Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5215.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5214.1 and Xcc-8004.5215.1 are separated by 122 nucleotidesXcc-8004.5215.1 and Xcc-8004.5216.1 overlap by 4 nucleotides Xcc-8004.5214.1: Xcc-8004.5214.1 - sal operon transcriptional repressor, at 4,948,379 to 4,949,494 Xcc-8004.5214.1 Xcc-8004.5215.1: Xcc-8004.5215.1 - Alpha-glucuronidase (EC 3.2.1.139), at 4,949,617 to 4,951,836 Xcc-8004.5215.1 Xcc-8004.5216.1: Xcc-8004.5216.1 - Sialic acid-specific 9-O-acetylesterase, at 4,951,833 to 4,953,797 Xcc-8004.5216.1 Position (kb) 4949 4950 4951 4952Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4948.767 kb on + strand, within Xcc-8004.5214.1at 4948.768 kb on - strand, within Xcc-8004.5214.1at 4948.768 kb on - strand, within Xcc-8004.5214.1at 4948.880 kb on - strand, within Xcc-8004.5214.1at 4948.881 kb on + strand, within Xcc-8004.5214.1at 4948.881 kb on + strand, within Xcc-8004.5214.1at 4948.881 kb on + strand, within Xcc-8004.5214.1at 4948.881 kb on + strand, within Xcc-8004.5214.1at 4948.882 kb on - strand, within Xcc-8004.5214.1at 4948.882 kb on - strand, within Xcc-8004.5214.1at 4949.229 kb on + strand, within Xcc-8004.5214.1at 4949.230 kb on - strand, within Xcc-8004.5214.1at 4949.292 kb on + strand, within Xcc-8004.5214.1at 4949.292 kb on + strand, within Xcc-8004.5214.1at 4949.416 kb on + strandat 4949.417 kb on - strandat 4949.417 kb on - strandat 4949.625 kb on + strandat 4949.626 kb on - strandat 4949.626 kb on - strandat 4949.626 kb on - strandat 4950.088 kb on + strand, within Xcc-8004.5215.1at 4950.223 kb on + strand, within Xcc-8004.5215.1at 4950.280 kb on + strand, within Xcc-8004.5215.1at 4950.289 kb on + strand, within Xcc-8004.5215.1at 4950.373 kb on + strand, within Xcc-8004.5215.1at 4950.373 kb on + strand, within Xcc-8004.5215.1at 4950.373 kb on + strand, within Xcc-8004.5215.1at 4950.374 kb on - strand, within Xcc-8004.5215.1at 4950.538 kb on + strand, within Xcc-8004.5215.1at 4950.539 kb on - strand, within Xcc-8004.5215.1at 4950.539 kb on - strand, within Xcc-8004.5215.1at 4950.539 kb on - strand, within Xcc-8004.5215.1at 4950.539 kb on - strand, within Xcc-8004.5215.1at 4950.736 kb on + strand, within Xcc-8004.5215.1at 4950.736 kb on + strand, within Xcc-8004.5215.1at 4950.895 kb on + strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.899 kb on + strand, within Xcc-8004.5215.1at 4950.899 kb on + strand, within Xcc-8004.5215.1at 4950.899 kb on + strand, within Xcc-8004.5215.1at 4950.899 kb on + strand, within Xcc-8004.5215.1at 4950.900 kb on - strand, within Xcc-8004.5215.1at 4950.900 kb on - strand, within Xcc-8004.5215.1at 4950.922 kb on + strand, within Xcc-8004.5215.1at 4950.961 kb on - strand, within Xcc-8004.5215.1at 4950.961 kb on - strand, within Xcc-8004.5215.1at 4950.964 kb on + strand, within Xcc-8004.5215.1at 4950.964 kb on + strand, within Xcc-8004.5215.1at 4950.964 kb on + strand, within Xcc-8004.5215.1at 4950.965 kb on - strand, within Xcc-8004.5215.1at 4950.965 kb on - strand, within Xcc-8004.5215.1at 4951.117 kb on + strand, within Xcc-8004.5215.1at 4951.117 kb on + strand, within Xcc-8004.5215.1at 4951.151 kb on + strand, within Xcc-8004.5215.1at 4951.152 kb on - strand, within Xcc-8004.5215.1at 4951.264 kb on + strand, within Xcc-8004.5215.1at 4951.264 kb on + strand, within Xcc-8004.5215.1at 4951.264 kb on + strand, within Xcc-8004.5215.1at 4951.265 kb on - strand, within Xcc-8004.5215.1at 4951.265 kb on - strand, within Xcc-8004.5215.1at 4951.265 kb on - strand, within Xcc-8004.5215.1at 4951.312 kb on + strand, within Xcc-8004.5215.1at 4951.312 kb on + strand, within Xcc-8004.5215.1at 4951.366 kb on + strand, within Xcc-8004.5215.1at 4951.366 kb on + strand, within Xcc-8004.5215.1at 4951.367 kb on - strand, within Xcc-8004.5215.1at 4951.367 kb on - strand, within Xcc-8004.5215.1at 4951.367 kb on - strand, within Xcc-8004.5215.1at 4951.369 kb on + strand, within Xcc-8004.5215.1at 4951.370 kb on - strand, within Xcc-8004.5215.1at 4951.370 kb on - strand, within Xcc-8004.5215.1at 4951.439 kb on - strand, within Xcc-8004.5215.1at 4951.439 kb on - strand, within Xcc-8004.5215.1at 4951.493 kb on - strand, within Xcc-8004.5215.1at 4951.573 kb on + strand, within Xcc-8004.5215.1at 4951.574 kb on - strand, within Xcc-8004.5215.1at 4951.574 kb on - strand, within Xcc-8004.5215.1at 4951.723 kb on + strandat 4951.724 kb on - strandat 4951.789 kb on + strandat 4951.790 kb on - strandat 4951.790 kb on - strandat 4951.790 kb on - strandat 4951.790 kb on - strandat 4951.792 kb on + strandat 4951.792 kb on + strandat 4952.100 kb on + strand, within Xcc-8004.5216.1at 4952.101 kb on - strand, within Xcc-8004.5216.1at 4952.101 kb on - strand, within Xcc-8004.5216.1at 4952.376 kb on + strand, within Xcc-8004.5216.1at 4952.376 kb on + strand, within Xcc-8004.5216.1at 4952.377 kb on - strand, within Xcc-8004.5216.1at 4952.377 kb on - strand, within Xcc-8004.5216.1at 4952.377 kb on - strand, within Xcc-8004.5216.1at 4952.379 kb on + strand, within Xcc-8004.5216.1at 4952.379 kb on + strand, within Xcc-8004.5216.1at 4952.379 kb on + strand, within Xcc-8004.5216.1at 4952.380 kb on - strand, within Xcc-8004.5216.1at 4952.836 kb on - strand, within Xcc-8004.5216.1at 4952.836 kb on - strand, within Xcc-8004.5216.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
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4,948,767 + Xcc-8004.5214.1 0.35 +1.0
4,948,768 - Xcc-8004.5214.1 0.35 +0.4
4,948,768 - Xcc-8004.5214.1 0.35 -0.5
4,948,880 - Xcc-8004.5214.1 0.45 -0.8
4,948,881 + Xcc-8004.5214.1 0.45 +0.1
4,948,881 + Xcc-8004.5214.1 0.45 +0.7
4,948,881 + Xcc-8004.5214.1 0.45 -0.4
4,948,881 + Xcc-8004.5214.1 0.45 -0.0
4,948,882 - Xcc-8004.5214.1 0.45 -0.2
4,948,882 - Xcc-8004.5214.1 0.45 +0.6
4,949,229 + Xcc-8004.5214.1 0.76 +0.2
4,949,230 - Xcc-8004.5214.1 0.76 +0.1
4,949,292 + Xcc-8004.5214.1 0.82 +0.6
4,949,292 + Xcc-8004.5214.1 0.82 +1.0
4,949,416 + +0.6
4,949,417 - +0.4
4,949,417 - +1.0
4,949,625 + -0.3
4,949,626 - +2.2
4,949,626 - -1.0
4,949,626 - -1.0
