Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.268.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.265.1 and Xcc-8004.266.1 are separated by 104 nucleotidesXcc-8004.266.1 and Xcc-8004.268.1 are separated by 29 nucleotidesXcc-8004.268.1 and Xcc-8004.269.1 are separated by 88 nucleotidesXcc-8004.269.1 and Xcc-8004.270.1 are separated by 109 nucleotides Xcc-8004.265.1: Xcc-8004.265.1 - Glycosyltransferase, at 258,299 to 259,108 Xcc-8004.265.1 Xcc-8004.266.1: Xcc-8004.266.1 - Histone acetyltransferase HPA2 and related acetyltransferases, at 259,213 to 259,698 Xcc-8004.266.1 Xcc-8004.268.1: Xcc-8004.268.1 - FIG01210356: hypothetical protein, at 259,728 to 260,150 Xcc-8004.268.1 Xcc-8004.269.1: Xcc-8004.269.1 - FIG136845: Rhodanese-related sulfurtransferase, at 260,239 to 260,676 Xcc-8004.269.1 Xcc-8004.270.1: Xcc-8004.270.1 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 260,786 to 261,298 Xcc-8004.270.1 Position (kb) 259 260 261Strain fitness (log2 ratio) -2 -1 0 1 2at 258.764 kb on + strand, within Xcc-8004.265.1at 258.764 kb on + strand, within Xcc-8004.265.1at 258.764 kb on + strand, within Xcc-8004.265.1at 258.764 kb on + strand, within Xcc-8004.265.1at 258.765 kb on - strand, within Xcc-8004.265.1at 258.765 kb on - strand, within Xcc-8004.265.1at 258.765 kb on - strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.871 kb on + strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.872 kb on - strand, within Xcc-8004.265.1at 258.917 kb on + strand, within Xcc-8004.265.1at 258.917 kb on + strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 258.918 kb on - strand, within Xcc-8004.265.1at 259.071 kb on + strandat 259.071 kb on + strandat 259.072 kb on - strandat 259.072 kb on - strandat 259.115 kb on + strandat 259.116 kb on - strandat 259.135 kb on - strandat 259.144 kb on + strandat 259.158 kb on + strandat 259.158 kb on + strandat 259.159 kb on - strandat 259.159 kb on - strandat 259.421 kb on + strand, within Xcc-8004.266.1at 259.421 kb on + strand, within Xcc-8004.266.1at 259.421 kb on + strand, within Xcc-8004.266.1at 259.421 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.508 kb on - strand, within Xcc-8004.266.1at 259.508 kb on - strand, within Xcc-8004.266.1at 259.522 kb on + strand, within Xcc-8004.266.1at 259.522 kb on + strand, within Xcc-8004.266.1at 259.522 kb on + strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.696 kb on + strandat 259.696 kb on + strandat 259.697 kb on - strandat 259.697 kb on - strandat 259.697 kb on - strandat 259.839 kb on + strand, within Xcc-8004.268.1at 259.839 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.942 kb on - strand, within Xcc-8004.268.1at 260.042 kb on + strand, within Xcc-8004.268.1at 260.042 kb on + strand, within Xcc-8004.268.1at 260.042 kb on + strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.148 kb on + strandat 260.148 kb on + strandat 260.148 kb on + strandat 260.149 kb on - strandat 260.149 kb on - strandat 260.191 kb on - strandat 260.191 kb on - strandat 260.191 kb on - strandat 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.723 kb on - strandat 260.781 kb on + strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.864 kb on + strand, within Xcc-8004.270.1at 260.865 kb on - strand, within Xcc-8004.270.1at 261.035 kb on + strand, within Xcc-8004.270.1at 261.035 kb on + strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
