Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26210

Experiment: syringaldehyde 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26200 and AO353_26205 are separated by 102 nucleotidesAO353_26205 and AO353_26210 are separated by 81 nucleotidesAO353_26210 and AO353_26215 overlap by 4 nucleotidesAO353_26215 and AO353_26220 overlap by 4 nucleotides AO353_26200: AO353_26200 - phage tail protein, at 5,764,117 to 5,764,770 _26200 AO353_26205: AO353_26205 - hypothetical protein, at 5,764,873 to 5,765,535 _26205 AO353_26210: AO353_26210 - hypothetical protein, at 5,765,617 to 5,766,036 _26210 AO353_26215: AO353_26215 - hypothetical protein, at 5,766,033 to 5,766,686 _26215 AO353_26220: AO353_26220 - hypothetical protein, at 5,766,683 to 5,767,054 _26220 Position (kb) 5765 5766 5767Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5764.698 kb on + strand, within AO353_26200at 5764.698 kb on + strand, within AO353_26200at 5764.698 kb on + strand, within AO353_26200at 5764.699 kb on - strand, within AO353_26200at 5764.699 kb on - strand, within AO353_26200at 5764.699 kb on - strand, within AO353_26200at 5764.699 kb on - strand, within AO353_26200at 5764.699 kb on - strand, within AO353_26200at 5764.719 kb on - strandat 5764.850 kb on - strandat 5765.046 kb on + strand, within AO353_26205at 5765.046 kb on + strand, within AO353_26205at 5765.046 kb on + strand, within AO353_26205at 5765.047 kb on - strand, within AO353_26205at 5765.169 kb on - strand, within AO353_26205at 5765.169 kb on - strand, within AO353_26205at 5765.169 kb on - strand, within AO353_26205at 5765.171 kb on + strand, within AO353_26205at 5765.171 kb on + strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.172 kb on - strand, within AO353_26205at 5765.182 kb on + strand, within AO353_26205at 5765.182 kb on + strand, within AO353_26205at 5765.182 kb on + strand, within AO353_26205at 5765.182 kb on + strand, within AO353_26205at 5765.182 kb on + strand, within AO353_26205at 5765.182 kb on + strand, within AO353_26205at 5765.182 kb on + strand, within AO353_26205at 5765.183 kb on - strand, within AO353_26205at 5765.183 kb on - strand, within AO353_26205at 5765.183 kb on - strand, within AO353_26205at 5765.183 kb on - strand, within AO353_26205at 5765.252 kb on + strand, within AO353_26205at 5765.252 kb on + strand, within AO353_26205at 5765.252 kb on + strand, within AO353_26205at 5765.252 kb on + strand, within AO353_26205at 5765.252 kb on + strand, within AO353_26205at 5765.252 kb on + strand, within AO353_26205at 5765.252 kb on + strand, within AO353_26205at 5765.252 kb on + strand, within AO353_26205at 5765.253 kb on - strand, within AO353_26205at 5765.253 kb on - strand, within AO353_26205at 5765.443 kb on + strand, within AO353_26205at 5765.443 kb on + strand, within AO353_26205at 5765.443 kb on + strand, within AO353_26205at 5765.443 kb on + strand, within AO353_26205at 5765.443 kb on + strand, within AO353_26205at 5765.443 