Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2201.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2200.1 and Xcc-8004.2201.1 are separated by 74 nucleotidesXcc-8004.2201.1 and Xcc-8004.2202.1 overlap by 1 nucleotides Xcc-8004.2200.1: Xcc-8004.2200.1 - Transcriptional regulator, at 2,146,873 to 2,148,171 Xcc-8004.2200.1 Xcc-8004.2201.1: Xcc-8004.2201.1 - glutamine synthetase family protein, at 2,148,246 to 2,149,559 Xcc-8004.2201.1 Xcc-8004.2202.1: Xcc-8004.2202.1 - glutamine synthetase family protein, at 2,149,559 to 2,150,938 Xcc-8004.2202.1 Position (kb) 2148 2149 2150Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2147.324 kb on + strand, within Xcc-8004.2200.1at 2147.324 kb on + strand, within Xcc-8004.2200.1at 2147.325 kb on - strand, within Xcc-8004.2200.1at 2147.690 kb on + strand, within Xcc-8004.2200.1at 2147.690 kb on + strand, within Xcc-8004.2200.1at 2147.690 kb on + strand, within Xcc-8004.2200.1at 2147.690 kb on + strand, within Xcc-8004.2200.1at 2147.690 kb on + strand, within Xcc-8004.2200.1at 2147.690 kb on + strand, within Xcc-8004.2200.1at 2147.690 kb on + strand, within Xcc-8004.2200.1at 2147.691 kb on - strand, within Xcc-8004.2200.1at 2147.691 kb on - strand, within Xcc-8004.2200.1at 2147.691 kb on - strand, within Xcc-8004.2200.1at 2147.714 kb on + strand, within Xcc-8004.2200.1at 2147.714 kb on + strand, within Xcc-8004.2200.1at 2147.714 kb on + strand, within Xcc-8004.2200.1at 2147.714 kb on + strand, within Xcc-8004.2200.1at 2147.714 kb on + strand, within Xcc-8004.2200.1at 2147.714 kb on + strand, within Xcc-8004.2200.1at 2147.714 kb on + strand, within Xcc-8004.2200.1at 2147.715 kb on - strand, within Xcc-8004.2200.1at 2147.715 kb on - strand, within Xcc-8004.2200.1at 2147.715 kb on - strand, within Xcc-8004.2200.1at 2147.715 kb on - strand, within Xcc-8004.2200.1at 2147.715 kb on - strand, within Xcc-8004.2200.1at 2147.799 kb on - strand, within Xcc-8004.2200.1at 2147.799 kb on - strand, within Xcc-8004.2200.1at 2147.831 kb on + strand, within Xcc-8004.2200.1at 2147.831 kb on + strand, within Xcc-8004.2200.1at 2147.831 kb on + strand, within Xcc-8004.2200.1at 2147.832 kb on - strand, within Xcc-8004.2200.1at 2147.832 kb on - strand, within Xcc-8004.2200.1at 2147.832 kb on - strand, within Xcc-8004.2200.1at 2147.880 kb on - strand, within Xcc-8004.2200.1at 2147.880 kb on - strand, within Xcc-8004.2200.1at 2148.031 kb on + strand, within Xcc-8004.2200.1at 2148.031 kb on + strand, within Xcc-8004.2200.1at 2148.154 kb on + strandat 2148.154 kb on + strandat 2148.154 kb on + strandat 2148.154 kb on + strandat 2148.154 kb on + strandat 2148.154 kb on + strandat 2148.155 kb on - strandat 2148.155 kb on - strandat 2148.206 kb on + strandat 2148.302 kb on + strandat 2148.302 kb on + strandat 2148.420 kb on + strand, within Xcc-8004.2201.1at 2148.420 kb on + strand, within Xcc-8004.2201.1at 2148.452 kb on - strand, within Xcc-8004.2201.1at 2148.452 kb on - strand, within Xcc-8004.2201.1at 2148.555 kb on + strand, within