Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4478.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4473.1 and Xcc-8004.4477.1 are separated by 29 nucleotidesXcc-8004.4477.1 and Xcc-8004.4478.1 overlap by 1 nucleotidesXcc-8004.4478.1 and Xcc-8004.4480.1 are separated by 134 nucleotides Xcc-8004.4473.1: Xcc-8004.4473.1 - FIG01212400: hypothetical protein, at 4,285,408 to 4,287,495 Xcc-8004.4473.1 Xcc-8004.4477.1: Xcc-8004.4477.1 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 4,287,525 to 4,288,166 Xcc-8004.4477.1 Xcc-8004.4478.1: Xcc-8004.4478.1 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 4,288,166 to 4,288,894 Xcc-8004.4478.1 Xcc-8004.4480.1: Xcc-8004.4480.1 - Phosphomannomutase (EC 5.4.2.8), at 4,289,029 to 4,290,375 Xcc-8004.4480.1 Position (kb) 4288 4289Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4287.199 kb on + strand, within Xcc-8004.4473.1at 4287.200 kb on - strand, within Xcc-8004.4473.1at 4287.204 kb on + strand, within Xcc-8004.4473.1at 4287.205 kb on - strand, within Xcc-8004.4473.1at 4287.205 kb on - strand, within Xcc-8004.4473.1at 4287.240 kb on + strand, within Xcc-8004.4473.1at 4287.240 kb on + strand, within Xcc-8004.4473.1at 4287.241 kb on - strand, within Xcc-8004.4473.1at 4287.287 kb on + strandat 4287.469 kb on + strandat 4287.470 kb on - strandat 4287.519 kb on - strandat 4287.519 kb on - strandat 4287.526 kb on + strandat 4287.526 kb on + strandat 4287.527 kb on - strandat 4287.527 kb on - strandat 4287.527 kb on - strandat 4287.527 kb on - strandat 4287.527 kb on - strandat 4287.540 kb on + strandat 4287.540 kb on + strandat 4287.540 kb on + strandat 4287.540 kb on + strandat 4287.570 kb on + strandat 4287.571 kb on - strandat 4287.571 kb on - strandat 4287.571 kb on - strandat 4287.922 kb on + strand, within Xcc-8004.4477.1at 4287.922 kb on + strand, within Xcc-8004.4477.1at 4287.922 kb on + strand, within Xcc-8004.4477.1at 4288.105 kb on + strandat 4288.105 kb on + strandat 4288.106 kb on - strandat 4288.106 kb on - strandat 4288.106 kb on - strandat 4288.106 kb on - strandat 4288.106 kb on - strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.227 kb on - strandat 4288.241 kb on - strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.301 kb on + strand, within Xcc-8004.4478.1at 4288.301 kb on + strand, within Xcc-8004.4478.1at 4288.302 kb on - strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.516 kb on - strand, within Xcc-8004.4478.1at 4288.516 kb on - strand, within Xcc-8004.4478.1at 4288.516 kb on - strand, within Xcc-8004.4478.1at 