Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004715 and ABIE53_004716 are separated by 65 nucleotides ABIE53_004716 and ABIE53_004717 are separated by 558 nucleotides
ABIE53_004715: ABIE53_004715 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 906,287 to 907,726
_004715
ABIE53_004716: ABIE53_004716 - putative MFS transporter, at 907,792 to 909,174
_004716
ABIE53_004717: ABIE53_004717 - peptide chain release factor 3, at 909,733 to 911,334
_004717
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.010 kb on - strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.173 kb on - strand, within ABIE53_004715 at 907.173 kb on - strand, within ABIE53_004715 at 907.370 kb on + strand, within ABIE53_004715 at 907.518 kb on - strand, within ABIE53_004715 at 907.523 kb on + strand, within ABIE53_004715 at 907.523 kb on + strand, within ABIE53_004715 at 907.524 kb on - strand, within ABIE53_004715 at 907.667 kb on + strand at 907.682 kb on + strand at 907.683 kb on - strand at 907.697 kb on + strand at 907.698 kb on - strand at 907.698 kb on - strand at 907.698 kb on - strand at 907.732 kb on - strand at 907.732 kb on - strand at 907.797 kb on + strand at 908.164 kb on + strand, within ABIE53_004716 at 908.165 kb on - strand, within ABIE53_004716 at 908.310 kb on - strand, within ABIE53_004716 at 908.323 kb on + strand, within ABIE53_004716 at 908.323 kb on + strand, within ABIE53_004716 at 908.354 kb on - strand, within ABIE53_004716 at 908.662 kb on + strand, within ABIE53_004716 at 908.662 kb on + strand, within ABIE53_004716 at 908.663 kb on - strand, within ABIE53_004716 at 908.663 kb on - strand, within ABIE53_004716 at 909.024 kb on + strand, within ABIE53_004716 at 909.024 kb on + strand, within ABIE53_004716 at 909.024 kb on + strand, within ABIE53_004716 at 909.179 kb on + strand at 909.394 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.521 kb on + strand at 909.521 kb on + strand at 909.522 kb on - strand at 909.557 kb on + strand at 909.558 kb on - strand at 909.563 kb on + strand at 909.563 kb on + strand at 909.563 kb on + strand at 909.563 kb on + strand at 909.614 kb on + strand at 909.614 kb on + strand at 909.614 kb on + strand at 909.615 kb on - strand at 909.775 kb on - strand at 909.775 kb on - strand at 909.955 kb on + strand, within ABIE53_004717 at 910.018 kb on + strand, within ABIE53_004717 at 910.018 kb on + strand, within ABIE53_004717 at 910.019 kb on - strand, within ABIE53_004717 at 910.019 kb on - strand, within ABIE53_004717 at 910.019 kb on - strand, within ABIE53_004717 at 910.019 kb on - strand, within ABIE53_004717
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 907,010 - ABIE53_004715 0.50 +1.4 907,154 + ABIE53_004715 0.60 -0.4 907,154 + ABIE53_004715 0.60 +2.3 907,154 + ABIE53_004715 0.60 -1.1 907,155 - ABIE53_004715 0.60 +1.9 907,155 - ABIE53_004715 0.60 -1.2 907,155 - ABIE53_004715 0.60 +1.9 907,155 - ABIE53_004715 0.60 +0.4 907,155 - ABIE53_004715 0.60 -0.4 907,155 - ABIE53_004715 0.60 +1.4 907,155 - ABIE53_004715 0.60 +2.3 907,155 - ABIE53_004715 0.60 -0.9 907,172 + ABIE53_004715 0.61 -0.5 907,172 + ABIE53_004715 0.61 -0.6 907,172 + ABIE53_004715 0.61 -0.9 907,172 + ABIE53_004715 0.61 +0.9 907,173 - ABIE53_004715 0.62 +1.9 907,173 - ABIE53_004715 0.62 -0.2 907,370 + ABIE53_004715 0.75 +1.5 907,518 - ABIE53_004715 0.85 -1.1 907,523 + ABIE53_004715 0.86 -1.9 907,523 + ABIE53_004715 0.86 +0.9 907,524 - ABIE53_004715 0.86 -1.2 907,667 + +0.5 907,682 + +1.1 907,683 - +0.4 907,697 + -0.4 907,698 - -0.1 907,698 - -0.3 907,698 - -1.2 907,732 - -1.8 907,732 - -0.9 907,797 + +0.3 908,164 + ABIE53_004716 0.27 +0.0 908,165 - ABIE53_004716 0.27 +0.6 908,310 - ABIE53_004716 0.37 -1.4 908,323 + ABIE53_004716 0.38 -0.8 908,323 + ABIE53_004716 0.38 -0.6 908,354 - ABIE53_004716 0.41 -0.5 908,662 + ABIE53_004716 0.63 -0.9 908,662 + ABIE53_004716 0.63 -0.4 908,663 - ABIE53_004716 0.63 -1.8 908,663 - ABIE53_004716 0.63 +0.0 909,024 + ABIE53_004716 0.89 -0.1 909,024 + ABIE53_004716 0.89 -0.7 909,024 + ABIE53_004716 0.89 -0.9 909,179 + -0.4 909,394 + +0.5 909,437 + +0.1 909,437 + +0.4 909,437 + +0.0 909,437 + -1.4 909,437 + -2.3 909,437 + -1.3 909,437 + -0.9 909,438 - -0.6 909,438 - -1.1 909,438 - -0.9 909,438 - -0.4 909,438 - +0.4 909,438 - -2.6 909,521 + +0.9 909,521 + +0.4 909,522 - -1.8 909,557 + -2.8 909,558 - +0.2 909,563 + +0.6 909,563 + -2.2 909,563 + -0.4 909,563 + +1.5 909,614 + -0.9 909,614 + +0.4 909,614 + -0.7 909,615 - +1.6 909,775 - -2.0 909,775 - -1.0 909,955 + ABIE53_004717 0.14 -0.4 910,018 + ABIE53_004717 0.18 -1.9 910,018 + ABIE53_004717 0.18 -0.1 910,019 - ABIE53_004717 0.18 -0.8 910,019 - ABIE53_004717 0.18 +1.9 910,019 - ABIE53_004717 0.18 -0.1 910,019 - ABIE53_004717 0.18 -0.6
Or see this region's nucleotide sequence