Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00275

Experiment: syringaldehyde 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00270 and AO353_00275 are separated by 31 nucleotidesAO353_00275 and AO353_00280 are separated by 77 nucleotidesAO353_00280 and AO353_00285 overlap by 4 nucleotidesAO353_00285 and AO353_00290 are separated by 1 nucleotides AO353_00270: AO353_00270 - toprim domain protein, at 47,010 to 49,703 _00270 AO353_00275: AO353_00275 - hypothetical protein, at 49,735 to 50,130 _00275 AO353_00280: AO353_00280 - hypothetical protein, at 50,208 to 50,474 _00280 AO353_00285: AO353_00285 - Pyocin activator protein PrtN, at 50,471 to 50,746 _00285 AO353_00290: AO353_00290 - integrase, at 50,748 to 51,872 _00290 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.741 kb on - strand, within AO353_00270at 48.778 kb on - strand, within AO353_00270at 48.907 kb on - strand, within AO353_00270at 48.907 kb on - strand, within AO353_00270at 48.934 kb on - strand, within AO353_00270at 48.934 kb on - strand, within AO353_00270at 48.934 kb on - strand, within AO353_00270at 48.934 kb on - strand, within AO353_00270at 48.934 kb on - strand, within AO353_00270at 48.965 kb on - strand, within AO353_00270at 49.037 kb on - strand, within AO353_00270at 49.037 kb on - strand, within AO353_00270at 49.058 kb on - strand, within AO353_00270at 49.058 kb on - strand, within AO353_00270at 49.058 kb on - strand, within AO353_00270at 49.070 kb on - strand, within AO353_00270at 49.228 kb on - strand, within AO353_00270at 49.228 kb on - strand, within AO353_00270at 49.228 kb on - strand, within AO353_00270at 49.444 kb on - strandat 49.444 kb on - strandat 49.444 kb on - strandat 49.450 kb on - strandat 49.450 kb on - strandat 49.662 kb on - strandat 49.662 kb on - strandat 49.662 kb on - strandat 49.761 kb on - strandat 49.761 kb on - strandat 49.761 kb on - strandat 49.761 kb on - strandat 49.773 kb on - strandat 49.869 kb on - strand, within AO353_00275at 49.869 kb on - strand, within AO353_00275at 49.883 kb on - strand, within AO353_00275at 49.883 kb on - strand, within AO353_00275at 49.917 kb on - strand, within AO353_00275at 49.934 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.957 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 49.961 kb on - strand, within AO353_00275at 50.085 kb on - strand, within AO353_00275at 50.085 kb on - strand, within AO353_00275at 50.085 kb on - strand, within AO353_00275at 50.085 kb on - strand, within AO353_00275at 50.148 kb on - strandat 50.205 kb on - strandat 50.205 kb on - strandat 50.205 kb on - strandat 50.464 kb on + strandat 50.464 kb on + strandat 50.470 kb on + strandat 50.470 kb on + strandat 50.470 kb on + strandat 50.501 kb on + strand, within AO353_00285at 50.501 kb on + strand, within AO353_00285at 50.501 kb on + strand, within AO353_00285at 50.502 kb on - strand, within AO353_00285at 50.502 