4288.605 kb on + strand, within Xcc-8004.4478.1at 4288.605 kb on + strand, within Xcc-8004.4478.1at 4288.605 kb on + strand, within Xcc-8004.4478.1at 4288.606 kb on - strand, within Xcc-8004.4478.1at 4288.606 kb on - strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.932 kb on - strandat 4288.932 kb on - strandat 4288.932 kb on - strandat 4288.932 kb on - strandat 4289.053 kb on + strandat 4289.053 kb on + strandat 4289.053 kb on + strandat 4289.053 kb on + strandat 4289.053 kb on + strandat 4289.054 kb on - strandat 4289.054 kb on - strandat 4289.054 kb on - strandat 4289.058 kb on + strandat 4289.266 kb on + strand, within Xcc-8004.4480.1at 4289.267 kb on - strand, within Xcc-8004.4480.1at 4289.267 kb on - strand, within Xcc-8004.4480.1at 4289.267 kb on - strand, within Xcc-8004.4480.1at 4289.335 kb on + strand, within Xcc-8004.4480.1at 4289.335 kb on + strand, within Xcc-8004.4480.1at 4289.336 kb on - strand, within Xcc-8004.4480.1at 4289.336 kb on - strand, within Xcc-8004.4480.1at 4289.336 kb on - strand, within Xcc-8004.4480.1at 4289.503 kb on + strand, within Xcc-8004.4480.1at 4289.503 kb on + strand, within Xcc-8004.4480.1at 4289.503 kb on + strand, within Xcc-8004.4480.1at 4289.503 kb on + strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.507 kb on + strand, within Xcc-8004.4480.1at 4289.507 kb on + strand, within Xcc-8004.4480.1at 4289.507 kb on + strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.794 kb on + strand, within Xcc-8004.4480.1at 4289.794 kb on + strand, within Xcc-8004.4480.1at 4289.794 kb on + strand, within Xcc-8004.4480.1at 4289.795 kb on - strand, within Xcc-8004.4480.1at 4289.795 kb on - strand, within Xcc-8004.4480.1at 4289.795 kb on - strand, within Xcc-8004.4480.1at 4289.797 kb on + strand, within Xcc-8004.4480.1at 4289.797 kb on + strand, within Xcc-8004.4480.1at 4289.797 kb on + strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
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4,287,199 + Xcc-8004.4473.1 0.86 -0.8
4,287,200 - Xcc-8004.4473.1 0.86 -0.2
4,287,204 + Xcc-8004.4473.1 0.86 +0.3
4,287,205 - Xcc-8004.4473.1 0.86 -0.2
4,287,205 - Xcc-8004.4473.1 0.86 -0.2
4,287,240 + Xcc-8004.4473.1 0.88 -1.3
4,287,240 + Xcc-8004.4473.1 0.88 +0.0
4,287,241 - Xcc-8004.4473.1 0.88 -1.2
4,287,287 + +0.3
4,287,469 + -0.5
4,287,470 - -1.5
4,287,519 - +0.0
4,287,519 - +0.9
4,287,526 + -0.5
4,287,526 + +0.3
4,287,527 - +1.2
4,287,527 - +1.7
4,287,527 - -0.8
4,287,527 - -0.2
4,287,527 - +0.6
4,287,540 + -2.0
4,287,540 + +1.2
4,287,540 + -0.8
4,287,540 + -1.7
