Experiment: LB, pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2370 and Ac3H11_2371 are separated by 20 nucleotides Ac3H11_2371 and Ac3H11_2372 overlap by 4 nucleotides Ac3H11_2372 and Ac3H11_2373 are separated by 205 nucleotides Ac3H11_2373 and Ac3H11_2374 overlap by 4 nucleotides Ac3H11_2374 and Ac3H11_2375 are separated by 11 nucleotides
Ac3H11_2370 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 630,199 to 633,867
_2370
Ac3H11_2371 - CheY-like response regulator domain, at 633,888 to 634,286
_2371
Ac3H11_2372 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 634,283 to 636,163
_2372
Ac3H11_2373 - hypothetical protein, at 636,369 to 636,752
_2373
Ac3H11_2374 - 4-oxalocrotonate tautomerase (EC 5.3.2.-), at 636,749 to 636,967
_2374
Ac3H11_2375 - Glutathione S-transferase (EC 2.5.1.18), at 636,979 to 637,596
_2375
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -2
-1
0
1 at 633.626 kb on + strand at 633.626 kb on + strand at 633.626 kb on + strand at 633.627 kb on - strand at 633.627 kb on - strand at 633.627 kb on - strand at 633.627 kb on - strand at 633.627 kb on - strand at 633.686 kb on + strand at 634.099 kb on + strand, within Ac3H11_2371 at 634.099 kb on + strand, within Ac3H11_2371 at 634.100 kb on - strand, within Ac3H11_2371 at 634.100 kb on - strand, within Ac3H11_2371 at 634.225 kb on + strand, within Ac3H11_2371 at 634.225 kb on + strand, within Ac3H11_2371 at 634.225 kb on + strand, within Ac3H11_2371 at 634.225 kb on + strand, within Ac3H11_2371 at 634.225 kb on + strand, within Ac3H11_2371 at 634.226 kb on - strand, within Ac3H11_2371 at 634.260 kb on + strand at 634.260 kb on + strand at 634.260 kb on + strand at 634.260 kb on + strand at 634.261 kb on - strand at 634.261 kb on - strand at 634.261 kb on - strand at 634.261 kb on - strand at 634.261 kb on - strand at 634.261 kb on - strand at 634.261 kb on - strand at 634.261 kb on - strand at 634.897 kb on + strand, within Ac3H11_2372 at 634.897 kb on + strand, within Ac3H11_2372 at 634.897 kb on + strand, within Ac3H11_2372 at 634.897 kb on + strand, within Ac3H11_2372 at 634.897 kb on + strand, within Ac3H11_2372 at 634.898 kb on - strand, within Ac3H11_2372 at 634.898 kb on - strand, within Ac3H11_2372 at 634.898 kb on - strand, within Ac3H11_2372 at 634.898 kb on - strand, within Ac3H11_2372 at 634.898 kb on - strand, within Ac3H11_2372 at 634.898 kb on - strand, within Ac3H11_2372 at 634.898 kb on - strand, within Ac3H11_2372 at 635.069 kb on + strand, within Ac3H11_2372 at 635.069 kb on + strand, within Ac3H11_2372 at 635.070 kb on - strand, within Ac3H11_2372 at 635.070 kb on - strand, within Ac3H11_2372 at 635.070 kb on - strand, within Ac3H11_2372 at 635.148 kb on + strand, within Ac3H11_2372 at 635.148 kb on + strand, within Ac3H11_2372 at 635.148 kb on + strand, within Ac3H11_2372 at 635.148 kb on + strand, within Ac3H11_2372 at 635.148 kb on + strand, within Ac3H11_2372 at 635.149 kb on - strand, within Ac3H11_2372 at 635.149 kb on - strand, within Ac3H11_2372 at 635.149 kb on - strand, within Ac3H11_2372 at 635.817 kb