + Ac3H11_2482 0.36 +0.1
749,687 + Ac3H11_2482 0.36 +0.5
749,688 - Ac3H11_2482 0.36 -0.1
749,688 - Ac3H11_2482 0.36 -0.5
749,688 - Ac3H11_2482 0.36 +0.7
749,688 - Ac3H11_2482 0.36 -0.4
749,688 - Ac3H11_2482 0.36 -0.5
749,688 - Ac3H11_2482 0.36 -0.2
749,688 - Ac3H11_2482 0.36 -0.1
749,688 - Ac3H11_2482 0.36 +0.1
749,688 - Ac3H11_2482 0.36 +0.6
749,692 + Ac3H11_2482 0.36 +0.2
749,692 + Ac3H11_2482 0.36 +0.7
749,692 + Ac3H11_2482 0.36 +0.4
749,692 + Ac3H11_2482 0.36 +0.6
749,692 + Ac3H11_2482 0.36 +0.2
749,692 + Ac3H11_2482 0.36 +0.3
749,692 + Ac3H11_2482 0.36 -0.3
749,692 + Ac3H11_2482 0.36 +0.9
749,692 + Ac3H11_2482 0.36 +0.1
749,693 - Ac3H11_2482 0.37 +0.1
749,693 - Ac3H11_2482 0.37 +0.3
749,693 - Ac3H11_2482 0.37 -0.5
749,693 - Ac3H11_2482 0.37 +0.3
749,693 - Ac3H11_2482 0.37 +1.0
749,693 - Ac3H11_2482 0.37 -0.6
749,920 - Ac3H11_2482 0.63 -0.5
749,920 - Ac3H11_2482 0.63 -0.1
749,922 + Ac3H11_2482 0.63 -0.5
749,922 + Ac3H11_2482 0.63 +0.1
749,922 + Ac3H11_2482 0.63 +0.9
749,922 + Ac3H11_2482 0.63 +0.8
749,923 - Ac3H11_2482 0.64 -0.4
749,923 - Ac3H11_2482 0.64 +0.3
749,923 - Ac3H11_2482 0.64 +0.2
749,923 - Ac3H11_2482 0.64 +1.1
749,923 - Ac3H11_2482 0.64 +0.6
749,923 - Ac3H11_2482 0.64 +0.2
749,923 - Ac3H11_2482 0.64 +0.8
749,923 - Ac3H11_2482 0.64 +0.1
749,923 - Ac3H11_2482 0.64 +0.6
749,960 + Ac3H11_2482 0.68 +0.2
749,961 + Ac3H11_2482 0.68 +0.3
749,961 + Ac3H11_2482 0.68 +1.5
749,961 + Ac3H11_2482 0.68 +0.7
749,961 + Ac3H11_2482 0.68 +0.4
749,961 + Ac3H11_2482 0.68 +0.5
749,962 - Ac3H11_2482 0.68 +0.1
749,962 - Ac3H11_2482 0.68 -0.9
749,962 - Ac3H11_2482 0.68 -0.6
749,962 - Ac3H11_2482 0.68 +0.6
749,962 - Ac3H11_2482 0.68 +0.3
749,962 - Ac3H11_2482 0.68 +0.2
749,962 - Ac3H11_2482 0.68 +0.0
749,962 - Ac3H11_2482 0.68 -0.3
749,962 - Ac3H11_2482 0.68 +0.7
749,962 - Ac3H11_2482 0.68 +1.3
749,962 - Ac3H11_2482 0.68 +0.8
749,962 - Ac3H11_2482 0.68 +0.5
749,962 - Ac3H11_2482 0.68 +0.1
749,991 + Ac3H11_2482 0.72 +0.3
749,991 + Ac3H11_2482 0.72 +0.3
749,992 - Ac3H11_2482 0.72 +0.6
749,992 - Ac3H11_2482 0.72 +0.7
750,140 + Ac3H11_2482 0.89 +0.2
750,140 + Ac3H11_2482 0.89 +0.0
750,140 + Ac3H11_2482 0.89 +0.2
750,140 + Ac3H11_2482 0.89 +0.8
750,141 - Ac3H11_2482 0.89 +0.9
750,232 + -0.3
750,232 + +1.1
750,233 - -0.1
750,233 - +0.2
750,233 - +0.3
750,233 - +0.7
750,233 - -0.1
750,233 - -1.2
750,423 - Ac3H11_2483 0.24 -0.9
750,439 + Ac3H11_2483 0.26 -2.2
750,439 + Ac3H11_2483 0.26 -0.6
750,440 - Ac3H11_2483 0.26 -1.6
750,440 - Ac3H11_2483 0.26 -0.2
750,440 - Ac3H11_2483 0.26 -2.7
751,029 + -0.9
751,029 + -2.4
751,030 - +1.1
751,030 - -1.1
751,589 - -0.1
751,589 - -0.4
751,589 - +0.1
751,605 - +0.4
751,605 - -0.4
751,605 - -0.1
751,605 - -0.1

Or see this region's nucleotide sequence