Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00585 and AO353_00590 are separated by 10 nucleotides AO353_00590 and AO353_00595 are separated by 9 nucleotides AO353_00595 and AO353_00600 overlap by 4 nucleotides AO353_00600 and AO353_00605 are separated by 483 nucleotides
AO353_00585: AO353_00585 - cytochrome C oxidase Cbb3, at 124,447 to 125,871
_00585
AO353_00590: AO353_00590 - cytochrome C oxidase Cbb3, at 125,882 to 126,490
_00590
AO353_00595: AO353_00595 - cytochrome C oxidase, at 126,500 to 126,706
_00595
AO353_00600: AO353_00600 - cytochrome C oxidase Cbb3, at 126,703 to 127,656
_00600
AO353_00605: AO353_00605 - cytochrome C oxidase Cbb3, at 128,140 to 129,582
_00605
Position (kb) 126
127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 125.708 kb on - strand, within AO353_00585 at 125.708 kb on - strand, within AO353_00585 at 125.746 kb on + strand at 125.746 kb on + strand at 125.746 kb on + strand at 125.747 kb on - strand at 125.747 kb on - strand at 125.803 kb on + strand at 125.803 kb on + strand at 125.803 kb on + strand at 125.804 kb on - strand at 125.804 kb on - strand at 125.804 kb on - strand at 125.804 kb on - strand at 126.023 kb on + strand, within AO353_00590 at 126.023 kb on + strand, within AO353_00590 at 126.023 kb on + strand, within AO353_00590 at 126.024 kb on - strand, within AO353_00590 at 126.024 kb on - strand, within AO353_00590 at 126.056 kb on + strand, within AO353_00590 at 126.056 kb on + strand, within AO353_00590 at 126.056 kb on + strand, within AO353_00590 at 126.057 kb on - strand, within AO353_00590 at 126.057 kb on - strand, within AO353_00590 at 126.057 kb on - strand, within AO353_00590 at 126.057 kb on - strand, within AO353_00590 at 126.057 kb on - strand, within AO353_00590 at 126.057 kb on - strand, within AO353_00590 at 126.254 kb on + strand, within AO353_00590 at 126.255 kb on - strand, within AO353_00590 at 126.255 kb on - strand, within AO353_00590 at 126.255 kb on - strand, within AO353_00590 at 126.377 kb on + strand, within AO353_00590 at 126.378 kb on - strand, within AO353_00590 at 126.449 kb on + strand at 126.450 kb on - strand at 126.513 kb on + strand at 126.513 kb on + strand at 126.513 kb on + strand at 126.514 kb on - strand at 126.514 kb on - strand at 126.514 kb on - strand at 126.518 kb on - strand at 126.720 kb on + strand at 126.720 kb on + strand at 126.720 kb on + strand at 126.721 kb on - strand at 126.850 kb on + strand, within AO353_00600 at 126.850 kb on + strand, within AO353_00600 at 126.851 kb on - strand, within AO353_00600 at 126.851 kb on - strand, within AO353_00600 at 126.851 kb on - strand, within AO353_00600 at 126.851 kb on - strand, within AO353_00600 at 126.851 kb on - strand, within AO353_00600 at 126.851 kb on - strand, within AO353_00600 at 126.851 kb on - strand, within AO353_00600 at 126.851 kb on - strand, within AO353_00600 at 126.957 kb on - strand at 126.957 kb on - strand, within AO353_00600 at 126.957 kb on - strand, within AO353_00600 at 127.043 kb on - strand, within AO353_00600 at 127.043 kb on - strand, within AO353_00600 at 127.277 kb on + strand, within AO353_00600 at 127.277 kb on + strand, within AO353_00600 at 127.277 kb on + strand, within AO353_00600 at 127.277 kb on + strand, within AO353_00600 at 127.278 kb on - strand, within AO353_00600 at 127.278 kb on - strand, within AO353_00600 at 127.278 kb on - strand, within AO353_00600 at 127.278 kb on - strand, within AO353_00600 at 127.278 kb on - strand, within AO353_00600 at 127.312 kb on + strand, within AO353_00600 at 127.312 kb on + strand, within AO353_00600 at 127.312 kb on + strand, within AO353_00600 at 127.312 kb on + strand, within AO353_00600 at 127.312 kb on + strand, within AO353_00600 at 127.313 kb on - strand, within AO353_00600 at 127.313 kb on - strand, within AO353_00600 at 127.404 kb on - strand, within AO353_00600 at 127.480 kb on + strand, within AO353_00600 at 127.480 kb on + strand, within AO353_00600 at 127.480 kb on + strand, within AO353_00600 at 127.591 kb on + strand at 127.591 kb on + strand at 127.592 kb on - strand at 127.592 kb on - strand at 127.592 kb on - strand at 127.592 kb on - strand at 127.592 kb on - strand at 127.592 kb on - strand at 127.592 kb on - strand at 127.597 kb on + strand at 127.597 kb on + strand at 127.597 kb on + strand at 127.597 kb on + strand at 127.597 kb on + strand at 127.597 kb on + strand at 127.597 kb on + strand at 127.598 kb on - strand at 127.598 kb on - strand at 127.598 kb on - strand at 127.598 kb on - strand at 127.598 kb on - strand at 127.598 kb on - strand at 127.654 kb on + strand at 127.654 kb on + strand at 127.654 kb on + strand at 127.769 kb on + strand at 127.769 kb on + strand at 127.817 kb on + strand at 127.817 kb on + strand at 127.818 kb on - strand at 127.866 kb on + strand at 127.866 kb on + strand at 127.867 kb on - strand at 127.867 kb on - strand at 127.930 kb on + strand at 127.931 kb on - strand at 127.931 kb on - strand at 127.999 kb on - strand at 128.086 kb on + strand at 128.086 kb on + strand at 128.109 kb on + strand at 128.110 kb on - strand at 128.112 kb on + strand at 128.112 kb on + strand at 128.112 kb on + strand at 128.112 kb on + strand at 128.113 kb on - strand at 128.121 kb on + strand at 128.167 kb on + strand at 128.167 kb on + strand at 128.169 kb on + strand at 128.170 kb on - strand at 128.170 kb on - strand at 128.173 kb on + strand at 128.173 kb on + strand at 128.174 kb on - strand at 128.174 kb on - strand at 128.175 kb on + strand at 128.175 kb on + strand at 128.176 kb on - strand at 128.176 kb on - strand at 128.374 kb on + strand, within AO353_00605 at 128.378 kb on - strand, within AO353_00605 at 128.614 kb on + strand, within AO353_00605 at 128.614 kb on + strand, within AO353_00605 at 128.615 kb on - strand, within AO353_00605 at 128.615 kb on - strand, within AO353_00605 at 128.632 kb on + strand, within AO353_00605
