Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25275 and AO353_25280 are separated by 69 nucleotides AO353_25280 and AO353_25285 are separated by 151 nucleotides AO353_25285 and AO353_25290 overlap by 4 nucleotides
AO353_25275: AO353_25275 - hypothetical protein, at 5,575,767 to 5,576,426
_25275
AO353_25280: AO353_25280 - gamma-glutamyltransferase, at 5,576,496 to 5,578,106
_25280
AO353_25285: AO353_25285 - transglutaminase, at 5,578,258 to 5,579,055
_25285
AO353_25290: AO353_25290 - hypothetical protein, at 5,579,052 to 5,580,002
_25290
Position (kb) 5576
5577
5578
5579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5575.609 kb on + strand at 5575.610 kb on - strand at 5575.611 kb on + strand at 5575.611 kb on + strand at 5575.611 kb on + strand at 5575.612 kb on - strand at 5575.676 kb on + strand at 5575.676 kb on + strand at 5575.676 kb on + strand at 5575.677 kb on - strand at 5575.677 kb on - strand at 5575.677 kb on - strand at 5575.677 kb on - strand at 5575.687 kb on - strand at 5575.696 kb on - strand at 5575.696 kb on - strand at 5576.098 kb on - strand, within AO353_25275 at 5576.098 kb on - strand, within AO353_25275 at 5576.098 kb on - strand, within AO353_25275 at 5576.201 kb on + strand, within AO353_25275 at 5576.202 kb on - strand, within AO353_25275 at 5576.251 kb on - strand, within AO353_25275 at 5576.267 kb on + strand, within AO353_25275 at 5576.268 kb on - strand, within AO353_25275 at 5576.268 kb on - strand, within AO353_25275 at 5576.268 kb on - strand, within AO353_25275 at 5576.268 kb on - strand, within AO353_25275 at 5576.268 kb on - strand, within AO353_25275 at 5576.313 kb on + strand, within AO353_25275 at 5576.314 kb on - strand, within AO353_25275 at 5576.314 kb on - strand, within AO353_25275 at 5576.340 kb on + strand, within AO353_25275 at 5576.341 kb on - strand, within AO353_25275 at 5576.406 kb on - strand at 5576.544 kb on + strand at 5576.544 kb on + strand at 5576.544 kb on + strand at 5576.544 kb on + strand at 5576.544 kb on + strand at 5576.544 kb on + strand at 5576.544 kb on + strand at 5576.545 kb on - strand at 5576.545 kb on - strand at 5576.545 kb on - strand at 5576.545 kb on - strand at 5576.792 kb on - strand, within AO353_25280 at 5576.792 kb on - strand, within AO353_25280 at 5576.983 kb on + strand, within AO353_25280 at 5576.984 kb on - strand, within AO353_25280 at 5577.037 kb on + strand, within AO353_25280 at 5577.038 kb on - strand, within AO353_25280 at 5577.038 kb on - strand, within AO353_25280 at 5577.038 kb on - strand, within AO353_25280 at 5577.118 kb on + strand, within AO353_25280 at 5577.118 kb on + strand, within AO353_25280 at 5577.118 kb on + strand, within AO353_25280 at 5577.118 kb on + strand, within AO353_25280 at 5577.119 kb on - strand, within AO353_25280 at 5577.119 kb on - strand, within AO353_25280 at 5577.119 kb on - strand, within AO353_25280 at 5577.119 kb on - strand, within AO353_25280 at 5577.132 kb on + strand, within AO353_25280 at 5577.175 kb on + strand, within AO353_25280 at 5577.175 kb on + strand, within AO353_25280 at 5577.175 kb on + strand, within AO353_25280 at 5577.175 kb on + strand, within AO353_25280 at 5577.176 kb on - strand, within AO353_25280 at 5577.176 kb on - strand, within AO353_25280 at 5577.176 kb on - strand, within AO353_25280 at 5577.193 kb on + strand, within AO353_25280 at 5577.331 kb on + strand, within AO353_25280 at 5577.331 kb on + strand, within AO353_25280 at 5577.384 kb on + strand, within AO353_25280 at 5577.385 kb on - strand, within AO353_25280 at 5577.385 kb on - strand, within AO353_25280 at 5577.517 kb on + strand, within AO353_25280 at 5577.518 kb on - strand, within AO353_25280 at 5577.518 kb on - strand, within AO353_25280 at 5577.518 kb on - strand, within AO353_25280 at 5577.576 kb on - strand, within AO353_25280 at 5578.076 kb on - strand at 5578.081 kb on + strand at 5578.082 kb on - strand at 5578.123 kb on + strand at 5578.228 kb on - strand at 5578.228 kb on - strand at 5578.259 kb on + strand at 5578.260 kb on - strand at 5578.260 kb on - strand at 5578.362 kb on - strand, within AO353_25285 at 5578.430 kb on + strand, within AO353_25285 at 5578.514 kb on + strand, within AO353_25285 