Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24970

Experiment: syringaldehyde 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_24965 and AO353_24970 overlap by 1 nucleotidesAO353_24970 and AO353_24975 overlap by 4 nucleotidesAO353_24975 and AO353_24980 are separated by 4 nucleotides AO353_24965: AO353_24965 - formate dehydrogenase, at 5,505,543 to 5,507,969 _24965 AO353_24970: AO353_24970 - formate dehydrogenase, at 5,507,969 to 5,508,919 _24970 AO353_24975: AO353_24975 - formate dehydrogenase, at 5,508,916 to 5,509,569 _24975 AO353_24980: AO353_24980 - formate dehydrogenase accessory protein FdhE, at 5,509,574 to 5,510,500 _24980 Position (kb) 5507 5508 5509Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5507.244 kb on + strand, within AO353_24965at 5507.346 kb on + strand, within AO353_24965at 5507.346 kb on + strand, within AO353_24965at 5507.346 kb on + strand, within AO353_24965at 5507.346 kb on + strand, within AO353_24965at 5507.347 kb on - strand, within AO353_24965at 5507.347 kb on - strand, within AO353_24965at 5507.347 kb on - strand, within AO353_24965at 5507.460 kb on + strand, within AO353_24965at 5507.460 kb on + strand, within AO353_24965at 5507.461 kb on - strand, within AO353_24965at 5507.461 kb on - strand, within AO353_24965at 5507.589 kb on + strand, within AO353_24965at 5507.589 kb on + strand, within AO353_24965at 5507.590 kb on - strand, within AO353_24965at 5507.918 kb on + strandat 5507.918 kb on + strandat 5507.919 kb on - strandat 5508.149 kb on + strand, within AO353_24970at 5508.149 kb on + strand, within AO353_24970at 5508.428 kb on + strand, within AO353_24970at 5508.428 kb on + strand, within AO353_24970at 5508.428 kb on + strand, within AO353_24970at 5508.429 kb on - strand, within AO353_24970at 5508.429 kb on - strand, within AO353_24970at 5508.429 kb on - strand, within AO353_24970at 5508.597 kb on - strand, within AO353_24970at 5508.633 kb on - strand, within AO353_24970at 5508.633 kb on - strand, within AO353_24970at 5508.633 kb on - strand, within AO353_24970at 5508.666 kb on - strand, within AO353_24970at 5508.782 kb on + strand, within AO353_24970at 5508.782 kb on + strand, within AO353_24970at 5508.782 kb on + strand, within AO353_24970at 5508.875 kb on + strandat 5508.875 kb on + strandat 5508.875 kb on + strandat 5508.876 kb on - strandat 5508.876 kb on - strandat 5508.876 kb on - strandat 5508.940 kb on + strandat 5508.940 kb on + strandat 5508.941 kb on - strandat 5508.941 kb on - strandat 5508.941 kb on - strandat 5509.155 kb on + strand, within AO353_24975at 5509.155 kb on + strand, within AO353_24975at 5509.237 kb on + strand, within AO353_24975at 5509.237 kb on + strand, within AO353_24975at 5509.238 kb on - strand, within AO353_24975at 5509.238 kb on - strandat 5509.238 kb on - strand, within AO353_24975at 5509.289 kb on + strand, within AO353_24975at 5509.324 kb on + strand, within AO353_24975at 5509.325 kb on - strand, within AO353_24975at 5509.337 kb on - strand, within AO353_24975at 5509.337 kb on - strand, within AO353_24975at 5509.407 kb on + strand, within AO353_24975at 5509.407 kb on + strand, within