Xcc-8004.2201.1at 2148.556 kb on - strand, within Xcc-8004.2201.1at 2148.556 kb on - strand, within Xcc-8004.2201.1at 2148.556 kb on - strand, within Xcc-8004.2201.1at 2148.614 kb on - strand, within Xcc-8004.2201.1at 2148.661 kb on + strand, within Xcc-8004.2201.1at 2148.662 kb on - strand, within Xcc-8004.2201.1at 2148.664 kb on + strand, within Xcc-8004.2201.1at 2148.664 kb on + strand, within Xcc-8004.2201.1at 2148.664 kb on + strand, within Xcc-8004.2201.1at 2148.664 kb on + strand, within Xcc-8004.2201.1at 2148.664 kb on + strand, within Xcc-8004.2201.1at 2148.665 kb on - strand, within Xcc-8004.2201.1at 2148.665 kb on - strand, within Xcc-8004.2201.1at 2148.665 kb on - strand, within Xcc-8004.2201.1at 2148.665 kb on - strand, within Xcc-8004.2201.1at 2148.757 kb on + strand, within Xcc-8004.2201.1at 2148.757 kb on + strand, within Xcc-8004.2201.1at 2148.757 kb on + strand, within Xcc-8004.2201.1at 2148.757 kb on + strand, within Xcc-8004.2201.1at 2148.758 kb on - strand, within Xcc-8004.2201.1at 2148.758 kb on - strand, within Xcc-8004.2201.1at 2148.758 kb on - strand, within Xcc-8004.2201.1at 2148.758 kb on - strand, within Xcc-8004.2201.1at 2148.916 kb on + strand, within Xcc-8004.2201.1at 2148.916 kb on + strand, within Xcc-8004.2201.1at 2148.916 kb on + strand, within Xcc-8004.2201.1at 2148.916 kb on + strand, within Xcc-8004.2201.1at 2148.916 kb on + strand, within Xcc-8004.2201.1at 2148.916 kb on + strand, within Xcc-8004.2201.1at 2148.916 kb on + strand, within Xcc-8004.2201.1at 2148.916 kb on + strand, within Xcc-8004.2201.1at 2148.917 kb on - strand, within Xcc-8004.2201.1at 2148.964 kb on + strand, within Xcc-8004.2201.1at 2148.965 kb on - strand, within Xcc-8004.2201.1at 2148.965 kb on - strand, within Xcc-8004.2201.1at 2149.015 kb on + strand, within Xcc-8004.2201.1at 2149.016 kb on - strand, within Xcc-8004.2201.1at 2149.016 kb on - strand, within Xcc-8004.2201.1at 2149.072 kb on + strand, within Xcc-8004.2201.1at 2149.073 kb on - strand, within Xcc-8004.2201.1at 2149.078 kb on + strand, within Xcc-8004.2201.1at 2149.078 kb on + strand, within Xcc-8004.2201.1at 2149.078 kb on + strand, within Xcc-8004.2201.1at 2149.079 kb on - strand, within Xcc-8004.2201.1at 2149.079 kb on - strand, within Xcc-8004.2201.1at 2149.079 kb on - strand, within Xcc-8004.2201.1at 2149.079 kb on - strand, within Xcc-8004.2201.1at 2149.079 kb on - strand, within Xcc-8004.2201.1at 2149.225 kb on + strand, within Xcc-8004.2201.1at 2149.292 kb on - strand, within Xcc-8004.2201.1at 2149.292 kb on - strand, within Xcc-8004.2201.1at 2149.411 kb on + strand, within Xcc-8004.2201.1at 2149.495 kb on + strandat 2149.495 kb on + strandat 2149.495 kb on + strandat 2149.511 kb on - strandat 2149.584 kb on + strandat 2149.584 kb on + strandat 2149.584 kb on + strandat 2149.584 kb on + strandat 2149.585 kb on - strandat 2149.585 kb on - strandat 2149.612 kb on - strandat 2149.837 kb on - strand, within Xcc-8004.2202.1at 2150.397 kb on + strand, within Xcc-8004.2202.1at 