kb on + strand, within AO353_26205at 5765.443 kb on + strand, within AO353_26205at 5765.444 kb on - strand, within AO353_26205at 5765.444 kb on - strand, within AO353_26205at 5765.444 kb on - strand, within AO353_26205at 5765.444 kb on - strand, within AO353_26205at 5765.450 kb on + strand, within AO353_26205at 5765.451 kb on - strand, within AO353_26205at 5765.455 kb on + strand, within AO353_26205at 5765.467 kb on + strand, within AO353_26205at 5765.467 kb on + strand, within AO353_26205at 5765.467 kb on + strand, within AO353_26205at 5765.468 kb on - strand, within AO353_26205at 5765.512 kb on + strandat 5765.513 kb on - strandat 5765.513 kb on - strandat 5765.513 kb on - strandat 5765.513 kb on - strandat 5765.513 kb on - strandat 5765.537 kb on + strandat 5765.564 kb on + strandat 5765.564 kb on + strandat 5765.618 kb on + strandat 5765.618 kb on + strandat 5765.619 kb on - strandat 5765.619 kb on - strandat 5765.619 kb on - strandat 5765.619 kb on - strandat 5765.620 kb on + strandat 5765.620 kb on + strandat 5765.620 kb on + strandat 5765.620 kb on + strandat 5765.620 kb on + strandat 5765.620 kb on + strandat 5765.639 kb on + strandat 5765.640 kb on - strandat 5765.640 kb on - strandat 5765.640 kb on - strandat 5765.661 kb on + strand, within AO353_26210at 5765.847 kb on - strand, within AO353_26210at 5765.847 kb on - strand, within AO353_26210at 5765.847 kb on - strand, within AO353_26210at 5765.912 kb on + strand, within AO353_26210at 5765.912 kb on + strand, within AO353_26210at 5765.912 kb on + strand, within AO353_26210at 5765.912 kb on + strand, within AO353_26210at 5765.912 kb on + strand, within AO353_26210at 5765.913 kb on - strand, within AO353_26210at 5765.913 kb on - strand, within AO353_26210at 5765.913 kb on - strand, within AO353_26210at 5765.913 kb on - strand, within AO353_26210at 5765.935 kb on - strand, within AO353_26210at 5765.935 kb on - strand, within AO353_26210at 5765.935 kb on - strand, within AO353_26210at 5765.951 kb on + strand, within AO353_26210at 5765.951 kb on + strand, within AO353_26210at 5766.010 kb on + strandat 5766.010 kb on + strandat 5766.010 kb on + strandat 5766.010 kb on + strandat 5766.010 kb on + strandat 5766.010 kb on + strandat 5766.010 kb on + strandat 5766.010 kb on + strandat 5766.011 kb on - strandat 5766.011 kb on - strandat 5766.011 kb on - strandat 5766.036 kb on + strandat 5766.036 kb on + strandat 5766.036 kb on + strandat 5766.036 kb on + strandat 5766.036 kb on + strandat 5766.037 kb on - strandat 5766.037 kb on - strandat 5766.037 kb on - strandat 5766.130 kb on + strand, within AO353_26215at 5766.169 kb on + strand, within AO353_26215at 5766.169 kb on + strand, within AO353_26215at 5766.170 kb on - strand, within AO353_26215at 5766.170 kb on - strand, within AO353_26215at 5766.272 kb on + strand, within AO353_26215at 5766.316 kb on + strand, within AO353_26215at 5766.388 kb on + strand, within AO353_26215at 5766.388 kb on + strand, within AO353_26215at 5766.389 kb on - strand, within AO353_26215at 5766.389 kb on - strand, within AO353_26215at 5766.389 kb on - strand, within AO353_26215at 5766.452 kb on + strand, within AO353_26215at 5766.453 kb on - strand, within AO353_26215at 5766.478 kb on + strand, within AO353_26215at 5766.478 kb on + strand, within AO353_26215at 5766.479 kb on - strand, within AO353_26215at 5766.563 kb on + strand, within AO353_26215at 5766.564 kb on - strand, within AO353_26215at 5766.676 kb on + strandat 5766.677 kb on - strandat 5766.698 kb on + strandat 5766.698 kb on + strandat 5766.698 kb on + strandat 5766.698 kb on + strandat 5766.698 kb on + strandat 5766.699 kb on - strandat 5766.740 kb on + strandat 5766.740 kb on + strand, within AO353_26220at 5766.740 kb on + strand, within AO353_26220at 5766.741 kb on - strand, within AO353_26220at 5766.946 kb on + strand, within AO353_26220at 5766.946 kb on + strand, within AO353_26220at 5766.957 kb on + strand, within AO353_26220at 5766.958 kb on - strand, within AO353_26220at 5766.958 kb on - strand, within AO353_26220

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
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5,764,698 + AO353_26200 0.89 -0.8
5,764,698 + AO353_26200 0.89 +0.4
5,764,698 + AO353_26200 0.89 +0.8
5,764,699 - AO353_26200 0.89 +1.1
5,764,699 - AO353_26200 0.89 -0.0
5,764,699 - AO353_26200 0.89 -1.2
5,764,699 - AO353_26200 0.89 -0.4
5,764,699 - AO353_26200 0.89 -1.2
5,764,719 - +0.1
5,764,850 - -2.0
5,765,046 + AO353_26205 0.26 +0.2
5,765,046 + AO353_26205 0.26 +1.2
5,765,046 + AO353_26205 0.26 +0.6
5,765,047 - AO353_26205 0.26 +0.6
5,765,169 - AO353_26205 0.45 +0.1
5,765,169 - AO353_26205 0.45 -0.4
5,765,169 - AO353_26205 0.45 +0.9
5,765,171 + AO353_26205 0.45 -1.1
5,765,171 + AO353_26205 0.45 +0.2
5,765,172 - AO353_26205 0.45 -0.3
5,765,172 - AO353_26205 0.45 +0.7
5,765,172 - AO353_26205 0.45 +0.6
5,765,172 - AO353_26205 0.45 +1.6
5,765,172 - AO353_26205 0.45 -0.1
5,765,172 - AO353_26205 0.45 -0.8
5,765,172 - AO353_26205 0.45 -0.1
5,765,172 - AO353_26205 0.45 -0.4
5,765,172 - AO353_26205 0.45 +0.3
5,765,182 + AO353_26205 0.47 +0.6
5,765,182 + AO353_26205 0.47 +0.5
5,765,182 + AO353_26205 0.47 -1.2
5,765,182 + AO353_26205 0.47 +1.6
5,765,182 + AO353_26205 0.47 -0.0
5,765,182 + AO353_26205 0.47 +0.1
5,765,182 + AO353_26205 0.47 -1.0
5,765,183 - AO353_26205 0.47 -2.9
5,765,183 - AO353_26205 0.47 -0.0
5,765,183 - AO353_26205 0.47 +0.3
5,765,183 - AO353_26205 0.47 -0.4
5,765,252 + AO353_26205 0.57 -0.0
5,765,252 + AO353_26205 0.57 -0.5
5,765,252 + AO353_26205 0.57 -0.0
5,765,252 + AO353_26205 0.57 +0.2
5,765,252 + AO353_26205 0.57 -1.7
5,765,252 + AO353_26205 0.57 -0.4
5,765,252 + AO353_26205 0.57 -0.9
5,765,252 + AO353_26205 0.57 -2.2
5,765,253 - AO353_26205 0.57 -0.4
5,765,253 - AO353_26205 0.57 +0.6
5,765,443 + AO353_26205 0.86 -0.2
5,765,443 + AO353_26205 0.86 +0.2
5,765,443 + AO353_26205 0.86 -0.4
5,765,443 + AO353_26205 0.86 +0.1