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258,764 + Xcc-8004.265.1 0.57 +0.1
258,764 + Xcc-8004.265.1 0.57 -0.5
258,764 + Xcc-8004.265.1 0.57 +0.4
258,764 + Xcc-8004.265.1 0.57 +0.0
258,765 - Xcc-8004.265.1 0.58 +0.5
258,765 - Xcc-8004.265.1 0.58 -0.9
258,765 - Xcc-8004.265.1 0.58 -0.9
258,871 + Xcc-8004.265.1 0.71 -1.1
258,871 + Xcc-8004.265.1 0.71 +0.5
258,871 + Xcc-8004.265.1 0.71 +0.6
258,871 + Xcc-8004.265.1 0.71 -0.5
258,871 + Xcc-8004.265.1 0.71 -0.1
258,871 + Xcc-8004.265.1 0.71 -0.3
258,871 + Xcc-8004.265.1 0.71 -0.0
258,871 + Xcc-8004.265.1 0.71 +0.6
258,871 + Xcc-8004.265.1 0.71 +0.5
258,871 + Xcc-8004.265.1 0.71 +0.5
258,871 + Xcc-8004.265.1 0.71 +0.6
258,871 + Xcc-8004.265.1 0.71 +0.9
258,871 + Xcc-8004.265.1 0.71 +1.2
258,871 + Xcc-8004.265.1 0.71 +0.1
258,871 + Xcc-8004.265.1 0.71 -0.1
258,871 + Xcc-8004.265.1 0.71 +0.4
258,871 + Xcc-8004.265.1 0.71 +0.1
258,871 + Xcc-8004.265.1 0.71 -0.2
258,871 + Xcc-8004.265.1 0.71 -0.1
258,871 + Xcc-8004.265.1 0.71 -0.7
258,871 + Xcc-8004.265.1 0.71 -0.1
258,871 + Xcc-8004.265.1 0.71 +0.9
258,872 - Xcc-8004.265.1 0.71 -0.2
258,872 - Xcc-8004.265.1 0.71 -1.1
258,872 - Xcc-8004.265.1 0.71 +0.1
258,872 - Xcc-8004.265.1 0.71 -0.3
258,872 - Xcc-8004.265.1 0.71 -1.4
258,872 - Xcc-8004.265.1 0.71 +1.0
258,872 - Xcc-8004.265.1 0.71 +1.1
258,872 - Xcc-8004.265.1 0.71 -1.4
258,872 - Xcc-8004.265.1 0.71 -0.1
258,872 - Xcc-8004.265.1 0.71 -0.7
258,917 + Xcc-8004.265.1 0.76 +0.2
258,917 + Xcc-8004.265.1 0.76 +1.2
258,918 - Xcc-8004.265.1 0.76 -0.9
258,918 - Xcc-8004.265.1 0.76 -0.1
258,918 - Xcc-8004.265.1 0.76 -0.7
258,918 - Xcc-8004.265.1 0.76 -2.3
258,918 - Xcc-8004.265.1 0.76 +0.0
258,918 - Xcc-8004.265.1 0.76 +0.7
258,918 - Xcc-8004.265.1 0.76 +0.5
258,918 - Xcc-8004.265.1 0.76 -0.3
258,918 - Xcc-8004.265.1 0.76 +1.2
259,071 + +0.1
259,071 + +0.1
259,072 - +0.3
259,072 - -1.6
259,115 + -0.1
259,116 - -0.5
259,135 - +0.8
259,144 + +1.0
259,158 + -1.7
259,158 + -0.4
259,159 - -0.5
259,159 - -2.5
259,421 + Xcc-8004.266.1 0.43 -0.5
259,421 + Xcc-8004.266.1 0.43 -0.5
259,421 + Xcc-8004.266.1 0.43 +1.9
259,421 + Xcc-8004.266.1 0.43 -0.3
259,483 + Xcc-8004.266.1 0.56 -0.4
259,483 + Xcc-8004.266.1 0.56 -0.2
259,483 + Xcc-8004.266.1 0.56 +2.3
259,483 + Xcc-8004.266.1 0.56 -0.5
259,483 + Xcc-8004.266.1 0.56 -0.7
259,483 + Xcc-8004.266.1 0.56 +0.3
259,483 + Xcc-8004.266.1 0.56 -0.4
259,483 + Xcc-8004.266.1 0.56 -0.0
259,483 + Xcc-8004.266.1 0.56 -1.2
259,484 - Xcc-8004.266.1 0.56 +0.6
259,484 - Xcc-8004.266.1 0.56 -0.5
259,484 - Xcc-8004.266.1 0.56 +1.1
259,484 - Xcc-8004.266.1 0.56 -1.5
259,484 - Xcc-8004.266.1 0.56 -1.7
259,484 - Xcc-8004.266.1 0.56 -1.3
