Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02455 and AO353_02460 are separated by 229 nucleotides AO353_02460 and AO353_02465 are separated by 0 nucleotides AO353_02465 and AO353_02470 overlap by 4 nucleotides AO353_02470 and AO353_02475 are separated by 115 nucleotides
AO353_02455: AO353_02455 - type IV secretion protein Rhs, at 523,787 to 528,595
_02455
AO353_02460: AO353_02460 - hypothetical protein, at 528,825 to 529,226
_02460
AO353_02465: AO353_02465 - hypothetical protein, at 529,227 to 529,598
_02465
AO353_02470: AO353_02470 - Cro/Cl family transcriptional regulator, at 529,595 to 529,936
_02470
AO353_02475: AO353_02475 - hypothetical protein, at 530,052 to 530,507
_02475
Position (kb) 528
529
530 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 527.850 kb on + strand, within AO353_02455 at 527.851 kb on - strand, within AO353_02455 at 527.898 kb on + strand, within AO353_02455 at 527.898 kb on + strand, within AO353_02455 at 527.899 kb on - strand, within AO353_02455 at 527.899 kb on - strand, within AO353_02455 at 527.976 kb on + strand, within AO353_02455 at 527.976 kb on + strand, within AO353_02455 at 527.986 kb on + strand, within AO353_02455 at 527.986 kb on + strand, within AO353_02455 at 528.081 kb on + strand, within AO353_02455 at 528.081 kb on + strand, within AO353_02455 at 528.082 kb on - strand, within AO353_02455 at 528.090 kb on + strand, within AO353_02455 at 528.090 kb on + strand, within AO353_02455 at 528.090 kb on + strand, within AO353_02455 at 528.090 kb on + strand, within AO353_02455 at 528.091 kb on - strand, within AO353_02455 at 528.091 kb on - strand, within AO353_02455 at 528.091 kb on - strand, within AO353_02455 at 528.091 kb on - strand, within AO353_02455 at 528.091 kb on - strand, within AO353_02455 at 528.127 kb on - strand at 528.468 kb on + strand at 528.469 kb on - strand at 528.469 kb on - strand at 528.469 kb on - strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.686 kb on + strand at 528.686 kb on + strand at 528.686 kb on + strand at 528.687 kb on - strand at 528.687 kb on - strand at 528.687 kb on - strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.753 kb on + strand at 528.753 kb on + strand at 528.753 kb on + strand at 528.754 kb on - strand at 528.754 kb on - strand at 528.754 kb on - strand at 528.765 kb on + strand at 528.766 kb on - strand at 528.766 kb on - strand at 528.970 kb on + strand, within AO353_02460 at 529.017 kb on + strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.195 kb on + strand at 529.195 kb on + strand at 529.255 kb on + strand at 529.256 kb on - strand at 529.513 kb on + strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.590 kb on + strand at 529.591 kb on - strand at 529.695 kb on + strand, within AO353_02470 at 529.695 kb on + strand, within AO353_02470 at 529.696 kb on - strand, within AO353_02470 at 529.696 kb on - strand, within AO353_02470 at 529.766 kb on + strand, within AO353_02470 at 529.766 kb on + strand at 529.766 kb on + strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.872 kb on + strand, within AO353_02470 at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand, within AO353_02470 at 529.887 kb on - strand, within AO353_02470 at 529.896 kb on + strand, within AO353_02470 at 529.897 kb on - strand, within AO353_02470 at 529.922 kb on + strand at 529.922 kb on + strand at 529.922 kb on + strand at 529.922 kb on + strand at 529.923 kb on - strand at 529.930 kb on + strand at 529.940 kb on + strand at 529.940 kb on + strand at 529.941 kb on - strand at 529.941 kb on - strand at 529.941 kb on - strand at 529.948 kb on - strand at 529.962 kb on + strand at 529.963 kb on - strand at 529.984 kb on - strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.992 kb on - strand at 529.998 kb on - strand at 529.998 kb on - strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.080 kb on - strand at 530.080 kb on - strand at 530.