Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03360

Experiment: syringaldehyde 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03350 and AO353_03355 are separated by 17 nucleotidesAO353_03355 and AO353_03360 overlap by 14 nucleotidesAO353_03360 and AO353_03365 are separated by 197 nucleotides AO353_03350: AO353_03350 - keto-deoxy-phosphogluconate aldolase, at 713,020 to 713,685 _03350 AO353_03355: AO353_03355 - 6-phosphogluconolactonase, at 713,703 to 714,416 _03355 AO353_03360: AO353_03360 - glucose-6-phosphate dehydrogenase, at 714,403 to 715,872 _03360 AO353_03365: AO353_03365 - transcriptional regulator, at 716,070 to 716,939 _03365 Position (kb) 714 715 716Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 714.565 kb on - strand, within AO353_03360at 714.618 kb on - strand, within AO353_03360at 714.645 kb on - strand, within AO353_03360at 714.736 kb on - strand, within AO353_03360at 714.736 kb on - strand, within AO353_03360at 714.807 kb on - strand, within AO353_03360at 714.879 kb on - strand, within AO353_03360at 715.013 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.017 kb on - strand, within AO353_03360at 715.206 kb on - strand, within AO353_03360at 715.266 kb on - strand, within AO353_03360at 715.266 kb on - strand, within AO353_03360at 715.347 kb on - strand, within AO353_03360at 715.347 kb on - strand, within AO353_03360at 715.362 kb on - strand, within AO353_03360at 715.362 kb on - strand, within AO353_03360at 715.362 kb on - strand, within AO353_03360at 715.362 kb on - strand, within AO353_03360at 715.362 kb on - strand, within AO353_03360at 715.362 kb on - strand, within AO353_03360at 715.362 kb on - strand, within AO353_03360at 715.362 kb on - strand, within AO353_03360at 715.383 kb on - strand, within AO353_03360at 715.506 kb on - strand, within AO353_03360at 715.530 kb on - strand, within AO353_03360at 715.530 kb on - strand, within AO353_03360at 715.530 kb on - strand, within AO353_03360at 715.578 kb on - strand, within AO353_03360at 715.578 kb on - strand, within AO353_03360at 715.611 kb on - strand, within AO353_03360at 715.611 kb on - strand, within AO353_03360at 715.611 kb on - strand, within AO353_03360at 715.671 kb on - strand, within AO353_03360at 715.671 kb on - strand, within AO353_03360at 715.671 kb on - strand, within AO353_03360at 715.693 kb on - strand, within AO353_03360at 715.693 kb on - strand, within AO353_03360at 715.693 kb on - strand, within AO353_03360at 715.693 kb on - strand, within AO353_03360at 715.785 kb on - strandat 715.785 kb on - strandat 715.785 kb on - strandat 715.968 kb on + strandat 715.969 kb on - strandat 715.969 kb on - strandat 715.970 kb on + strandat 716.004 kb on + strandat 716.009 kb on + strandat 716.010 kb on - strandat 716.050 kb on - strandat 716.058 kb on + strandat 716.058 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.189 kb on + strand, within AO353_03365at 716.190 kb on - strand, within AO353_03365at 716.319 kb on + strand, within AO353_03365at 716.319 kb on + strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.361 kb on + strand, within AO353_03365at 716.361 kb on + strand, within AO353_03365at 716.361 kb on + strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.631 kb on + strand, within AO353_03365at 716.632 kb on - strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strandat 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
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714,565 - AO353_03360 0.11 +0.3
714,618 - AO353_03360 0.15 -0.2
714,645 - AO353_03360 0.16 +0.8
714,736 - AO353_03360 0.23 -2.5
714,736 - AO353_03360 0.23 -0.1