259,484 - Xcc-8004.266.1 0.56 +1.5
259,484 - Xcc-8004.266.1 0.56 -0.1
259,484 - Xcc-8004.266.1 0.56 +1.1
259,484 - Xcc-8004.266.1 0.56 -0.4
259,507 + Xcc-8004.266.1 0.60 -1.1
259,507 + Xcc-8004.266.1 0.60 -0.5
259,507 + Xcc-8004.266.1 0.60 +0.5
259,507 + Xcc-8004.266.1 0.60 -0.1
259,507 + Xcc-8004.266.1 0.60 -1.8
259,507 + Xcc-8004.266.1 0.60 -0.6
259,508 - Xcc-8004.266.1 0.61 -2.5
259,508 - Xcc-8004.266.1 0.61 -1.3
259,522 + Xcc-8004.266.1 0.64 -0.3
259,522 + Xcc-8004.266.1 0.64 -0.5
259,522 + Xcc-8004.266.1 0.64 +1.6
259,523 - Xcc-8004.266.1 0.64 -0.5
259,523 - Xcc-8004.266.1 0.64 -1.1
259,523 - Xcc-8004.266.1 0.64 -0.9
259,523 - Xcc-8004.266.1 0.64 +0.4
259,523 - Xcc-8004.266.1 0.64 -0.2
259,696 + -0.2
259,696 + -0.9
259,697 - +0.3
259,697 - -0.1
259,697 - -1.7
259,839 + Xcc-8004.268.1 0.26 -0.2
259,839 + Xcc-8004.268.1 0.26 -1.4
259,899 + Xcc-8004.268.1 0.40 +0.4
259,899 + Xcc-8004.268.1 0.40 -0.1
259,899 + Xcc-8004.268.1 0.40 -0.7
259,899 + Xcc-8004.268.1 0.40 -0.8
259,899 + Xcc-8004.268.1 0.40 -0.9
259,899 + Xcc-8004.268.1 0.40 +0.9
259,899 + Xcc-8004.268.1 0.40 +1.0
259,899 + Xcc-8004.268.1 0.40 +1.2
259,899 + Xcc-8004.268.1 0.40 -0.4
259,899 + Xcc-8004.268.1 0.40 -0.1
259,900 - Xcc-8004.268.1 0.41 -0.8
259,900 - Xcc-8004.268.1 0.41 +1.1
259,900 - Xcc-8004.268.1 0.41 -1.4
259,900 - Xcc-8004.268.1 0.41 +0.8
259,900 - Xcc-8004.268.1 0.41 -0.7
259,900 - Xcc-8004.268.1 0.41 +0.4
259,900 - Xcc-8004.268.1 0.41 -1.9
259,900 - Xcc-8004.268.1 0.41 -1.0
259,900 - Xcc-8004.268.1 0.41 +0.4
259,900 - Xcc-8004.268.1 0.41 -0.7
259,900 - Xcc-8004.268.1 0.41 +0.2
259,942 - Xcc-8004.268.1 0.51 +0.7
260,042 + Xcc-8004.268.1 0.74 +1.9
260,042 + Xcc-8004.268.1 0.74 -0.4
260,042 + Xcc-8004.268.1 0.74 +0.3
260,043 - Xcc-8004.268.1 0.74 +0.7
260,043 - Xcc-8004.268.1 0.74 -0.4
260,043 - Xcc-8004.268.1 0.74 +0.7
260,043 - Xcc-8004.268.1 0.74 +1.1
260,043 - Xcc-8004.268.1 0.74 +0.9
260,148 + -0.1
260,148 + +1.7
260,148 + +0.9
260,149 - +0.1
260,149 - +0.9
260,191 - -0.7
260,191 - +0.5
260,191 - -0.1
260,608 + Xcc-8004.269.1 0.84 -0.1
260,608 + Xcc-8004.269.1 0.84 -1.1
260,608 + Xcc-8004.269.1 0.84 -1.8
260,608 + Xcc-8004.269.1 0.84 +0.7
260,608 + Xcc-8004.269.1 0.84 +0.6
260,609 - Xcc-8004.269.1 0.84 -0.7
260,609 - Xcc-8004.269.1 0.84 -0.2
260,609 - Xcc-8004.269.1 0.84 -0.9
260,723 - +0.5
260,781 + -0.9
260,782 - -1.1
260,782 - -0.5
260,782 - -0.9
260,782 - -1.1
260,782 - +0.9
260,864 + Xcc-8004.270.1 0.15 -0.5
260,865 - Xcc-8004.270.1 0.15 -2.1
261,035 + Xcc-8004.270.1 0.49 -0.4
261,035 + Xcc-8004.270.1 0.49 -2.4
261,036 - Xcc-8004.270.1 0.49 -1.7
261,036 - Xcc-8004.270.1 0.49 -1.5
261,036 - Xcc-8004.270.1 0.49 -0.9
261,140 + Xcc-8004.270.1 0.69 +1.3
261,140 + Xcc-8004.270.1 0.69 -0.1
261,140 + Xcc-8004.270.1 0.69 -1.9
261,140 + Xcc-8004.270.1 0.69 +2.3
261,140 + Xcc-8004.270.1 0.69 -0.5
261,140 + Xcc-8004.270.1 0.69 -0.7
261,141 - Xcc-8004.270.1 0.69 -0.9
261,141 - Xcc-8004.270.1 0.69 +0.1
261,141 - Xcc-8004.270.1 0.69 +0.3
261,141 - Xcc-8004.270.1 0.69 -2.7

Or see this region's nucleotide sequence