Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004649 and ABIE53_004650 overlap by 4 nucleotides ABIE53_004650 and ABIE53_004651 overlap by 8 nucleotides
ABIE53_004649: ABIE53_004649 - diguanylate cyclase (GGDEF)-like protein, at 835,039 to 835,977
_004649
ABIE53_004650: ABIE53_004650 - chemotaxis protein CheC, at 835,974 to 836,597
_004650
ABIE53_004651: ABIE53_004651 - CheY-like chemotaxis protein, at 836,590 to 836,958
_004651
Position (kb) 835
836
837 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 834.997 kb on + strand at 834.997 kb on + strand at 834.997 kb on + strand at 834.997 kb on + strand at 834.997 kb on + strand at 834.997 kb on + strand at 834.998 kb on - strand at 834.998 kb on - strand at 834.998 kb on - strand at 835.085 kb on + strand at 835.086 kb on - strand at 835.086 kb on - strand at 835.121 kb on + strand at 835.122 kb on - strand at 835.122 kb on - strand at 835.122 kb on - strand at 835.203 kb on + strand, within ABIE53_004649 at 835.204 kb on - strand, within ABIE53_004649 at 835.362 kb on + strand, within ABIE53_004649 at 835.363 kb on - strand, within ABIE53_004649 at 835.445 kb on + strand, within ABIE53_004649 at 835.463 kb on + strand, within ABIE53_004649 at 835.463 kb on + strand, within ABIE53_004649 at 835.464 kb on - strand, within ABIE53_004649 at 835.464 kb on - strand, within ABIE53_004649 at 835.464 kb on - strand, within ABIE53_004649 at 835.464 kb on - strand, within ABIE53_004649 at 835.490 kb on + strand, within ABIE53_004649 at 835.490 kb on + strand, within ABIE53_004649 at 835.490 kb on + strand, within ABIE53_004649 at 835.491 kb on - strand, within ABIE53_004649 at 835.491 kb on - strand, within ABIE53_004649 at 835.491 kb on - strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.532 kb on + strand, within ABIE53_004649 at 835.533 kb on - strand, within ABIE53_004649 at 835.533 kb on - strand, within ABIE53_004649 at 835.533 kb on - strand, within ABIE53_004649 at 835.533 kb on - strand, within ABIE53_004649 at 835.533 kb on - strand, within ABIE53_004649 at 835.533 kb on - strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.670 kb on + strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.671 kb on - strand, within ABIE53_004649 at 835.718 kb on + strand, within ABIE53_004649 at 835.719 kb on - strand, within ABIE53_004649 at 835.719 kb on - strand, within ABIE53_004649 at 835.719 kb on - strand, within ABIE53_004649 at 835.719 kb on - strand, within ABIE53_004649 at 835.719 kb on - strand, within ABIE53_004649 at 835.719 kb on - strand, within ABIE53_004649 at 835.719 kb on - strand, within ABIE53_004649 at 835.719 kb on - strand, within ABIE53_004649 at 835.977 kb on + strand at 835.977 kb on + strand at 835.977 kb on + strand at 835.977 kb on + strand at 835.977 kb on + strand at 835.977 kb on + strand at 835.977 kb on + strand at 835.977 kb on + strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 835.978 kb on - strand at 836.282 kb on - strand, within ABIE53_004650 at 836.297 kb on - strand, within ABIE53_004650 at 836.297 kb on - strand, within ABIE53_004650 at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.598 kb on - strand at 836.606 kb on + strand at 836.607 kb on - strand at 836.607 kb on - strand at 836.607 kb on - strand at 836.626 kb on + strand at 836.707 kb on - strand, within ABIE53_004651 at 836.707 kb on - strand, within ABIE53_004651 at 836.732 kb on + strand, within ABIE53_004651 at 836.733 kb on + strand, within ABIE53_004651 at 836.733 kb on + strand, within ABIE53_004651 at 836.734 kb on - strand, within ABIE53_004651 at 836.734 kb on - strand, within ABIE53_004651 at 836.734 kb on - strand, within ABIE53_004651 at 836.734 kb on - strand, within ABIE53_004651 at 836.771 kb on + strand, within ABIE53_004651 at 836.771 kb on + strand, within ABIE53_004651 at 836.831 kb on + strand, within ABIE53_004651 at 836.832 kb on - strand, within ABIE53_004651 at 836.832 kb on - strand, within ABIE53_004651 at 836.865 kb on - strand, within ABIE53_004651 at 836.865 kb on - strand, within ABIE53_004651 at 836.946 kb on + strand at 836.947 kb on - strand at 837.162 kb on + strand at 837.162 kb on + strand at 837.185 kb on - strand at 837.191 kb on + strand at 837.191 kb on + strand at 837.191 kb on + strand at 837.191 kb on + strand at 837.191 kb on + strand at 837.191 kb on + strand at 837.191 kb on + strand at 837.191 kb on + strand at 837.191 kb on + strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.192 kb on - strand at 837.193 kb on + strand at 837.193 kb on + strand at 837.193 kb on + strand at 837.193 kb on + strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.194 kb on - strand at 837.275 kb on + strand at 837.276 kb on - strand at 837.276 kb on - strand at 837.276 kb on - strand at 837.276 kb on - strand at 837.302 kb on + strand at 837.303 kb on - strand at 837.303 kb on - strand at 837.355 kb on - strand at 837.355 kb on - strand at 837.373 kb on + strand at 837.374 kb on - strand at 837.380 kb on + strand at 837.380 kb on + strand at 837.401 kb on - strand at 837.401 kb on - strand at 837.401 kb on - strand at 837.401 kb on - strand at 837.401 kb on - strand at 837.401 kb on - strand at 837.401 kb on - strand at 837.401 kb on - strand at 837.401 kb on - strand at 837.432 kb on + strand at 837.444 kb on - strand at 837.446 kb on + strand at 837.447 kb on - strand at 837.456 kb on + strand at 837.456 kb on + strand at 837.459 kb on - strand at 837.466 kb on - strand at 837.466 kb on - strand at 837.467 kb on + strand at 837.468 kb on - strand at 837.478 kb on - strand at 837.508 kb on + strand at 837.509 kb on - strand at 837.524 kb on + strand at 837.531 kb on + strand at 837.532 kb on - strand at 837.532 kb on - strand at 837.552 kb on + strand at 837.582 kb on + strand at 837.582 kb on + strand at 837.582 kb on + strand at 837.582 kb on + strand at 837.582 kb on + strand at 837.582 kb on + strand at 837.582 kb on + strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.583 kb on - strand at 837.594 kb on - strand at 837.