5,765,443 + AO353_26205 0.86 +1.6
5,765,443 + AO353_26205 0.86 +0.4
5,765,443 + AO353_26205 0.86 -0.1
5,765,444 - AO353_26205 0.86 -0.3
5,765,444 - AO353_26205 0.86 +1.3
5,765,444 - AO353_26205 0.86 +1.2
5,765,444 - AO353_26205 0.86 -0.4
5,765,450 + AO353_26205 0.87 -2.0
5,765,451 - AO353_26205 0.87 -1.5
5,765,455 + AO353_26205 0.88 +0.9
5,765,467 + AO353_26205 0.90 -0.4
5,765,467 + AO353_26205 0.90 -0.8
5,765,467 + AO353_26205 0.90 +0.3
5,765,468 - AO353_26205 0.90 +0.3
5,765,512 + +0.6
5,765,513 - -0.6
5,765,513 - +0.1
5,765,513 - +0.5
5,765,513 - +1.8
5,765,513 - -0.1
5,765,537 + -0.6
5,765,564 + -0.6
5,765,564 + +0.3
5,765,618 + -1.4
5,765,618 + -0.2
5,765,619 - -0.7
5,765,619 - -0.4
5,765,619 - -1.3
5,765,619 - -0.2
5,765,620 + +0.6
5,765,620 + +1.1
5,765,620 + +1.6
5,765,620 + -2.0
5,765,620 + -0.7
5,765,620 + +0.8
5,765,639 + +0.3
5,765,640 - +0.6
5,765,640 - -0.7
5,765,640 - -1.1
5,765,661 + AO353_26210 0.10 -0.4
5,765,847 - AO353_26210 0.55 -0.5
5,765,847 - AO353_26210 0.55 +2.0
5,765,847 - AO353_26210 0.55 -0.3
5,765,912 + AO353_26210 0.70 +0.6
5,765,912 + AO353_26210 0.70 +0.2
5,765,912 + AO353_26210 0.70 +0.6
5,765,912 + AO353_26210 0.70 -1.6
5,765,912 + AO353_26210 0.70 -1.7
5,765,913 - AO353_26210 0.70 -1.0
5,765,913 - AO353_26210 0.70 +1.2
5,765,913 - AO353_26210 0.70 -1.0
5,765,913 - AO353_26210 0.70 -1.4
5,765,935 - AO353_26210 0.76 -1.7
5,765,935 - AO353_26210 0.76 -1.4
5,765,935 - AO353_26210 0.76 -2.2
5,765,951 + AO353_26210 0.80 -0.0
5,765,951 + AO353_26210 0.80 +1.8
5,766,010 + -0.2
5,766,010 + -0.9
5,766,010 + -1.4
5,766,010 + -0.2
5,766,010 + -1.7
5,766,010 + -0.2
5,766,010 + +0.6
5,766,010 + +1.9
5,766,011 - -2.0
5,766,011 - +0.6
5,766,011 - -0.3
5,766,036 + +2.7
5,766,036 + -0.0
5,766,036 + +1.2
5,766,036 + -0.0
5,766,036 + -0.0
5,766,037 - -0.3
5,766,037 - -0.7
5,766,037 - +0.6
5,766,130 + AO353_26215 0.15 -0.8
5,766,169 + AO353_26215 0.21 +0.8
5,766,169 + AO353_26215 0.21 -1.6
5,766,170 - AO353_26215 0.21 -0.4
5,766,170 - AO353_26215 0.21 -1.3
5,766,272 + AO353_26215 0.37 +0.7
5,766,316 + AO353_26215 0.43 +1.2
5,766,388 + AO353_26215 0.54 -0.7
5,766,388 + AO353_26215 0.54 +0.6
5,766,389 - AO353_26215 0.54 -1.0
5,766,389 - AO353_26215 0.54 +0.3
5,766,389 - AO353_26215 0.54 -1.2
5,766,452 + AO353_26215 0.64 +1.3
5,766,453 - AO353_26215 0.64 -0.2
5,766,478 + AO353_26215 0.68 -0.3
5,766,478 + AO353_26215 0.68 +0.6
5,766,479 - AO353_26215 0.68 -0.4
5,766,563 + AO353_26215 0.81 +0.4
5,766,564 - AO353_26215 0.81 +1.6
5,766,676 + +0.6
5,766,677 - +0.8
5,766,698 + +0.6
5,766,698 + -0.1
5,766,698 + -0.6
5,766,698 + -0.4
5,766,698 + +0.4
5,766,699 - +0.9
5,766,740 + -1.0
5,766,740 + AO353_26220 0.15 -0.5
5,766,740 + AO353_26220 0.15 -0.8
5,766,741 - AO353_26220 0.16 -0.7
5,766,946 + AO353_26220 0.71 -0.8
5,766,946 + AO353_26220 0.71 +0.6
5,766,957 + AO353_26220 0.74 -0.2
5,766,958 - AO353_26220 0.74 -0.4
5,766,958 - AO353_26220 0.74 -1.4

Or see this region's nucleotide sequence