4,950,088 + Xcc-8004.5215.1 0.21 -1.4
4,950,223 + Xcc-8004.5215.1 0.27 -1.2
4,950,280 + Xcc-8004.5215.1 0.30 -1.0
4,950,289 + Xcc-8004.5215.1 0.30 +0.4
4,950,373 + Xcc-8004.5215.1 0.34 -0.0
4,950,373 + Xcc-8004.5215.1 0.34 +0.2
4,950,373 + Xcc-8004.5215.1 0.34 +1.3
4,950,374 - Xcc-8004.5215.1 0.34 +0.1
4,950,538 + Xcc-8004.5215.1 0.41 +1.0
4,950,539 - Xcc-8004.5215.1 0.42 +1.0
4,950,539 - Xcc-8004.5215.1 0.42 -0.3
4,950,539 - Xcc-8004.5215.1 0.42 -1.3
4,950,539 - Xcc-8004.5215.1 0.42 -1.4
4,950,736 + Xcc-8004.5215.1 0.50 +1.1
4,950,736 + Xcc-8004.5215.1 0.50 +1.2
4,950,895 + Xcc-8004.5215.1 0.58 -0.4
4,950,896 - Xcc-8004.5215.1 0.58 +0.2
4,950,896 - Xcc-8004.5215.1 0.58 -0.1
4,950,896 - Xcc-8004.5215.1 0.58 -0.8
4,950,896 - Xcc-8004.5215.1 0.58 +0.4
4,950,896 - Xcc-8004.5215.1 0.58 -1.0
4,950,899 + Xcc-8004.5215.1 0.58 +0.4
4,950,899 + Xcc-8004.5215.1 0.58 -0.9
4,950,899 + Xcc-8004.5215.1 0.58 -1.7
4,950,899 + Xcc-8004.5215.1 0.58 -0.4
4,950,900 - Xcc-8004.5215.1 0.58 -0.5
4,950,900 - Xcc-8004.5215.1 0.58 -0.2
4,950,922 + Xcc-8004.5215.1 0.59 -1.2
4,950,961 - Xcc-8004.5215.1 0.61 -1.5
4,950,961 - Xcc-8004.5215.1 0.61 -1.2
4,950,964 + Xcc-8004.5215.1 0.61 -1.0
4,950,964 + Xcc-8004.5215.1 0.61 -1.4
4,950,964 + Xcc-8004.5215.1 0.61 -3.2
4,950,965 - Xcc-8004.5215.1 0.61 -0.5
4,950,965 - Xcc-8004.5215.1 0.61 -0.5
4,951,117 + Xcc-8004.5215.1 0.68 -0.6
4,951,117 + Xcc-8004.5215.1 0.68 -0.8
4,951,151 + Xcc-8004.5215.1 0.69 +0.2
4,951,152 - Xcc-8004.5215.1 0.69 -0.3
4,951,264 + Xcc-8004.5215.1 0.74 +1.3
4,951,264 + Xcc-8004.5215.1 0.74 -0.2
4,951,264 + Xcc-8004.5215.1 0.74 +0.2
4,951,265 - Xcc-8004.5215.1 0.74 -0.8
4,951,265 - Xcc-8004.5215.1 0.74 -0.6
4,951,265 - Xcc-8004.5215.1 0.74 +1.1
4,951,312 + Xcc-8004.5215.1 0.76 -1.4
4,951,312 + Xcc-8004.5215.1 0.76 +0.4
4,951,366 + Xcc-8004.5215.1 0.79 +0.4
4,951,366 + Xcc-8004.5215.1 0.79 -0.6
4,951,367 - Xcc-8004.5215.1 0.79 -0.5
4,951,367 - Xcc-8004.5215.1 0.79 +0.2
4,951,367 - Xcc-8004.5215.1 0.79 +0.1
4,951,369 + Xcc-8004.5215.1 0.79 +0.2
4,951,370 - Xcc-8004.5215.1 0.79 +0.2
4,951,370 - Xcc-8004.5215.1 0.79 -0.4
4,951,439 - Xcc-8004.5215.1 0.82 -1.2
4,951,439 - Xcc-8004.5215.1 0.82 -1.0
4,951,493 - Xcc-8004.5215.1 0.85 -0.5
4,951,573 + Xcc-8004.5215.1 0.88 -0.2
4,951,574 - Xcc-8004.5215.1 0.88 -0.7
4,951,574 - Xcc-8004.5215.1 0.88 -0.6
4,951,723 + -1.8
4,951,724 - -0.5
4,951,789 + -0.6
4,951,790 - -0.3
4,951,790 - +1.0
4,951,790 - -0.3
4,951,790 - +0.7
4,951,792 + +0.4
4,951,792 + -0.3
4,952,100 + Xcc-8004.5216.1 0.14 -0.4
4,952,101 - Xcc-8004.5216.1 0.14 -0.4
4,952,101 - Xcc-8004.5216.1 0.14 -1.1
4,952,376 + Xcc-8004.5216.1 0.28 -2.4
4,952,376 + Xcc-8004.5216.1 0.28 +2.4
4,952,377 - Xcc-8004.5216.1 0.28 +0.1
4,952,377 - Xcc-8004.5216.1 0.28 -0.5
4,952,377 - Xcc-8004.5216.1 0.28 -0.3
4,952,379 + Xcc-8004.5216.1 0.28 -1.0
4,952,379 + Xcc-8004.5216.1 0.28 -1.8
4,952,379 + Xcc-8004.5216.1 0.28 -1.6
4,952,380 - Xcc-8004.5216.1 0.28 +1.0
4,952,836 - Xcc-8004.5216.1 0.51 +0.1
4,952,836 - Xcc-8004.5216.1 0.51 -0.0

Or see this region's nucleotide sequence