Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.979.1 and Xcc-8004.980.1 are separated by 1 nucleotides Xcc-8004.980.1 and Xcc-8004.981.1 overlap by 37 nucleotides Xcc-8004.981.1 and Xcc-8004.982.1 are separated by 63 nucleotides
Xcc-8004.979.1: Xcc-8004.979.1 - LysR family transcriptional regulator YeiE, at 930,793 to 931,707
Xcc-8004.979.1
Xcc-8004.980.1: Xcc-8004.980.1 - hypothetical protein, at 931,709 to 931,951
Xcc-8004.980.1
Xcc-8004.981.1: Xcc-8004.981.1 - FrmR: Negative transcriptional regulator of formaldehyde detoxification operon, at 931,915 to 932,190
Xcc-8004.981.1
Xcc-8004.982.1: Xcc-8004.982.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 932,254 to 933,363
Xcc-8004.982.1
Position (kb) 931
932
933 Strain fitness (log2 ratio) -2
-1
0
1
2 at 930.926 kb on + strand, within Xcc-8004.979.1 at 930.926 kb on + strand, within Xcc-8004.979.1 at 930.927 kb on - strand, within Xcc-8004.979.1 at 930.927 kb on - strand, within Xcc-8004.979.1 at 931.108 kb on + strand, within Xcc-8004.979.1 at 931.108 kb on + strand, within Xcc-8004.979.1 at 931.109 kb on - strand, within Xcc-8004.979.1 at 931.109 kb on - strand, within Xcc-8004.979.1 at 931.140 kb on + strand, within Xcc-8004.979.1 at 931.699 kb on - strand at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.818 kb on + strand, within Xcc-8004.980.1 at 931.818 kb on + strand, within Xcc-8004.980.1 at 931.819 kb on - strand, within Xcc-8004.980.1 at 931.819 kb on - strand, within Xcc-8004.980.1 at 931.880 kb on + strand, within Xcc-8004.980.1 at 931.880 kb on + strand, within Xcc-8004.980.1 at 931.882 kb on + strand, within Xcc-8004.980.1 at 932.007 kb on - strand, within Xcc-8004.981.1 at 932.081 kb on + strand, within Xcc-8004.981.1 at 932.082 kb on - strand, within Xcc-8004.981.1 at 932.095 kb on - strand, within Xcc-8004.981.1 at 932.180 kb on - strand at 932.180 kb on - strand at 932.180 kb on - strand at 932.415 kb on + strand, within Xcc-8004.982.1 at 932.416 kb on - strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.633 kb on - strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.684 kb on - strand, within Xcc-8004.982.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 930,926 + Xcc-8004.979.1 0.15 +0.9 930,926 + Xcc-8004.979.1 0.15 -0.3 930,927 - Xcc-8004.979.1 0.15 -0.1 930,927 - Xcc-8004.979.1 0.15 -0.3 931,108 + Xcc-8004.979.1 0.34 +0.2 931,108 + Xcc-8004.979.1 0.34 -0.1 931,109 - Xcc-8004.979.1 0.35 -0.2 931,109 - Xcc-8004.979.1 0.35 -0.5 931,140 + Xcc-8004.979.1 0.38 +0.9 931,699 - +1.0 931,753 + Xcc-8004.980.1 0.18 +0.7 931,753 + Xcc-8004.980.1 0.18 -0.4 931,753 + Xcc-8004.980.1 0.18 +0.6 931,753 + Xcc-8004.980.1 0.18 -0.6 931,753 + Xcc-8004.980.1 0.18 -0.1 931,753 + Xcc-8004.980.1 0.18 -0.3 931,753 + Xcc-8004.980.1 0.18 +0.1 931,753 + Xcc-8004.980.1 0.18 -1.0 931,754 - Xcc-8004.980.1 0.19 +0.4 931,754 - Xcc-8004.980.1 0.19 -0.7 931,754 - Xcc-8004.980.1 0.19 -1.4 931,754 - Xcc-8004.980.1 0.19 -0.0 931,754 - Xcc-8004.980.1 0.19 -1.9 931,818 + Xcc-8004.980.1 0.45 -0.1 931,818 + Xcc-8004.980.1 0.45 -0.3 931,819 - Xcc-8004.980.1 0.45 +0.4 931,819 - Xcc-8004.980.1 0.45 +1.6 931,880 + Xcc-8004.980.1 0.70 +1.0 931,880 + Xcc-8004.980.1 0.70 -1.4 931,882 + Xcc-8004.980.1 0.71 +0.3 932,007 - Xcc-8004.981.1 0.33 +2.3 932,081 + Xcc-8004.981.1 0.60 -0.4 932,082 - Xcc-8004.981.1 0.61 +2.0 932,095 - Xcc-8004.981.1 0.65 +0.3 932,180 - +0.8 932,180 - +0.3 932,180 - +0.3 932,415 + Xcc-8004.982.1 0.15 -0.4 932,416 - Xcc-8004.982.1 0.15 +1.1 932,515 + Xcc-8004.982.1 0.24 -1.3 932,515 + Xcc-8004.982.1 0.24 -0.3 932,515 + Xcc-8004.982.1 0.24 -0.3 932,515 + Xcc-8004.982.1 0.24 -0.7 932,516 - Xcc-8004.982.1 0.24 +0.4 932,516 - Xcc-8004.982.1 0.24 +0.7 932,516 - Xcc-8004.982.1 0.24 -0.6 932,633 - Xcc-8004.982.1 0.34 +0.1 932,656 + Xcc-8004.982.1 0.36 -2.2 932,656 + Xcc-8004.982.1 0.36 +0.4 932,656 + Xcc-8004.982.1 0.36 -1.0 932,656 + Xcc-8004.982.1 0.36 -0.6 932,656 + Xcc-8004.982.1 0.36 +1.1 932,656 + Xcc-8004.982.1 0.36 -1.5 932,656 + Xcc-8004.982.1 0.36 -0.0 932,656 + Xcc-8004.982.1 0.36 +1.6 932,657 - Xcc-8004.982.1 0.36 -0.3 932,657 - Xcc-8004.982.1 0.36 -0.4 932,683 + Xcc-8004.982.1 0.39 +1.0 932,683 + Xcc-8004.982.1 0.39 +0.7 932,684 - Xcc-8004.982.1 0.39 +0.8
Or see this region's nucleotide sequence