kb on - strand, within AO353_00285at 50.502 kb on - strand, within AO353_00285at 50.518 kb on + strand, within AO353_00285at 50.518 kb on + strand, within AO353_00285at 50.519 kb on - strand, within AO353_00285at 50.546 kb on + strand, within AO353_00285at 50.546 kb on + strand, within AO353_00285at 50.546 kb on + strand, within AO353_00285at 50.547 kb on - strand, within AO353_00285at 50.547 kb on - strand, within AO353_00285at 50.547 kb on - strand, within AO353_00285at 50.547 kb on - strand, within AO353_00285at 50.601 kb on + strand, within AO353_00285at 50.602 kb on - strand, within AO353_00285at 50.602 kb on - strand, within AO353_00285at 50.602 kb on - strand, within AO353_00285at 50.602 kb on - strand, within AO353_00285at 50.602 kb on - strand, within AO353_00285at 50.675 kb on + strand, within AO353_00285at 50.675 kb on + strand, within AO353_00285at 50.675 kb on + strand, within AO353_00285at 50.722 kb on - strandat 50.740 kb on + strandat 50.740 kb on + strandat 50.741 kb on - strandat 50.741 kb on - strandat 50.744 kb on + strandat 50.744 kb on + strandat 50.744 kb on + strandat 50.744 kb on + strandat 50.744 kb on + strandat 50.744 kb on + strandat 50.745 kb on - strandat 50.745 kb on - strandat 50.745 kb on - strandat 50.776 kb on - strandat 50.787 kb on + strandat 50.838 kb on + strandat 50.839 kb on - strandat 50.839 kb on - strandat 50.979 kb on + strand, within AO353_00290at 50.979 kb on + strand, within AO353_00290at 50.979 kb on + strand, within AO353_00290at 50.980 kb on - strand, within AO353_00290at 51.034 kb on - strand, within AO353_00290at 51.034 kb on - strand, within AO353_00290at 51.034 kb on - strand, within AO353_00290at 51.042 kb on + strand, within AO353_00290at 51.087 kb on + strand, within AO353_00290at 51.087 kb on + strand, within AO353_00290at 51.087 kb on + strand, within AO353_00290at 51.087 kb on + strand, within AO353_00290at 51.088 kb on - strand, within AO353_00290at 51.088 kb on - strand, within AO353_00290at 51.088 kb on - strand, within AO353_00290

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
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48,741 - AO353_00270 0.64 +2.3
48,778 - AO353_00270 0.66 -0.5
48,907 - AO353_00270 0.70 +1.1
48,907 - AO353_00270 0.70 -1.6
48,934 - AO353_00270 0.71 -0.9
48,934 - AO353_00270 0.71 -0.4
48,934 - AO353_00270 0.71 -1.5
48,934 - AO353_00270 0.71 -0.7
48,934 - AO353_00270 0.71 +1.3
48,965 - AO353_00270 0.73 +0.7
49,037 - AO353_00270 0.75 +1.7
49,037 - AO353_00270 0.75 +0.7
49,058 - AO353_00270 0.76 -0.2
49,058 - AO353_00270 0.76 -0.3
49,058 - AO353_00270 0.76 +0.3
49,070 - AO353_00270 0.76 -0.2
49,228 - AO353_00270 0.82 +0.9
49,228 - AO353_00270 0.82 -0.1
49,228 - AO353_00270 0.82 -0.0
49,444 - +0.1
49,444 - -0.3
49,444 - +0.7
49,450 - +1.3
49,450 - +0.3
49,662 - +0.4
49,662 - +0.7
49,662 - +1.0
49,761 - +0.7
49,761 - +0.1
49,761 - -0.3
49,761 - +0.3