714,807 - AO353_03360 0.27 -1.2
714,879 - AO353_03360 0.32 -1.0
715,013 - AO353_03360 0.41 -1.2
715,017 - AO353_03360 0.42 -2.6
715,017 - AO353_03360 0.42 +0.3
715,017 - AO353_03360 0.42 -0.7
715,017 - AO353_03360 0.42 -1.2
715,017 - AO353_03360 0.42 -2.2
715,017 - AO353_03360 0.42 -1.7
715,017 - AO353_03360 0.42 -1.0
715,017 - AO353_03360 0.42 -2.3
715,017 - AO353_03360 0.42 -2.5
715,206 - AO353_03360 0.55 -0.6
715,266 - AO353_03360 0.59 -2.5
715,266 - AO353_03360 0.59 -2.3
715,347 - AO353_03360 0.64 -0.7
715,347 - AO353_03360 0.64 -0.5
715,362 - AO353_03360 0.65 +2.4
715,362 - AO353_03360 0.65 -2.0
715,362 - AO353_03360 0.65 +0.8
715,362 - AO353_03360 0.65 -0.7
715,362 - AO353_03360 0.65 -1.6
715,362 - AO353_03360 0.65 -3.3
715,362 - AO353_03360 0.65 -0.7
715,362 - AO353_03360 0.65 -2.3
715,383 - AO353_03360 0.67 -1.0
715,506 - AO353_03360 0.75 -1.5
715,530 - AO353_03360 0.77 -1.2
715,530 - AO353_03360 0.77 -2.6
715,530 - AO353_03360 0.77 +0.4
715,578 - AO353_03360 0.80 -0.2
715,578 - AO353_03360 0.80 -3.7
715,611 - AO353_03360 0.82 -0.7
715,611 - AO353_03360 0.82 -1.7
715,611 - AO353_03360 0.82 -2.0
715,671 - AO353_03360 0.86 -1.2
715,671 - AO353_03360 0.86 +0.8
715,671 - AO353_03360 0.86 -1.6
715,693 - AO353_03360 0.88 -2.6
715,693 - AO353_03360 0.88 -1.2
715,693 - AO353_03360 0.88 -0.8
715,693 - AO353_03360 0.88 -1.9
715,785 - +1.8
715,785 - +0.1
715,785 - +0.1
715,968 + -0.5
715,969 - -0.7
715,969 - +1.1
715,970 + -1.7
716,004 + +0.1
716,009 + -0.2
716,010 - -0.2
716,050 - -0.1
716,058 + -1.5
716,058 + -0.6
716,067 + -1.0
716,067 + +0.1
716,067 + +0.5
716,067 + -0.4
716,067 + +0.1
716,067 + -0.7
716,067 + -0.1
716,067 + -0.2
716,067 + +0.3
716,067 + +0.3
716,067 + +0.2
716,067 + -0.7
716,067 + -0.7
716,067 + +0.7
716,068 - -0.5
716,068 - -1.5
716,068 - -0.0
716,068 - +1.8
716,068 - -0.6
716,068 - -1.7
716,189 + AO353_03365 0.14 +0.0
716,190 - AO353_03365 0.14 +0.8
716,319 + AO353_03365 0.29 +1.6
716,319 + AO353_03365 0.29 -1.9
716,320 - AO353_03365 0.29 +0.8
716,320 - AO353_03365 0.29 -0.2
716,320 - AO353_03365 0.29 +0.3
716,320 - AO353_03365 0.29 +0.8
716,320 - AO353_03365 0.29 +0.6
716,320 - AO353_03365 0.29 +0.5
716,320 - AO353_03365 0.29 +0.8
716,361 + AO353_03365 0.33 -0.7
716,361 + AO353_03365 0.33 +0.8
716,361 + AO353_03365 0.33 +0.5
716,362 - AO353_03365 0.34 -0.5
716,362 - AO353_03365 0.34 -0.1
716,362 - AO353_03365 0.34 -0.4
716,362 - AO353_03365 0.34 +1.1
716,362 - AO353_03365 0.34 +0.1
716,362 - AO353_03365 0.34 -1.2
716,362 - AO353_03365 0.34 +0.4
716,631 + AO353_03365 0.64 +1.1
716,632 - AO353_03365 0.65 -0.7
716,781 + AO353_03365 0.82 -2.1
716,781 + AO353_03365 0.82 -0.5
716,781 + AO353_03365 0.82 -0.7
716,781 + AO353_03365 0.82 +0.2
716,781 + AO353_03365 0.82 -0.0
716,781 + AO353_03365 0.82 -1.3
716,781 + AO353_03365 0.82 +0.4
716,781 + AO353_03365 0.82 +0.4
716,781 + AO353_03365 0.82 +2.2
716,781 + AO353_03365 0.82 +1.8
716,781 + AO353_03365 0.82 +0.0
716,781 + AO353_03365 0.82 -0.3
716,781 + AO353_03365 0.82 -2.7
716,781 + AO353_03365 0.82 +0.1
716,781 + AO353_03365 0.82 +1.4
716,781 + AO353_03365 0.82 -0.1
716,781 + AO353_03365 0.82 -1.0
716,782 - AO353_03365 0.82 -1.3
716,782 - AO353_03365 0.82 +1.5
716,782 - +0.8
716,782 - AO353_03365 0.82 +0.6
716,782 - AO353_03365 0.82 -0.9
716,782 - AO353_03365 0.82 +0.0
716,782 - AO353_03365 0.82 -0.5
716,782 - AO353_03365 0.82 +0.1
716,782 - AO353_03365 0.82 +0.8
716,782 - AO353_03365 0.82 -0.6
716,782 - AO353_03365 0.82 -0.1
716,782 - AO353_03365 0.82 -2.0
716,782 - AO353_03365 0.82 +0.6
716,782 - AO353_03365 0.82 +0.2
716,782 - AO353_03365 0.82 -0.2

Or see this region's nucleotide sequence