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 125,708 - AO353_00585 0.88 -0.7 125,708 - AO353_00585 0.88 -0.3 125,746 + -0.7 125,746 + -0.1 125,746 + -0.7 125,747 - -0.3 125,747 - +1.3 125,803 + +0.1 125,803 + -0.2 125,803 + +0.3 125,804 - -3.5 125,804 - -1.9 125,804 - -0.6 125,804 - -0.8 126,023 + AO353_00590 0.23 +0.1 126,023 + AO353_00590 0.23 -0.3 126,023 + AO353_00590 0.23 -0.1 126,024 - AO353_00590 0.23 -0.3 126,024 - AO353_00590 0.23 +0.3 126,056 + AO353_00590 0.29 -0.0 126,056 + AO353_00590 0.29 +1.2 126,056 + AO353_00590 0.29 +0.7 126,057 - AO353_00590 0.29 -0.5 126,057 - AO353_00590 0.29 -0.9 126,057 - AO353_00590 0.29 -0.2 126,057 - AO353_00590 0.29 -1.5 126,057 - AO353_00590 0.29 -3.0 126,057 - AO353_00590 0.29 +2.3 126,254 + AO353_00590 0.61 +0.2 126,255 - AO353_00590 0.61 +2.7 126,255 - AO353_00590 0.61 -1.2 126,255 - AO353_00590 0.61 +0.5 126,377 + AO353_00590 0.81 +0.5 126,378 - AO353_00590 0.81 +0.1 126,449 + +0.7 126,450 - -0.9 126,513 + +0.7 126,513 + -1.0 126,513 + +1.1 126,514 - +1.1 126,514 - +0.2 126,514 - +0.4 126,518 - -1.3 126,720 + -0.6 126,720 + -1.1 126,720 + +0.9 126,721 - +0.7 126,850 + AO353_00600 0.15 -1.0 126,850 + AO353_00600 0.15 -0.0 126,851 - AO353_00600 0.16 +0.5 126,851 - AO353_00600 0.16 +0.1 126,851 - AO353_00600 0.16 +0.1 126,851 - AO353_00600 0.16 -0.2 126,851 - AO353_00600 0.16 -0.5 126,851 - AO353_00600 0.16 -0.0 126,851 - AO353_00600 0.16 -0.9 126,851 - AO353_00600 0.16 -0.9 126,957 - -0.3 126,957 - AO353_00600 0.27 -0.3 126,957 - AO353_00600 0.27 -0.9 127,043 - AO353_00600 0.36 -0.6 127,043 - AO353_00600 0.36 -1.3 127,277 + AO353_00600 0.60 -2.1 127,277 + AO353_00600 0.60 -0.8 127,277 + AO353_00600 0.60 -1.5 127,277 + AO353_00600 0.60 +0.1 127,278 - AO353_00600 0.60 +0.7 127,278 - AO353_00600 0.60 -0.3 127,278 - AO353_00600 0.60 -0.2 127,278 - AO353_00600 0.60 +0.7 127,278 - AO353_00600 0.60 -2.3 127,312 + AO353_00600 0.64 -1.7 127,312 + AO353_00600 0.64 -0.9 127,312 + AO353_00600 0.64 +0.7 127,312 + AO353_00600 0.64 -0.3 127,312 + AO353_00600 0.64 +0.7 127,313 - AO353_00600 0.64 -0.6 127,313 - AO353_00600 0.64 -0.6 127,404 - AO353_00600 0.73 -0.7 127,480 + AO353_00600 0.81 -0.5 127,480 + AO353_00600 0.81 -0.9 127,480 + AO353_00600 0.81 -1.2 127,591 + -0.8 127,591 + -0.5 127,592 - -0.1 127,592 - +0.7 127,592 - +0.4 127,592 - +0.7 127,592 - +0.7 127,592 - +0.1 127,592 - -0.9 127,597 + -0.3 127,597 + -0.0 127,597 + -3.0 127,597 + +0.4 127,597 + +0.1 127,597 + +0.7 127,597 + +0.7 127,598 - +0.3 127,598 - -0.3 127,598 - +0.7 127,598 - +1.0 127,598 - -0.3 127,598 - +1.1 127,654 + -1.1 127,654 + +0.7 127,654 + +0.5 127,769 + -0.9 127,769 + +0.0 127,817 + +0.9 127,817 + +0.7 127,818 - -0.4 127,866 + -0.6 127,866 + -0.3 127,867 - -0.3 127,867 - -0.7 127,930 + -0.2 127,931 - +0.3 127,931 - +0.3 127,999 - +0.7 128,086 + +0.3 128,086 + +1.4 128,109 + -1.6 128,110 - -2.5 128,112 + -0.1 128,112 + -1.3 128,112 + +0.7 128,112 + -1.9 128,113 - -0.3 128,121 + -1.9 128,167 + -1.0 128,167 + -1.1 128,169 + -1.9 128,170 - -2.2 128,170 - -0.6 128,173 + -0.8 128,173 + -1.1 128,174 - +0.7 128,174 - -1.6 128,175 + -2.1 128,175 + -0.3 128,176 - +0.3 128,176 - +0.1 128,374 + AO353_00605 0.16 -1.0 128,378 - AO353_00605 0.16 +2.1 128,614 + AO353_00605 0.33 +0.1 128,614 + AO353_00605 0.33 +0.1 128,615 - AO353_00605 0.33 +2.3 128,615 - AO353_00605 0.33 -0.9 128,632 + AO353_00605 0.34 +1.7
Or see this region's nucleotide sequence