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 834,997 + +1.0 834,997 + -1.5 834,997 + +0.1 834,997 + +0.4 834,997 + -1.6 834,997 + -1.2 834,998 - -0.5 834,998 - -0.3 834,998 - -0.3 835,085 + -0.6 835,086 - -0.9 835,086 - -2.1 835,121 + -0.3 835,122 - -3.1 835,122 - -0.8 835,122 - -0.6 835,203 + ABIE53_004649 0.17 -2.1 835,204 - ABIE53_004649 0.18 -1.7 835,362 + ABIE53_004649 0.34 -2.2 835,363 - ABIE53_004649 0.35 +0.3 835,445 + ABIE53_004649 0.43 -0.2 835,463 + ABIE53_004649 0.45 +0.4 835,463 + ABIE53_004649 0.45 -0.9 835,464 - ABIE53_004649 0.45 -1.8 835,464 - ABIE53_004649 0.45 -2.3 835,464 - ABIE53_004649 0.45 -0.3 835,464 - ABIE53_004649 0.45 +0.4 835,490 + ABIE53_004649 0.48 -1.7 835,490 + ABIE53_004649 0.48 +0.4 835,490 + ABIE53_004649 0.48 -1.6 835,491 - ABIE53_004649 0.48 -1.3 835,491 - ABIE53_004649 0.48 -4.0 835,491 - ABIE53_004649 0.48 -0.8 835,532 + ABIE53_004649 0.53 -1.3 835,532 + ABIE53_004649 0.53 -0.8 835,532 + ABIE53_004649 0.53 -2.4 835,532 + ABIE53_004649 0.53 -0.5 835,532 + ABIE53_004649 0.53 -1.1 835,532 + ABIE53_004649 0.53 -1.7 835,532 + ABIE53_004649 0.53 -0.6 835,532 + ABIE53_004649 0.53 +1.0 835,532 + ABIE53_004649 0.53 -2.4 835,533 - ABIE53_004649 0.53 -0.0 835,533 - ABIE53_004649 0.53 -3.0 835,533 - ABIE53_004649 0.53 -2.4 835,533 - ABIE53_004649 0.53 -2.3 835,533 - ABIE53_004649 0.53 -1.6 835,533 - ABIE53_004649 0.53 -1.9 835,670 + ABIE53_004649 0.67 -1.8 835,670 + ABIE53_004649 0.67 -1.0 835,670 + ABIE53_004649 0.67 -0.0 835,670 + ABIE53_004649 0.67 -0.0 835,670 + ABIE53_004649 0.67 +0.4 835,670 + ABIE53_004649 0.67 -3.7 835,670 + ABIE53_004649 0.67 +1.0 835,670 + ABIE53_004649 0.67 +1.0 835,670 + ABIE53_004649 0.67 -0.6 835,670 + ABIE53_004649 0.67 -2.2 835,670 + ABIE53_004649 0.67 -1.4 835,671 - ABIE53_004649 0.67 +0.4 835,671 - ABIE53_004649 0.67 -0.8 835,671 - ABIE53_004649 0.67 -0.3 835,671 - ABIE53_004649 0.67 -0.5 835,671 - ABIE53_004649 0.67 -1.9 835,671 - ABIE53_004649 0.67 -2.3 835,671 - ABIE53_004649 0.67 -1.9 835,671 - ABIE53_004649 0.67 -2.1 835,671 - ABIE53_004649 0.67 +0.4 835,671 - ABIE53_004649 0.67 -0.3 835,671 - ABIE53_004649 0.67 -0.7 835,671 - ABIE53_004649 0.67 -3.0 835,718 + ABIE53_004649 0.72 -0.5 835,719 - ABIE53_004649 0.72 -0.8 835,719 - ABIE53_004649 0.72 -0.6 835,719 - ABIE53_004649 0.72 -1.0 835,719 - ABIE53_004649 0.72 -1.4 835,719 - ABIE53_004649 0.72 -1.6 835,719 - ABIE53_004649 0.72 -1.9 835,719 - ABIE53_004649 0.72 -1.0 835,719 - ABIE53_004649 0.72 +0.4 835,977 + +0.5 835,977 + +2.0 835,977 + -2.8 835,977 + -1.0 835,977 + -2.1 835,977 + -0.4 835,977 + -0.8 835,977 + -2.7 835,978 - -1.3 835,978 - -0.8 835,978 - -0.0 835,978 - -2.3 835,978 - -0.8 835,978 - -0.8 835,978 - -0.7 835,978 - -0.0 835,978 - -1.3 835,978 - +1.5 835,978 - +0.4 835,978 - -0.6 836,282 - ABIE53_004650 0.49 -1.7 836,297 - ABIE53_004650 0.52 -3.8 836,297 - ABIE53_004650 0.52 -0.3 836,597 + +0.2 836,597 + -1.6 836,597 + +0.7 836,597 + -2.0 836,597 + -1.7 836,597 + -0.5 836,597 + -0.8 836,597 + -0.8 836,597 + +2.0 836,597 + -2.1 836,597 + -2.1 836,597 + -0.3 836,597 + -0.0 836,597 + -0.0 836,597 + -0.4 836,597 + -1.4 836,597 + -1.1 836,597 + -0.8 836,597 + -1.7 836,598 - -0.9 836,598 - -2.0 836,598 - -0.3 836,598 - -1.4 836,598 - -0.3 836,598 - -1.6 836,598 - -0.9 836,598 - -0.3 836,598 - -1.3 836,598 - -2.2 836,598 - -1.9 836,598 - -1.6 836,598 - -0.0 836,598 - -0.3 836,598 - -0.6 836,598 - +0.4 836,598 - -1.5 836,598 - -0.8 836,598 - -2.2 836,598 - -0.0 836,606 + -2.0 836,607 - -2.3 836,607 - -1.4 836,607 - -0.7 836,626 + -1.3 836,707 - ABIE53_004651 0.32 +0.4 836,707 - ABIE53_004651 0.32 -1.6 836,732 + ABIE53_004651 0.38 -1.3 836,733 + ABIE53_004651 0.39 -0.8 836,733 + ABIE53_004651 0.39 -1.9 836,734 - ABIE53_004651 0.39 -3.2 836,734 - ABIE53_004651 0.39 -1.0 836,734 - ABIE53_004651 0.39 +1.0 836,734 - ABIE53_004651 0.39 -1.0 836,771 + ABIE53_004651 0.49 -2.1 836,771 + ABIE53_004651 0.49 -0.3 836,831 + ABIE53_004651 0.65 +0.4 836,832 - ABIE53_004651 0.66 +0.6 836,832 - ABIE53_004651 0.66 +1.0 836,865 - ABIE53_004651 0.75 -0.6 836,865 - ABIE53_004651 0.75 +1.7 836,946 + -0.0 836,947 - -1.0 837,162 + -1.7 837,162 + -0.8 837,185 - -1.4 837,191 + -1.3 837,191 + -2.3 837,191 + -1.2 837,191 + +0.6 837,191 + -2.2 837,191 + -0.3 837,191 + -0.3 837,191 + -2.8 837,191 + -1.3 837,192 - -0.0 837,192 - -0.2 837,192 - -0.6 837,192 - +1.0 837,192 - +1.1 837,192 - +0.0 837,192 - +1.0 837,192 - -1.3 837,192 - -0.0 837,192 - -0.0 837,192 - -0.3 837,192 - +0.1 837,192 - +1.2 837,193 + -0.0 837,193 + -2.1 837,193 + -1.7 837,193 + -2.7 837,194 - +0.1 837,194 - +0.0 837,194 - -1.7 837,194 - +0.8 837,194 - +0.6 837,194 - -1.2 837,194 - -0.0 837,194 - +0.2 837,194 - -1.5 837,194 - +1.1 837,194 - -0.3 837,194 - +0.2 837,194 - +0.4 837,194 - -0.3 837,194 - -1.0 837,194 - +2.2 837,194 - +2.0 837,275 + -0.1 837,276 - +1.0 837,276 - -1.7 837,276 - +1.0 837,276 - -0.7 837,302 + +1.0 837,303 - +1.0 837,303 - +0.4 837,355 - -1.2 837,355 - -1.3 837,373 + -2.1 837,374 - +2.0 837,380 + -3.2 837,380 + +1.0 837,401 - +0.8 837,401 - -1.0 837,401 - +0.4 837,401 - -0.8 837,401 - +0.4 837,401 - -0.0 837,401 - -0.8 837,401 - +1.0 837,401 - +0.4 837,432 + -3.3 837,444 - -0.6 837,446 + +1.0 837,447 - +2.0 837,456 + +0.4 837,456 + -0.0 837,459 - +1.0 837,466 - -1.0 837,466 - -1.1 837,467 + +0.4 837,468 - -0.6 837,478 - -3.9 837,508 + -0.3 837,509 - -0.5 837,524 + +0.4 837,531 + +0.4 837,532 - -0.8 837,532 - -0.6 837,552 + +1.2 837,582 + +2.0 837,582 + -0.8 837,582 + -0.6 837,582 + -0.0 837,582 + +2.0 837,582 + +2.0 837,582 + -1.3 837,583 - -0.3 837,583 - -1.0 837,583 - +1.2 837,583 - -1.7 837,583 - -0.9 837,583 - -1.7 837,583 - +1.4 837,583 - +0.5 837,583 - -0.3 837,583 - +3.8 837,594 - -1.7 837,594 - +2.0
Or see this region's nucleotide sequence