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 527,850 + AO353_02455 0.84 +0.2 527,851 - AO353_02455 0.85 +1.4 527,898 + AO353_02455 0.85 +3.1 527,898 + AO353_02455 0.85 -0.4 527,899 - AO353_02455 0.86 +1.0 527,899 - AO353_02455 0.86 +1.0 527,976 + AO353_02455 0.87 +0.8 527,976 + AO353_02455 0.87 -0.1 527,986 + AO353_02455 0.87 -1.0 527,986 + AO353_02455 0.87 -1.0 528,081 + AO353_02455 0.89 -0.4 528,081 + AO353_02455 0.89 -1.0 528,082 - AO353_02455 0.89 +0.2 528,090 + AO353_02455 0.89 -2.0 528,090 + AO353_02455 0.89 -2.5 528,090 + AO353_02455 0.89 +0.2 528,090 + AO353_02455 0.89 +1.4 528,091 - AO353_02455 0.89 -1.5 528,091 - AO353_02455 0.89 -0.8 528,091 - AO353_02455 0.89 +0.9 528,091 - AO353_02455 0.89 -1.0 528,091 - AO353_02455 0.89 -0.2 528,127 - -1.8 528,468 + -1.8 528,469 - +1.1 528,469 - -0.8 528,469 - +0.9 528,681 + -0.5 528,681 + +1.0 528,681 + -0.4 528,681 + +0.8 528,681 + -2.0 528,681 + -0.2 528,681 + -0.4 528,681 + +0.8 528,682 - +1.1 528,682 - -1.5 528,682 - -1.8 528,682 - +0.3 528,682 - +1.6 528,686 + +1.3 528,686 + -2.0 528,686 + +0.3 528,687 - -0.2 528,687 - -0.2 528,687 - +0.8 528,748 + +1.2 528,748 + -0.6 528,749 - +0.6 528,749 - +1.2 528,749 - -1.5 528,749 - -0.2 528,753 + -1.2 528,753 + -1.8 528,753 + +0.1 528,754 - +0.2 528,754 - -0.2 528,754 - -0.2 528,765 + +0.1 528,766 - -0.8 528,766 - +0.3 528,970 + AO353_02460 0.36 +0.7 529,017 + AO353_02460 0.48 +0.8 529,018 - AO353_02460 0.48 +0.7 529,018 - AO353_02460 0.48 +0.2 529,018 - AO353_02460 0.48 +1.3 529,018 - AO353_02460 0.48 -0.3 529,018 - AO353_02460 0.48 +1.1 529,072 + AO353_02460 0.61 +0.2 529,072 + AO353_02460 0.61 +0.8 529,072 + AO353_02460 0.61 +0.5 529,072 + AO353_02460 0.61 +0.2 529,072 + AO353_02460 0.61 +0.4 529,072 + AO353_02460 0.61 +0.5 529,072 + AO353_02460 0.61 +0.2 529,072 + AO353_02460 0.61 -0.4 529,073 - AO353_02460 0.62 +0.3 529,073 - AO353_02460 0.62 +1.5 529,073 - AO353_02460 0.62 -0.6 529,073 - AO353_02460 0.62 +1.2 529,073 - AO353_02460 0.62 -0.7 529,195 + +0.1 529,195 + +0.2 529,255 + -0.5 529,256 - +1.8 529,513 + AO353_02465 0.77 +0.1 529,514 - AO353_02465 0.77 +0.6 529,514 - AO353_02465 0.77 -0.2 529,514 - AO353_02465 0.77 +1.2 529,590 + +0.5 529,591 - +2.8 529,695 + AO353_02470 0.29 +2.4 529,695 + AO353_02470 0.29 +0.2 529,696 - AO353_02470 0.30 -0.2 529,696 - AO353_02470 0.30 -0.0 529,766 + AO353_02470 0.50 -0.1 529,766 + -0.8 529,766 + AO353_02470 0.50 -2.0 529,767 - AO353_02470 0.50 +0.1 529,767 - AO353_02470 0.50 +0.9 529,767 - AO353_02470 0.50 -0.4 529,767 - AO353_02470 0.50 +0.2 529,767 - AO353_02470 0.50 +1.2 529,767 - AO353_02470 0.50 +0.1 529,872 + AO353_02470 0.81 -0.4 529,886 + AO353_02470 0.85 +0.1 529,886 + +0.2 529,886 + AO353_02470 0.85 -0.9 529,886 + +0.8 529,886 + AO353_02470 0.85 -0.8 529,886 + AO353_02470 0.85 +1.3 529,887 - AO353_02470 0.85 -0.2 529,896 + AO353_02470 0.88 +1.1 529,897 - AO353_02470 0.88 +0.5 529,922 + +0.3 529,922 + +0.2 529,922 + -0.4 529,922 + +0.5 529,923 - -0.0 529,930 + -0.6 529,940 + +1.1 529,940 + -0.6 529,941 - -0.2 529,941 - +1.8 529,941 - +1.4 529,948 - -0.4 529,962 + -1.7 529,963 - -1.5 529,984 - -0.4 529,991 + +0.8 529,991 + -0.5 529,991 + +0.8 529,991 + -0.1 529,992 - -0.9 529,998 - +0.8 529,998 - +0.5 530,079 + -0.0 530,079 + +0.3 530,079 + +0.5 530,079 + +0.8 530,079 + +0.4 530,080 - -2.0 530,080 - -0.2 530,080 - -1.8
Or see this region's nucleotide sequence