at 5578.514 kb on + strand, within AO353_25285 at 5578.564 kb on - strand, within AO353_25285 at 5578.564 kb on - strand, within AO353_25285 at 5578.626 kb on + strand, within AO353_25285 at 5578.641 kb on - strand, within AO353_25285 at 5578.641 kb on - strand, within AO353_25285 at 5578.832 kb on + strand, within AO353_25285 at 5578.832 kb on + strand, within AO353_25285 at 5578.833 kb on - strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.876 kb on + strand, within AO353_25285 at 5578.877 kb on - strand, within AO353_25285 at 5578.916 kb on - strand, within AO353_25285 at 5578.916 kb on - strand, within AO353_25285 at 5579.019 kb on - strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.025 kb on - strand at 5579.025 kb on - strand at 5579.056 kb on - strand at 5579.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 5,575,609 + -0.8 5,575,610 - +0.0 5,575,611 + +0.7 5,575,611 + -0.0 5,575,611 + +0.1 5,575,612 - -0.8 5,575,676 + +1.6 5,575,676 + -1.0 5,575,676 + -0.4 5,575,677 - -0.2 5,575,677 - +0.2 5,575,677 - +1.0 5,575,677 - +0.3 5,575,687 - -2.4 5,575,696 - +0.4 5,575,696 - +0.2 5,576,098 - AO353_25275 0.50 +0.3 5,576,098 - AO353_25275 0.50 -1.0 5,576,098 - AO353_25275 0.50 -0.8 5,576,201 + AO353_25275 0.66 +0.6 5,576,202 - AO353_25275 0.66 +1.3 5,576,251 - AO353_25275 0.73 +0.3 5,576,267 + AO353_25275 0.76 -0.6 5,576,268 - AO353_25275 0.76 +0.5 5,576,268 - AO353_25275 0.76 -0.1 5,576,268 - AO353_25275 0.76 +0.2 5,576,268 - AO353_25275 0.76 +0.8 5,576,268 - AO353_25275 0.76 -1.4 5,576,313 + AO353_25275 0.83 -0.4 5,576,314 - AO353_25275 0.83 +1.0 5,576,314 - AO353_25275 0.83 -0.4 5,576,340 + AO353_25275 0.87 +0.0 5,576,341 - AO353_25275 0.87 +0.6 5,576,406 - +1.0 5,576,544 + +0.2 5,576,544 + +0.6 5,576,544 + +0.0 5,576,544 + +0.4 5,576,544 + -0.2 5,576,544 + -0.8 5,576,544 + -0.4 5,576,545 - -0.4 5,576,545 - +1.6 5,576,545 - +0.0 5,576,545 - -0.8 5,576,792 - AO353_25280 0.18 +0.1 5,576,792 - AO353_25280 0.18 -0.4 5,576,983 + AO353_25280 0.30 +0.6 5,576,984 - AO353_25280 0.30 +0.3 5,577,037 + AO353_25280 0.34 +0.6 5,577,038 - AO353_25280 0.34 +0.1 5,577,038 - AO353_25280 0.34 +0.6 5,577,038 - AO353_25280 0.34 -2.0 5,577,118 + AO353_25280 0.39 +0.8 5,577,118 + AO353_25280 0.39 -0.0 5,577,118 + AO353_25280 0.39 +1.6 5,577,118 + AO353_25280 0.39 +1.1 5,577,119 - AO353_25280 0.39 +1.1 5,577,119 - AO353_25280 0.39 +1.6 5,577,119 - AO353_25280 0.39 +2.0 5,577,119 - AO353_25280 0.39 +1.3 5,577,132 + AO353_25280 0.39 +0.3 5,577,175 + AO353_25280 0.42 -0.2 5,577,175 + AO353_25280 0.42 +0.1 5,577,175 + AO353_25280 0.42 -0.6 5,577,175 + AO353_25280 0.42 +1.6 5,577,176 - AO353_25280 0.42 +1.6 5,577,176 - AO353_25280 0.42 +1.0 5,577,176 - AO353_25280 0.42 +0.6 5,577,193 + AO353_25280 0.43 +1.1 5,577,331 + AO353_25280 0.52 -0.5 5,577,331 + AO353_25280 0.52 +0.9 5,577,384 + AO353_25280 0.55 -0.0 5,577,385 - AO353_25280 0.55 +0.6 5,577,385 - AO353_25280 0.55 +1.0 5,577,517 + AO353_25280 0.63 +0.2 5,577,518 - AO353_25280 0.63 +1.8 5,577,518 - AO353_25280 0.63 +0.3 5,577,518 - AO353_25280 0.63 +0.1 5,577,576 - AO353_25280 0.67 +0.1 5,578,076 - +0.9 5,578,081 + -0.0 5,578,082 - +0.1 5,578,123 + +0.6 5,578,228 - +0.5 5,578,228 - +0.1 5,578,259 + -0.3 5,578,260 - +0.6 5,578,260 - -0.0 5,578,362 - AO353_25285 0.13 -1.0 5,578,430 + AO353_25285 0.22 +1.2 5,578,514 + AO353_25285 0.32 -0.9 5,578,514 + AO353_25285 0.32 -0.0 5,578,564 - AO353_25285 0.38 -0.9 5,578,564 - AO353_25285 0.38 -0.8 5,578,626 + AO353_25285 0.46 -1.8 5,578,641 - AO353_25285 0.48 +0.6 5,578,641 - AO353_25285 0.48 -0.7 5,578,832 + AO353_25285 0.72 +1.1 5,578,832 + AO353_25285 0.72 -0.4 5,578,833 - AO353_25285 0.72 -2.0 5,578,876 + AO353_25285 0.77 +0.1 5,578,876 + AO353_25285 0.77 -1.2 5,578,876 + AO353_25285 0.77 -1.6 5,578,876 + AO353_25285 0.77 -0.0 5,578,876 + AO353_25285 0.77 -0.3 5,578,876 + AO353_25285 0.77 +1.4 5,578,876 + AO353_25285 0.77 +0.2 5,578,876 + AO353_25285 0.77 -0.2 5,578,877 - AO353_25285 0.78 -1.0 5,578,916 - AO353_25285 0.82 -0.3 5,578,916 - AO353_25285 0.82 -0.4 5,579,019 - +0.8 5,579,024 + -0.6 5,579,024 + +0.6 5,579,024 + -0.8 5,579,024 + +1.6 5,579,025 - +0.1 5,579,025 - -1.0 5,579,056 - -2.8 5,579,068 + -1.1
Or see this region's nucleotide sequence