AO353_24975at 5509.407 kb on + strand, within AO353_24975at 5509.408 kb on - strand, within AO353_24975at 5509.408 kb on - strand, within AO353_24975at 5509.408 kb on - strand, within AO353_24975at 5509.410 kb on + strand, within AO353_24975at 5509.423 kb on + strand, within AO353_24975at 5509.423 kb on + strand, within AO353_24975at 5509.423 kb on + strand, within AO353_24975at 5509.553 kb on + strandat 5509.553 kb on + strandat 5509.554 kb on - strandat 5509.554 kb on - strandat 5509.656 kb on - strandat 5509.739 kb on + strand, within AO353_24980at 5509.740 kb on - strand, within AO353_24980at 5509.740 kb on - strand, within AO353_24980at 5509.806 kb on + strand, within AO353_24980at 5509.807 kb on - strand, within AO353_24980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
remove
5,507,244 + AO353_24965 0.70 +0.9
5,507,346 + AO353_24965 0.74 +0.1
5,507,346 + AO353_24965 0.74 -0.2
5,507,346 + AO353_24965 0.74 -0.7
5,507,346 + AO353_24965 0.74 -0.4
5,507,347 - AO353_24965 0.74 -0.3
5,507,347 - AO353_24965 0.74 +1.4
5,507,347 - AO353_24965 0.74 -0.1
5,507,460 + AO353_24965 0.79 -0.4
5,507,460 + AO353_24965 0.79 -1.0
5,507,461 - AO353_24965 0.79 -0.8
5,507,461 - AO353_24965 0.79 -0.9
5,507,589 + AO353_24965 0.84 -0.6
5,507,589 + AO353_24965 0.84 -1.4
5,507,590 - AO353_24965 0.84 -0.9
5,507,918 + +0.8
5,507,918 + -1.1
5,507,919 - +0.7
5,508,149 + AO353_24970 0.19 -1.3
5,508,149 + AO353_24970 0.19 -1.2
5,508,428 + AO353_24970 0.48 -1.7
5,508,428 + AO353_24970 0.48 -0.4
5,508,428 + AO353_24970 0.48 -0.7
5,508,429 - AO353_24970 0.48 +0.6
5,508,429 - AO353_24970 0.48 +1.0
5,508,429 - AO353_24970 0.48 -2.4
5,508,597 - AO353_24970 0.66 -1.6
5,508,633 - AO353_24970 0.70 -2.0
5,508,633 - AO353_24970 0.70 -0.0
5,508,633 - AO353_24970 0.70 +1.7
5,508,666 - AO353_24970 0.73 -1.0
5,508,782 + AO353_24970 0.85 -0.7
5,508,782 + AO353_24970 0.85 -0.2
5,508,782 + AO353_24970 0.85 -1.8
5,508,875 + -0.0
5,508,875 + -1.3
5,508,875 + -1.0
5,508,876 - +1.8
5,508,876 - -1.0
5,508,876 - -1.2
5,508,940 + +1.6
5,508,940 + +0.9
5,508,941 - +0.1
5,508,941 - +0.6
5,508,941 - -1.7
5,509,155 + AO353_24975 0.37 +0.8
5,509,155 + AO353_24975 0.37 +0.2
5,509,237 + AO353_24975 0.49 +0.8
5,509,237 + AO353_24975 0.49 -1.2
5,509,238 - AO353_24975 0.49 -2.8
5,509,238 - +0.6
5,509,238 - AO353_24975 0.49 -0.8
5,509,289 + AO353_24975 0.57 -0.0
5,509,324 + AO353_24975 0.62 -0.2
5,509,325 - AO353_24975 0.63 -0.7
5,509,337 - AO353_24975 0.64 +0.7
5,509,337 - AO353_24975 0.64 +1.4
5,509,407 + AO353_24975 0.75 +0.6
5,509,407 + AO353_24975 0.75 +0.0
5,509,407 + AO353_24975 0.75 -0.4
5,509,408 - AO353_24975 0.75 -0.4
5,509,408 - AO353_24975 0.75 -1.0
5,509,408 - AO353_24975 0.75 +1.1
5,509,410 + AO353_24975 0.76 +1.3
5,509,423 + AO353_24975 0.78 +0.9
5,509,423 + AO353_24975 0.78 +0.6
5,509,423 + AO353_24975 0.78 +2.0
5,509,553 + +1.6
5,509,553 + +0.7
5,509,554 - +0.2
5,509,554 - -0.1
5,509,656 - -2.4
5,509,739 + AO353_24980 0.18 +0.6
5,509,740 - AO353_24980 0.18 -0.3
5,509,740 - AO353_24980 0.18 +0.3
5,509,806 + AO353_24980 0.25 +0.6
5,509,807 - AO353_24980 0.25 -0.7

Or see this region's nucleotide sequence