Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3205.1 and Xcc-8004.3206.1 are separated by 279 nucleotides Xcc-8004.3206.1 and Xcc-8004.3207.1 overlap by 13 nucleotides Xcc-8004.3207.1 and Xcc-8004.3208.1 overlap by 4 nucleotides
Xcc-8004.3205.1: Xcc-8004.3205.1 - motif=eukaryotic putative RNA-binding region RNP-1 signature, at 3,118,116 to 3,118,733
Xcc-8004.3205.1
Xcc-8004.3206.1: Xcc-8004.3206.1 - Acyl-CoA dehydrogenase/oxidase domain protein, at 3,119,013 to 3,120,008
Xcc-8004.3206.1
Xcc-8004.3207.1: Xcc-8004.3207.1 - LmbE-like protein, at 3,119,996 to 3,120,757
Xcc-8004.3207.1
Xcc-8004.3208.1: Xcc-8004.3208.1 - Methyltransferase type 12, at 3,120,754 to 3,121,350
Xcc-8004.3208.1
Position (kb) 3119
3120
3121 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3118.090 kb on + strand at 3118.117 kb on + strand at 3118.117 kb on + strand at 3118.137 kb on + strand at 3118.138 kb on - strand at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.388 kb on + strand, within Xcc-8004.3205.1 at 3118.389 kb on - strand, within Xcc-8004.3205.1 at 3118.389 kb on - strand, within Xcc-8004.3205.1 at 3118.399 kb on + strand, within Xcc-8004.3205.1 at 3118.400 kb on - strand, within Xcc-8004.3205.1 at 3118.400 kb on - strand, within Xcc-8004.3205.1 at 3118.419 kb on - strand, within Xcc-8004.3205.1 at 3118.487 kb on - strand, within Xcc-8004.3205.1 at 3118.521 kb on + strand, within Xcc-8004.3205.1 at 3118.521 kb on + strand, within Xcc-8004.3205.1 at 3118.521 kb on + strand, within Xcc-8004.3205.1 at 3118.522 kb on - strand, within Xcc-8004.3205.1 at 3118.522 kb on - strand, within Xcc-8004.3205.1 at 3118.695 kb on + strand at 3118.695 kb on + strand at 3118.695 kb on + strand at 3118.696 kb on - strand at 3118.766 kb on + strand at 3118.767 kb on - strand at 3119.001 kb on + strand at 3119.002 kb on - strand at 3119.102 kb on + strand at 3119.102 kb on + strand at 3119.103 kb on - strand at 3119.103 kb on - strand at 3119.135 kb on - strand, within Xcc-8004.3206.1 at 3119.135 kb on - strand, within Xcc-8004.3206.1 at 3119.390 kb on + strand, within Xcc-8004.3206.1 at 3119.390 kb on + strand, within Xcc-8004.3206.1 at 3119.390 kb on + strand, within Xcc-8004.3206.1 at 3119.391 kb on - strand, within Xcc-8004.3206.1 at 3119.391 kb on - strand, within Xcc-8004.3206.1 at 3119.391 kb on - strand, within Xcc-8004.3206.1 at 3119.391 kb on - strand, within Xcc-8004.3206.1 at 3119.391 kb on - strand, within Xcc-8004.3206.1 at 3119.391 kb on - strand, within Xcc-8004.3206.1 at 3119.647 kb on + strand, within Xcc-8004.3206.1 at 3119.647 kb on + strand, within Xcc-8004.3206.1 at 3119.647 kb on + strand, within Xcc-8004.3206.1 at 3119.648 kb on - strand, within Xcc-8004.3206.1 at 3119.825 kb on + strand, within Xcc-8004.3206.1 at 3120.006 kb on + strand at 3120.243 kb on - strand, within Xcc-8004.3207.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 3,118,090 + -0.8 3,118,117 + +0.1 3,118,117 + +0.5 3,118,137 + -0.4 3,118,138 - +0.8 3,118,388 + Xcc-8004.3205.1 0.44 -0.1 3,118,388 + Xcc-8004.3205.1 0.44 -1.5 3,118,388 + Xcc-8004.3205.1 0.44 -0.1 3,118,388 + Xcc-8004.3205.1 0.44 +0.7 3,118,388 + Xcc-8004.3205.1 0.44 -1.3 3,118,388 + Xcc-8004.3205.1 0.44 +0.7 3,118,388 + Xcc-8004.3205.1 0.44 +0.3 3,118,388 + Xcc-8004.3205.1 0.44 -0.4 3,118,388 + Xcc-8004.3205.1 0.44 -0.3 3,118,389 - Xcc-8004.3205.1 0.44 -0.3 3,118,389 - Xcc-8004.3205.1 0.44 +2.3 3,118,399 + Xcc-8004.3205.1 0.46 -0.2 3,118,400 - Xcc-8004.3205.1 0.46 -2.5 3,118,400 - Xcc-8004.3205.1 0.46 +1.3 3,118,419 - Xcc-8004.3205.1 0.49 +1.7 3,118,487 - Xcc-8004.3205.1 0.60 +0.0 3,118,521 + Xcc-8004.3205.1 0.66 -0.3 3,118,521 + Xcc-8004.3205.1 0.66 -0.2 3,118,521 + Xcc-8004.3205.1 0.66 -0.2 3,118,522 - Xcc-8004.3205.1 0.66 -0.3 3,118,522 - Xcc-8004.3205.1 0.66 -2.1 3,118,695 + -1.0 3,118,695 + -2.0 3,118,695 + -0.2 3,118,696 - -0.5 3,118,766 + -2.0 3,118,767 - -0.8 3,119,001 + -1.5 3,119,002 - +0.6 3,119,102 + -1.0 3,119,102 + +1.0 3,119,103 - -0.3 3,119,103 - -0.3 3,119,135 - Xcc-8004.3206.1 0.12 +1.0 3,119,135 - Xcc-8004.3206.1 0.12 +1.2 3,119,390 + Xcc-8004.3206.1 0.38 -0.4 3,119,390 + Xcc-8004.3206.1 0.38 +1.0 3,119,390 + Xcc-8004.3206.1 0.38 +0.2 3,119,391 - Xcc-8004.3206.1 0.38 +0.0 3,119,391 - Xcc-8004.3206.1 0.38 +0.2 3,119,391 - Xcc-8004.3206.1 0.38 +0.6 3,119,391 - Xcc-8004.3206.1 0.38 -2.3 3,119,391 - Xcc-8004.3206.1 0.38 +0.2 3,119,391 - Xcc-8004.3206.1 0.38 +0.6 3,119,647 + Xcc-8004.3206.1 0.64 -0.5 3,119,647 + Xcc-8004.3206.1 0.64 +2.6 3,119,647 + Xcc-8004.3206.1 0.64 -0.1 3,119,648 - Xcc-8004.3206.1 0.64 +1.0 3,119,825 + Xcc-8004.3206.1 0.82 +0.6 3,120,006 + +1.0 3,120,243 - Xcc-8004.3207.1 0.32 -0.6
Or see this region's nucleotide sequence