49,773 - +0.1
49,869 - AO353_00275 0.34 +0.7
49,869 - AO353_00275 0.34 +2.7
49,883 - AO353_00275 0.37 +0.7
49,883 - AO353_00275 0.37 +0.5
49,917 - AO353_00275 0.46 -0.4
49,934 - AO353_00275 0.50 -1.3
49,957 - AO353_00275 0.56 -0.8
49,957 - AO353_00275 0.56 -0.5
49,957 - AO353_00275 0.56 -1.6
49,957 - AO353_00275 0.56 +0.0
49,957 - AO353_00275 0.56 -0.4
49,957 - AO353_00275 0.56 +0.7
49,957 - AO353_00275 0.56 -1.3
49,957 - AO353_00275 0.56 -0.1
49,957 - AO353_00275 0.56 -2.2
49,957 - AO353_00275 0.56 -0.1
49,957 - AO353_00275 0.56 -1.1
49,957 - AO353_00275 0.56 +0.0
49,957 - AO353_00275 0.56 -1.8
49,957 - AO353_00275 0.56 +1.0
49,957 - AO353_00275 0.56 +0.6
49,957 - AO353_00275 0.56 -0.3
49,961 - AO353_00275 0.57 -0.5
49,961 - AO353_00275 0.57 +0.0
49,961 - AO353_00275 0.57 -1.2
49,961 - AO353_00275 0.57 +0.5
49,961 - AO353_00275 0.57 +1.7
49,961 - AO353_00275 0.57 -0.9
49,961 - AO353_00275 0.57 +0.7
49,961 - AO353_00275 0.57 -1.9
49,961 - AO353_00275 0.57 +1.3
49,961 - AO353_00275 0.57 -0.7
49,961 - AO353_00275 0.57 -0.4
49,961 - AO353_00275 0.57 -1.8
49,961 - AO353_00275 0.57 +1.3
50,085 - AO353_00275 0.88 -0.4
50,085 - AO353_00275 0.88 +0.7
50,085 - AO353_00275 0.88 -0.6
50,085 - AO353_00275 0.88 -0.3
50,148 - +1.3
50,205 - +0.5
50,205 - +0.0
50,205 - -0.3
50,464 + -0.3
50,464 + +1.0
50,470 + -1.9
50,470 + +0.2
50,470 + +0.1
50,501 + AO353_00285 0.11 -2.3
50,501 + AO353_00285 0.11 -0.3
50,501 + AO353_00285 0.11 -1.2
50,502 - AO353_00285 0.11 +0.5
50,502 - AO353_00285 0.11 +0.4
50,502 - AO353_00285 0.11 +0.4
50,518 + AO353_00285 0.17 +0.5
50,518 + AO353_00285 0.17 -1.9
50,519 - AO353_00285 0.17 -0.7
50,546 + AO353_00285 0.27 -0.9
50,546 + AO353_00285 0.27 -0.5
50,546 + AO353_00285 0.27 +0.7
50,547 - AO353_00285 0.28 -0.1
50,547 - AO353_00285 0.28 +0.4
50,547 - AO353_00285 0.28 +0.2
50,547 - AO353_00285 0.28 +0.7
50,601 + AO353_00285 0.47 -1.9
50,602 - AO353_00285 0.47 +0.5
50,602 - AO353_00285 0.47 -0.3
50,602 - AO353_00285 0.47 -0.1
50,602 - AO353_00285 0.47 -2.1
50,602 - AO353_00285 0.47 -2.1
50,675 + AO353_00285 0.74 -0.6
50,675 + AO353_00285 0.74 +1.2
50,675 + AO353_00285 0.74 +0.3
50,722 - -1.9
50,740 + +0.3
50,740 + -0.8
50,741 - +0.1
50,741 - -1.3
50,744 + +0.5
50,744 + -0.9
50,744 + +2.3
50,744 + -0.9
50,744 + +1.0
50,744 + -0.1
50,745 - +0.7
50,745 - -0.0
50,745 - -1.3
50,776 - -0.5
50,787 + -1.6
50,838 + -0.5
50,839 - +0.1
50,839 - -0.3
50,979 + AO353_00290 0.21 -0.4
50,979 + AO353_00290 0.21 +0.9
50,979 + AO353_00290 0.21 +0.7
50,980 - AO353_00290 0.21 -0.3
51,034 - AO353_00290 0.25 -0.2
51,034 - AO353_00290 0.25 +0.4
51,034 - AO353_00290 0.25 +0.9
51,042 + AO353_00290 0.26 +0.7
51,087 + AO353_00290 0.30 -0.8
51,087 + AO353_00290 0.30 -0.3
51,087 + AO353_00290 0.30 +1.0
51,087 + AO353_00290 0.30 +1.0
51,088 - AO353_00290 0.30 +2.7
51,088 - AO353_00290 0.30 -0.9
51,088 - AO353_00290 0.30 +0.7

Or see this region's nucleotide sequence