4,287,570 + -1.3
4,287,571 - +2.3
4,287,571 - -0.2
4,287,571 - +0.3
4,287,922 + Xcc-8004.4477.1 0.62 +0.0
4,287,922 + Xcc-8004.4477.1 0.62 -0.5
4,287,922 + Xcc-8004.4477.1 0.62 +1.0
4,288,105 + +0.0
4,288,105 + -0.3
4,288,106 - +1.0
4,288,106 - -0.1
4,288,106 - -0.5
4,288,106 - -0.1
4,288,106 - +0.2
4,288,167 + -0.3
4,288,167 + -0.3
4,288,167 + +1.9
4,288,167 + -0.1
4,288,167 + +0.3
4,288,167 + -0.6
4,288,167 + -1.1
4,288,167 + +1.8
4,288,167 + -0.4
4,288,167 + +0.6
4,288,168 - +1.3
4,288,168 - +0.0
4,288,168 - +0.0
4,288,168 - +0.5
4,288,168 - +0.6
4,288,168 - -0.1
4,288,168 - -1.0
4,288,168 - +0.3
4,288,168 - +0.7
4,288,168 - +0.0
4,288,168 - +0.8
4,288,168 - +0.6
4,288,227 - +0.2
4,288,241 - Xcc-8004.4478.1 0.10 -1.4
4,288,242 + Xcc-8004.4478.1 0.10 -0.6
4,288,242 + Xcc-8004.4478.1 0.10 -0.1
4,288,242 + Xcc-8004.4478.1 0.10 -0.4
4,288,242 + Xcc-8004.4478.1 0.10 +1.0
4,288,242 + Xcc-8004.4478.1 0.10 -0.6
4,288,242 + Xcc-8004.4478.1 0.10 -0.8
4,288,242 + Xcc-8004.4478.1 0.10 -0.3
4,288,242 + Xcc-8004.4478.1 0.10 +0.1
4,288,242 + Xcc-8004.4478.1 0.10 -1.4
4,288,242 + Xcc-8004.4478.1 0.10 +0.5
4,288,243 - Xcc-8004.4478.1 0.11 +1.2
4,288,243 - Xcc-8004.4478.1 0.11 +1.0
4,288,243 - Xcc-8004.4478.1 0.11 +1.4
4,288,243 - Xcc-8004.4478.1 0.11 -1.2
4,288,243 - Xcc-8004.4478.1 0.11 -0.4
4,288,243 - Xcc-8004.4478.1 0.11 -0.3
4,288,243 - Xcc-8004.4478.1 0.11 -0.9
4,288,243 - Xcc-8004.4478.1 0.11 +0.8
4,288,301 + Xcc-8004.4478.1 0.19 +0.5
4,288,301 + Xcc-8004.4478.1 0.19 +0.5
4,288,302 - Xcc-8004.4478.1 0.19 +0.0
4,288,446 + Xcc-8004.4478.1 0.38 +1.0
4,288,446 + Xcc-8004.4478.1 0.38 +0.5
4,288,446 + Xcc-8004.4478.1 0.38 -0.4
4,288,446 + Xcc-8004.4478.1 0.38 +0.1
4,288,446 + Xcc-8004.4478.1 0.38 -0.1
4,288,446 + Xcc-8004.4478.1 0.38 +0.4
4,288,447 - Xcc-8004.4478.1 0.39 +0.5
4,288,447 - Xcc-8004.4478.1 0.39 -0.6
4,288,447 - Xcc-8004.4478.1 0.39 -1.3
4,288,447 - Xcc-8004.4478.1 0.39 +0.2
4,288,447 - Xcc-8004.4478.1 0.39 +0.8
4,288,447 - Xcc-8004.4478.1 0.39 +0.9
4,288,447 - Xcc-8004.4478.1 0.39 -1.2
4,288,447 - Xcc-8004.4478.1 0.39 -0.3
4,288,516 - Xcc-8004.4478.1 0.48 +1.0
4,288,516 - Xcc-8004.4478.1 0.48 +1.4
4,288,516 - Xcc-8004.4478.1 0.48 +0.2
4,288,605 + Xcc-8004.4478.1 0.60 -0.8
4,288,605 + Xcc-8004.4478.1 0.60 -2.3
4,288,605 + Xcc-8004.4478.1 0.60 -0.4
4,288,606 - Xcc-8004.4478.1 0.60 -0.6
4,288,606 - Xcc-8004.4478.1 0.60 -0.2
4,288,638 + Xcc-8004.4478.1 0.65 +0.3
4,288,638 + Xcc-8004.4478.1 0.65 -0.7
4,288,638 + Xcc-8004.4478.1 0.65 +1.0
4,288,638 + Xcc-8004.4478.1 0.65 -1.0
4,288,638 + Xcc-8004.4478.1 0.65 -1.0
