Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19610

Experiment: syringaldehyde 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_19600 and AO353_19605 are separated by 11 nucleotidesAO353_19605 and AO353_19610 are separated by 533 nucleotides AO353_19600: AO353_19600 - NAD-dependent DNA ligase, at 4,295,350 to 4,295,982 _19600 AO353_19605: AO353_19605 - hypothetical protein, at 4,295,994 to 4,296,383 _19605 AO353_19610: AO353_19610 - hypothetical protein, at 4,296,917 to 4,297,288 _19610 Position (kb) 4296 4297 4298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4295.971 kb on + strandat 4295.971 kb on + strandat 4295.971 kb on + strandat 4295.971 kb on + strandat 4295.971 kb on + strandat 4295.971 kb on + strandat 4295.972 kb on - strandat 4295.972 kb on - strandat 4295.972 kb on - strandat 4295.972 kb on - strandat 4295.995 kb on + strandat 4295.995 kb on + strandat 4295.995 kb on + strandat 4295.995 kb on + strandat 4295.996 kb on - strandat 4295.996 kb on - strandat 4295.996 kb on - strandat 4296.025 kb on + strandat 4296.026 kb on - strandat 4296.026 kb on - strandat 4296.026 kb on - strandat 4296.145 kb on + strand, within AO353_19605at 4296.145 kb on + strand, within AO353_19605at 4296.146 kb on - strand, within AO353_19605at 4296.146 kb on - strand, within AO353_19605at 4296.447 kb on + strandat 4296.447 kb on + strandat 4296.447 kb on + strandat 4296.448 kb on - strandat 4296.448 kb on - strandat 4296.448 kb on - strandat 4296.448 kb on - strandat 4296.448 kb on - strandat 4296.458 kb on + strandat 4296.478 kb on - strandat 4296.506 kb on + strandat 4296.515 kb on + strandat 4296.516 kb on - strandat 4296.528 kb on + strandat 4296.528 kb on + strandat 4296.538 kb on + strandat 4296.539 kb on - strandat 4296.556 kb on + strandat 4296.556 kb on + strandat 4296.649 kb on - strandat 4296.649 kb on - strandat 4296.665 kb on + strandat 4296.665 kb on + strandat 4296.665 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.741 kb on + strandat 4296.742 kb on - strandat 4296.742 kb on - strandat 4296.742 kb on - strandat 4296.742 kb on - strandat 4296.742 kb on - strandat 4296.742 kb on - strandat 4296.776 kb on - strandat 4296.912 kb on + strandat 4297.019 kb on + strand, within AO353_19610at 4297.019 kb on + strand, within AO353_19610at 4297.019 kb on + strand, within AO353_19610at 4297.020 kb on - strand, within AO353_19610at 4297.020 kb on - strand, within AO353_19610at 4297.026 kb on + strand, within AO353_19610at 4297.026 kb on + strand, within AO353_19610at 4297.026 kb on + strand, within AO353_19610at 4297.027 kb on - strand, within AO353_19610at 4297.452 kb on + strandat 4297.453 kb on - strandat 4297.453 kb on - strandat 4297.482 kb on + strandat 4297.482 kb on + strandat 4297.483 kb on - strandat 4297.495 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
remove
4,295,971 + -1.3
4,295,971 + +1.4
4,295,971 + +0.7
4,295,971 + -2.5
4,295,971 + -0.3
4,295,971 + +1.5
4,295,972 - +0.2
4,295,972 - +0.5
4,295,972 - +1.7
4,295,972 - -0.9
4,295,995 + +1.4
4,295,995 + -0.3
4,295,995 + +1.9
4,295,995 + +0.4
4,295,996 - -0.6
4,295,996 - -1.3
4,295,996 - -1.3
4,296,025 + +1.3
4,296,026 - +0.8
4,296,026 - +1.0
4,296,026 - -0.3
4,296,145 + AO353_19605 0.39 -1.4
4,296,145 + AO353_19605 0.39 +0.1
4,296,146 - AO353_19605 0.39 +0.2
4,296,146 - AO353_19605 0.39 -0.3
4,296,447 + +0.7
4,296,447 + -1.4
4,296,447 + -0.6
4,296,448 - -0.9
4,296,448 - +1.2
4,296,448 - +1.0
4,296,448 - +0.7
4,296,448 - +0.1
4,296,458 + +0.7
4,296,478 - +0.3
4,296,506 + -0.6
4,296,515 + -1.1
4,296,516 - +0.0
4,296,528 + +1.7
4,296,528 + -0.6
4,296,538 + -1.3
4,296,539 - +0.3
4,296,556 + +1.0
4,296,556 + +1.7
4,296,649 - +0.5
4,296,649 - +1.0
4,296,665 + +1.0
4,296,665 + -0.3
4,296,665 + -0.1
4,296,741 + -1.5
4,296,741 + +0.7
4,296,741 + -0.9
4,296,741 + -0.8
4,296,741 + +0.0
4,296,741 + -0.8
4,296,741 + -1.8
4,296,741 + -0.1
4,296,741 + +0.3
4,296,741 + +0.4
4,296,741 + +1.2
4,296,741 + -0.7
4,296,741 + -2.8
4,296,741 + -1.1
4,296,741 + -1.8
4,296,741 + -1.9
4,296,741 + +0.1
4,296,741 + +1.7
4,296,741 + +0.0
4,296,742 - -1.6
4,296,742 - -0.7
4,296,742 - -0.9
4,296,742 - -1.4
4,296,742 - -0.7
4,296,742 - -0.6
4,296,776 - +0.1
4,296,912 + -0.9
4,297,019 + AO353_19610 0.27 +0.3
4,297,019 + AO353_19610 0.27 +0.5
4,297,019 + AO353_19610 0.27 -2.6
4,297,020 - AO353_19610 0.28 -0.9
4,297,020 - AO353_19610 0.28 -0.7
4,297,026 + AO353_19610 0.29 -0.0
4,297,026 + AO353_19610 0.29 -1.4
4,297,026 + AO353_19610 0.29 +0.2
4,297,027 - AO353_19610 0.30 -1.0
4,297,452 + +2.3
4,297,453 - +0.0
4,297,453 - +0.7
4,297,482 + -0.3
4,297,482 + +0.2
4,297,483 - -0.9
4,297,495 - -0.5

Or see this region's nucleotide sequence