on + strand, within Ac3H11_2372 at 635.817 kb on + strand, within Ac3H11_2372 at 635.817 kb on + strand, within Ac3H11_2372 at 635.818 kb on - strand, within Ac3H11_2372 at 635.818 kb on - strand, within Ac3H11_2372 at 635.818 kb on - strand, within Ac3H11_2372 at 635.924 kb on - strand, within Ac3H11_2372 at 635.924 kb on - strand, within Ac3H11_2372 at 636.022 kb on - strand at 636.022 kb on - strand at 636.111 kb on + strand at 636.112 kb on - strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.207 kb on + strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.208 kb on - strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.210 kb on + strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.211 kb on - strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.385 kb on + strand at 636.386 kb on - strand at 636.386 kb on - strand at 636.386 kb on - strand at 636.386 kb on - strand at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.587 kb on - strand, within Ac3H11_2373 at 636.589 kb on - strand, within Ac3H11_2373 at 636.634 kb on + strand, within Ac3H11_2373 at 636.634 kb on + strand, within Ac3H11_2373 at 636.634 kb on + strand, within Ac3H11_2373 at 636.635 kb on - strand, within Ac3H11_2373 at 636.635 kb on - strand, within Ac3H11_2373 at 636.635 kb on - strand, within Ac3H11_2373 at 636.635 kb on - strand, within Ac3H11_2373 at 636.685 kb on + strand, within Ac3H11_2373 at 636.685 kb on + strand, within Ac3H11_2373 at 636.685 kb on + strand, within Ac3H11_2373 at 636.685 kb on + strand, within Ac3H11_2373 at 636.686 kb on - strand, within Ac3H11_2373 at 636.700 kb on + strand, within Ac3H11_2373 at 636.701 kb on - strand, within Ac3H11_2373 at 636.960 kb on + strand at 636.960 kb on + strand at 636.960 kb on + strand at 636.960 kb on + strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 636.961 kb on - strand at 637.085 kb on - strand, within Ac3H11_2375 at 637.118 kb on + strand, within Ac3H11_2375 at 637.118 kb on + strand, within Ac3H11_2375 at 637.118 kb on + strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.119 kb on - strand, within Ac3H11_2375 at 637.154 kb on + strand, within Ac3H11_2375 at 637.155 kb on - strand, within Ac3H11_2375 at 637.155 kb on - strand, within Ac3H11_2375
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH5 remove 633,626 + +1.4 633,626 + -1.2 633,626 + -0.9 633,627 - -0.4 633,627 - +0.2 633,627 - +0.1 633,627 - -0.0 633,627 - +0.7 633,686 + -0.2 634,099 + Ac3H11_2371 0.53 -1.6 634,099 + Ac3H11_2371 0.53 -0.8 634,100 - Ac3H11_2371 0.53 -0.6 634,100 - Ac3H11_2371 0.53 -1.1 634,225 + Ac3H11_2371 0.84 -1.6 634,225 + Ac3H11_2371 0.84 -0.5 634,225 + Ac3H11_2371 0.84 -1.7 634,225 + Ac3H11_2371 0.84 -0.1 634,225 + Ac3H11_2371 0.84 +0.3 634,226 - Ac3H11_2371 0.85 +0.4 634,260 + +1.0 634,260 + +0.4 634,260 + +0.4 634,260 + -0.8 634,261 - -0.5 634,261 - +0.8 634,261 - +0.2 634,261 - -0.8 634,261 - +0.1 634,261 - +0.5 634,261 - -1.0 634,261 - -0.2 634,897 + Ac3H11_2372 0.33 -0.6 634,897 + Ac3H11_2372 0.33 -0.7 634,897 + Ac3H11_2372 0.33 -0.4 634,897 + Ac3H11_2372 