Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01690

Experiment: syringaldehyde 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01680 and AO353_01685 are separated by 111 nucleotidesAO353_01685 and AO353_01690 are separated by 168 nucleotidesAO353_01690 and AO353_01695 are separated by 71 nucleotidesAO353_01695 and AO353_01700 are separated by 23 nucleotides AO353_01680: AO353_01680 - histidine kinase, at 353,571 to 354,611 _01680 AO353_01685: AO353_01685 - hypothetical protein, at 354,723 to 355,127 _01685 AO353_01690: AO353_01690 - hypothetical protein, at 355,296 to 356,348 _01690 AO353_01695: AO353_01695 - hypothetical protein, at 356,420 to 357,226 _01695 AO353_01700: AO353_01700 - glutathione S-transferase, at 357,250 to 357,909 _01700 Position (kb) 355 356 357Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 354.550 kb on + strandat 354.551 kb on - strandat 354.551 kb on - strandat 354.551 kb on - strandat 354.635 kb on - strandat 354.647 kb on + strandat 354.647 kb on + strandat 354.647 kb on + strandat 354.701 kb on + strandat 354.701 kb on + strandat 354.702 kb on - strandat 354.743 kb on + strandat 354.743 kb on + strandat 354.743 kb on + strandat 354.744 kb on - strandat 354.744 kb on - strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.753 kb on + strandat 354.754 kb on - strandat 354.754 kb on - strandat 354.754 kb on - strandat 354.755 kb on + strandat 354.755 kb on + strandat 354.756 kb on - strandat 354.777 kb on + strand, within AO353_01685at 354.778 kb on - strand, within AO353_01685at 354.866 kb on + strand, within AO353_01685at 354.866 kb on + strand, within AO353_01685at 355.131 kb on + strandat 355.143 kb on - strandat 355.352 kb on - strandat 355.352 kb on - strandat 355.471 kb on + strand, within AO353_01690at 355.506 kb on - strand, within AO353_01690at 355.506 kb on - strand, within AO353_01690at 355.506 kb on - strand, within AO353_01690at 355.632 kb on - strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.759 kb on + strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.760 kb on - strand, within AO353_01690at 355.933 kb on + strand, within AO353_01690at 355.934 kb on - strand, within AO353_01690at 356.109 kb on - strand, within AO353_01690at 356.421 kb on + strandat 356.657 kb on + strand, within AO353_01695at 356.657 kb on + strand, within AO353_01695at 356.657 kb on + strand, within AO353_01695at 356.658 kb on - strand, within AO353_01695at 356.658 kb on - strand, within AO353_01695at 356.727 kb on + strand, within AO353_01695at 356.727 kb on + strand, within AO353_01695at 356.728 kb on - strand, within AO353_01695at 356.728 kb on - strand, within AO353_01695at 356.757 kb on + strand, within AO353_01695at 356.757 kb on + strand, within AO353_01695at 356.758 kb on - strand, within AO353_01695at 356.808 kb on + strand, within AO353_01695at 356.808 kb on + strand, within AO353_01695at 356.808 kb on + strand, within AO353_01695at 356.808 kb on + strand, within AO353_01695at 356.808 kb on + strand, within AO353_01695at 356.809 kb on - strand, within AO353_01695at 356.809 kb on - strand, within AO353_01695at 356.809 kb on - strand, within AO353_01695at 356.832 kb on + strand, within AO353_01695at 356.832 kb on + strand, within AO353_01695at 356.833 kb on - strand, within AO353_01695at 356.988 kb on + strand, within AO353_01695at 356.988 kb on + strand, within AO353_01695at 356.988 kb on + strand, within AO353_01695at 356.989 kb on - strand, within AO353_01695at 356.989 kb on - strand, within AO353_01695at 356.989 kb on - strand, within AO353_01695at 357.075 kb on + strand, within AO353_01695at 357.075 kb on + strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.164 kb on + strandat 357.165 kb on - strandat 357.245 kb on + strandat 357.245 kb on + strandat 357.245 kb on + strandat 357.245 kb on + strandat 357.245 kb on + strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.300 kb on + strandat 357.