4,288,638 + Xcc-8004.4478.1 0.65 -0.1
4,288,638 + Xcc-8004.4478.1 0.65 +0.2
4,288,638 + Xcc-8004.4478.1 0.65 -0.6
4,288,638 + Xcc-8004.4478.1 0.65 +0.2
4,288,638 + Xcc-8004.4478.1 0.65 -0.1
4,288,638 + Xcc-8004.4478.1 0.65 -0.6
4,288,638 + Xcc-8004.4478.1 0.65 -0.8
4,288,639 - Xcc-8004.4478.1 0.65 +0.5
4,288,639 - Xcc-8004.4478.1 0.65 +0.1
4,288,639 - Xcc-8004.4478.1 0.65 +0.0
4,288,639 - Xcc-8004.4478.1 0.65 +0.3
4,288,639 - Xcc-8004.4478.1 0.65 -0.7
4,288,639 - Xcc-8004.4478.1 0.65 +0.1
4,288,639 - Xcc-8004.4478.1 0.65 -0.3
4,288,639 - Xcc-8004.4478.1 0.65 +0.3
4,288,639 - Xcc-8004.4478.1 0.65 -0.5
4,288,639 - Xcc-8004.4478.1 0.65 -0.4
4,288,932 - -0.5
4,288,932 - -0.3
4,288,932 - +0.4
4,288,932 - -0.6
4,289,053 + +1.0
4,289,053 + -0.8
4,289,053 + +0.0
4,289,053 + +0.2
4,289,053 + +1.5
4,289,054 - -0.3
4,289,054 - -0.3
4,289,054 - +0.3
4,289,058 + +0.7
4,289,266 + Xcc-8004.4480.1 0.18 -1.7
4,289,267 - Xcc-8004.4480.1 0.18 +3.8
4,289,267 - Xcc-8004.4480.1 0.18 -0.8
4,289,267 - Xcc-8004.4480.1 0.18 +0.3
4,289,335 + Xcc-8004.4480.1 0.23 +0.9
4,289,335 + Xcc-8004.4480.1 0.23 -0.1
4,289,336 - Xcc-8004.4480.1 0.23 +0.0
4,289,336 - Xcc-8004.4480.1 0.23 +1.6
4,289,336 - Xcc-8004.4480.1 0.23 +0.4
4,289,503 + Xcc-8004.4480.1 0.35 -1.3
4,289,503 + Xcc-8004.4480.1 0.35 +0.4
4,289,503 + Xcc-8004.4480.1 0.35 +0.0
4,289,503 + Xcc-8004.4480.1 0.35 +0.4
4,289,504 - Xcc-8004.4480.1 0.35 +0.0
4,289,504 - Xcc-8004.4480.1 0.35 -0.2
4,289,504 - Xcc-8004.4480.1 0.35 -2.0
4,289,504 - Xcc-8004.4480.1 0.35 +0.5
4,289,504 - Xcc-8004.4480.1 0.35 -1.5
4,289,504 - Xcc-8004.4480.1 0.35 +2.6
4,289,504 - Xcc-8004.4480.1 0.35 -1.0
4,289,504 - Xcc-8004.4480.1 0.35 -2.1
4,289,507 + Xcc-8004.4480.1 0.35 -0.6
4,289,507 + Xcc-8004.4480.1 0.35 -0.7
4,289,507 + Xcc-8004.4480.1 0.35 +0.8
4,289,508 - Xcc-8004.4480.1 0.36 +0.7
4,289,508 - Xcc-8004.4480.1 0.36 +0.1
4,289,508 - Xcc-8004.4480.1 0.36 +0.0
4,289,508 - Xcc-8004.4480.1 0.36 -0.6
4,289,508 - Xcc-8004.4480.1 0.36 +1.0
4,289,794 + Xcc-8004.4480.1 0.57 -0.6
4,289,794 + Xcc-8004.4480.1 0.57 -1.5
4,289,794 + Xcc-8004.4480.1 0.57 -0.5
4,289,795 - Xcc-8004.4480.1 0.57 -1.0
4,289,795 - Xcc-8004.4480.1 0.57 -0.9
4,289,795 - Xcc-8004.4480.1 0.57 -0.6
4,289,797 + Xcc-8004.4480.1 0.57 -2.2
4,289,797 + Xcc-8004.4480.1 0.57 +0.5
4,289,797 + Xcc-8004.4480.1 0.57 -1.2
4,289,798 - Xcc-8004.4480.1 0.57 -0.1
4,289,798 - Xcc-8004.4480.1 0.57 -2.2
4,289,798 - Xcc-8004.4480.1 0.57 +0.5
4,289,798 - Xcc-8004.4480.1 0.57 -0.8
4,289,798 - Xcc-8004.4480.1 0.57 +1.3

Or see this region's nucleotide sequence