0.33 +0.3 634,897 + Ac3H11_2372 0.33 -0.4 634,898 - Ac3H11_2372 0.33 +0.3 634,898 - Ac3H11_2372 0.33 -1.3 634,898 - Ac3H11_2372 0.33 -0.2 634,898 - Ac3H11_2372 0.33 -0.5 634,898 - Ac3H11_2372 0.33 -1.6 634,898 - Ac3H11_2372 0.33 -0.6 634,898 - Ac3H11_2372 0.33 +0.1 635,069 + Ac3H11_2372 0.42 +0.5 635,069 + Ac3H11_2372 0.42 -1.9 635,070 - Ac3H11_2372 0.42 +0.0 635,070 - Ac3H11_2372 0.42 +0.1 635,070 - Ac3H11_2372 0.42 -0.9 635,148 + Ac3H11_2372 0.46 +0.8 635,148 + Ac3H11_2372 0.46 -0.3 635,148 + Ac3H11_2372 0.46 +1.1 635,148 + Ac3H11_2372 0.46 -0.1 635,148 + Ac3H11_2372 0.46 +0.6 635,149 - Ac3H11_2372 0.46 +0.1 635,149 - Ac3H11_2372 0.46 +1.0 635,149 - Ac3H11_2372 0.46 +0.0 635,817 + Ac3H11_2372 0.82 -0.2 635,817 + Ac3H11_2372 0.82 +0.1 635,817 + Ac3H11_2372 0.82 -0.9 635,818 - Ac3H11_2372 0.82 -0.3 635,818 - Ac3H11_2372 0.82 +0.7 635,818 - Ac3H11_2372 0.82 -0.2 635,924 - Ac3H11_2372 0.87 -0.3 635,924 - Ac3H11_2372 0.87 -0.2 636,022 - -0.1 636,022 - -0.3 636,111 + +0.4 636,112 - -0.7 636,207 + -0.2 636,207 + -0.0 636,207 + +0.0 636,207 + -0.5 636,207 + -0.1 636,207 + -0.5 636,208 - -0.4 636,208 - -1.0 636,208 - +0.3 636,208 - +0.4 636,208 - +0.5 636,208 - -1.0 636,210 + +0.6 636,210 + +0.6 636,210 + -0.2 636,210 + +1.6 636,210 + -0.6 636,210 + +0.5 636,210 + -0.4 636,210 + +0.9 636,211 - -0.2 636,211 - -0.4 636,211 - +0.4 636,211 - +1.1 636,211 - -0.2 636,211 - -0.3 636,211 - +0.8 636,211 - +0.1 636,211 - -0.9 636,211 - +0.6 636,211 - +0.2 636,211 - -0.2 636,211 - -0.4 636,211 - +0.1 636,211 - +0.2 636,211 - -0.2 636,211 - +0.1 636,211 - -0.2 636,385 + +0.4 636,385 + +1.1 636,385 + -1.1 636,385 + -0.7 636,385 + -0.2 636,385 + +0.4 636,386 - -0.1 636,386 - +0.1 636,386 - +0.5 636,386 - -0.3 636,587 - Ac3H11_2373 0.57 +1.1 636,587 - Ac3H11_2373 0.57 -0.0 636,587 - Ac3H11_2373 0.57 +1.3 636,587 - Ac3H11_2373 0.57 +0.5 636,587 - Ac3H11_2373 0.57 +0.9 636,587 - Ac3H11_2373 0.57 +1.6 636,587 - Ac3H11_2373 0.57 +0.4 636,587 - Ac3H11_2373 0.57 -0.7 636,589 - Ac3H11_2373 0.57 +0.2 636,634 + Ac3H11_2373 0.69 -0.3 636,634 + Ac3H11_2373 0.69 +0.4 636,634 + Ac3H11_2373 0.69 -0.1 636,635 - Ac3H11_2373 0.69 +0.2 636,635 - Ac3H11_2373 0.69 -1.0 636,635 - Ac3H11_2373 0.69 +0.9 636,635 - Ac3H11_2373 0.69 +0.5 636,685 + Ac3H11_2373 0.82 +0.0 636,685 + Ac3H11_2373 0.82 +0.3 636,685 + Ac3H11_2373 0.82 +0.6 636,685 + Ac3H11_2373 0.82 +0.1 636,686 - Ac3H11_2373 0.83 +0.2 636,700 + Ac3H11_2373 0.86 -1.3 636,701 - Ac3H11_2373 0.86 +0.2 636,960 + -0.3 636,960 + -1.0 636,960 + +0.4 636,960 + -0.9 636,961 - -1.2 636,961 - +0.9 636,961 - -1.7 636,961 - +0.5 636,961 - -0.2 636,961 - +0.4 636,961 - +0.2 636,961 - +0.4 636,961 - +0.5 637,085 - Ac3H11_2375 0.17 -1.2 637,118 + Ac3H11_2375 0.22 -1.7 637,118 + Ac3H11_2375 0.22 -0.3 637,118 + Ac3H11_2375 0.22 -0.3 637,119 - Ac3H11_2375 0.23 -1.4 637,119 - Ac3H11_2375 0.23 +0.2 637,119 - Ac3H11_2375 0.23 +0.7 637,119 - Ac3H11_2375 0.23 +0.7 637,119 - Ac3H11_2375 0.23 +0.5 637,154 + Ac3H11_2375 0.28 +0.2 637,155 - Ac3H11_2375 0.28 -0.1 637,155 - Ac3H11_2375 0.28 -1.3
Or see this region's nucleotide sequence