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
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354,550 + +0.7
354,551 - +1.7
354,551 - +0.6
354,551 - +0.3
354,635 - -0.7
354,647 + +0.7
354,647 + -3.4
354,647 + -0.4
354,701 + -0.2
354,701 + -0.0
354,702 - +1.0
354,743 + -0.5
354,743 + +2.3
354,743 + +1.3
354,744 - -1.3
354,744 - +0.4
354,753 + +0.7
354,753 + +0.4
354,753 + +0.0
354,753 + +0.2
354,753 + +0.6
354,753 + -0.5
354,754 - +0.6
354,754 - -1.8
354,754 - -0.6
354,755 + +0.2
354,755 + -0.3
354,756 - -1.0
354,777 + AO353_01685 0.13 -2.1
354,778 - AO353_01685 0.14 -0.8
354,866 + AO353_01685 0.35 +1.3
354,866 + AO353_01685 0.35 +0.7
355,131 + +0.7
355,143 - -0.6
355,352 - +0.4
355,352 - -0.8
355,471 + AO353_01690 0.17 +1.7
355,506 - AO353_01690 0.20 -1.3
355,506 - AO353_01690 0.20 +0.7
355,506 - AO353_01690 0.20 -1.0
355,632 - AO353_01690 0.32 -0.6
355,759 + AO353_01690 0.44 -0.4
355,759 + AO353_01690 0.44 -0.6
355,759 + AO353_01690 0.44 -0.8
355,759 + AO353_01690 0.44 -0.6
355,759 + AO353_01690 0.44 +0.2
355,759 + AO353_01690 0.44 +0.3
355,759 + AO353_01690 0.44 -0.3
355,759 + AO353_01690 0.44 -0.3
355,759 + AO353_01690 0.44 -1.5
355,760 - AO353_01690 0.44 -0.3
355,760 - AO353_01690 0.44 +0.4
355,760 - AO353_01690 0.44 -0.7
355,760 - AO353_01690 0.44 -2.4
355,760 - AO353_01690 0.44 -1.0
355,760 - AO353_01690 0.44 -0.7
355,760 - AO353_01690 0.44 +0.1
355,760 - AO353_01690 0.44 -0.7
355,933 + AO353_01690 0.60 +0.5
355,934 - AO353_01690 0.61 -2.1
356,109 - AO353_01690 0.77 -0.1
356,421 + +0.0
356,657 + AO353_01695 0.29 -1.1
356,657 + AO353_01695 0.29 -1.3
356,657 + AO353_01695 0.29 +0.3
356,658 - AO353_01695 0.29 -0.8
356,658 - AO353_01695 0.29 -0.8
356,727 + AO353_01695 0.38 +0.3
356,727 + AO353_01695 0.38 +1.3
356,728 - AO353_01695 0.38 -0.4
356,728 - AO353_01695 0.38 +0.0
356,757 + AO353_01695 0.42 -0.1
356,757 + AO353_01695 0.42 +1.3
356,758 - AO353_01695 0.42 +1.6
356,808 + AO353_01695 0.48 +0.1
356,808 + AO353_01695 0.48 -0.1
356,808 + AO353_01695 0.48 -1.9
356,808 + AO353_01695 0.48 +0.3
356,808 + AO353_01695 0.48 +1.2
356,809 - AO353_01695 0.48 +0.7
356,809 - AO353_01695 0.48 +0.0
356,809 - AO353_01695 0.48 +1.4
356,832 + AO353_01695 0.51 -1.3
356,832 + AO353_01695 0.51 +0.7
356,833 - AO353_01695 0.51 +0.6
356,988 + AO353_01695 0.70 -1.0
356,988 + AO353_01695 0.70 +0.7
356,988 + AO353_01695 0.70 -0.6
356,989 - AO353_01695 0.71 -0.1
356,989 - AO353_01695 0.71 +0.2
356,989 - AO353_01695 0.71 +0.3
357,075 + AO353_01695 0.81 +2.2
357,075 + AO353_01695 0.81 +2.0
357,076 - AO353_01695 0.81 -0.2
357,076 - AO353_01695 0.81 -1.1
357,076 - AO353_01695 0.81 -0.6
357,076 - AO353_01695 0.81 -0.7
357,076 - AO353_01695 0.81 -0.4
357,164 + +0.1
357,165 - -0.6
357,245 + +0.0
357,245 + +1.7
357,245 + -0.8
357,245 + -0.8
357,245 + -0.3
357,246 - -1.1
357,246 - -0.9
357,246 - +2.3
357,246 - +0.2
357,246 - -0.4
357,246 - +0.3
357,300 + -0.4
357,301 - +0.4

Or see this region's nucleotide sequence