2150.397 kb on + strand, within Xcc-8004.2202.1at 2150.397 kb on + strand, within Xcc-8004.2202.1at 2150.397 kb on + strand, within Xcc-8004.2202.1at 2150.397 kb on + strand, within Xcc-8004.2202.1at 2150.397 kb on + strand, within Xcc-8004.2202.1at 2150.397 kb on + strand, within Xcc-8004.2202.1at 2150.398 kb on - strand, within Xcc-8004.2202.1at 2150.398 kb on - strand, within Xcc-8004.2202.1at 2150.398 kb on - strand, within Xcc-8004.2202.1at 2150.398 kb on - strand, within Xcc-8004.2202.1at 2150.487 kb on + strand, within Xcc-8004.2202.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
remove
2,147,324 + Xcc-8004.2200.1 0.35 -0.3
2,147,324 + Xcc-8004.2200.1 0.35 +0.4
2,147,325 - Xcc-8004.2200.1 0.35 -1.3
2,147,690 + Xcc-8004.2200.1 0.63 -0.3
2,147,690 + Xcc-8004.2200.1 0.63 +0.0
2,147,690 + Xcc-8004.2200.1 0.63 +0.2
2,147,690 + Xcc-8004.2200.1 0.63 -0.4
2,147,690 + Xcc-8004.2200.1 0.63 -0.2
2,147,690 + Xcc-8004.2200.1 0.63 -0.2
2,147,690 + Xcc-8004.2200.1 0.63 -0.1
2,147,691 - Xcc-8004.2200.1 0.63 -0.1
2,147,691 - Xcc-8004.2200.1 0.63 +0.4
2,147,691 - Xcc-8004.2200.1 0.63 +0.8
2,147,714 + Xcc-8004.2200.1 0.65 -0.6
2,147,714 + Xcc-8004.2200.1 0.65 +0.6
2,147,714 + Xcc-8004.2200.1 0.65 -2.0
2,147,714 + Xcc-8004.2200.1 0.65 +2.0
2,147,714 + Xcc-8004.2200.1 0.65 -0.4
2,147,714 + Xcc-8004.2200.1 0.65 -0.2
2,147,714 + Xcc-8004.2200.1 0.65 -0.1
2,147,715 - Xcc-8004.2200.1 0.65 +0.7
2,147,715 - Xcc-8004.2200.1 0.65 +0.2
2,147,715 - Xcc-8004.2200.1 0.65 +0.0
2,147,715 - Xcc-8004.2200.1 0.65 +0.4
2,147,715 - Xcc-8004.2200.1 0.65 +0.1
2,147,799 - Xcc-8004.2200.1 0.71 +1.0
2,147,799 - Xcc-8004.2200.1 0.71 +0.4
2,147,831 + Xcc-8004.2200.1 0.74 -1.0
2,147,831 + Xcc-8004.2200.1 0.74 +0.3
2,147,831 + Xcc-8004.2200.1 0.74 -1.2
2,147,832 - Xcc-8004.2200.1 0.74 -0.6
2,147,832 - Xcc-8004.2200.1 0.74 -0.7
2,147,832 - Xcc-8004.2200.1 0.74 +0.2
2,147,880 - Xcc-8004.2200.1 0.78 +0.2
2,147,880 - Xcc-8004.2200.1 0.78 -0.1
2,148,031 + Xcc-8004.2200.1 0.89 +0.2
2,148,031 + Xcc-8004.2200.1 0.89 +0.2
2,148,154 + -0.2
2,148,154 + +0.4
2,148,154 + +0.6
2,148,154 + +0.7
2,148,154 + -0.7
2,148,154 + +0.4
2,148,155 - -0.4
2,148,155 - +0.2
2,148,206 + +0.2
2,148,302 + -0.8
2,148,302 + +0.4
2,148,420 + Xcc-8004.2201.1 0.13 -0.1
2,148,420 + Xcc-8004.2201.1 0.13 +0.7
2,148,452 - Xcc-8004.2201.1 0.16 +0.6
2,148,452 - Xcc-8004.2201.1 0.16 -0.2
2,148,555 + Xcc-8004.2201.1 0.24 +1.0
2,148,556 - Xcc-8004.2201.1 0.24 +0.3
2,148,556 - Xcc-8004.2201.1 0.24 -0.4
2,148,556 - Xcc-8004.2201.1 0.24 -1.6
2,148,614 - Xcc-8004.2201.1 0.28 +0.4
2,148,661 + Xcc-8004.2201.1 0.32 +1.4
2,148,662 - Xcc-8004.2201.1 0.32 +2.3
2,148,664 + Xcc-8004.2201.1 0.32 +0.0
2,148,664 + Xcc-8004.2201.1 0.32 -1.4
2,148,664 + Xcc-8004.2201.1 0.32 -0.6
2,148,664 + Xcc-8004.2201.1 0.32 +0.4
2,148,664 + Xcc-8004.2201.1 0.32 +0.5
2,148,665 - Xcc-8004.2201.1 0.32 +0.2
2,148,665 - Xcc-8004.2201.1 0.32 +0.0
2,148,665 - Xcc-8004.2201.1 0.32 -0.4
2,148,665 - Xcc-8004.2201.1 0.32 +0.5
2,148,757 + Xcc-8004.2201.1 0.39 +1.0
2,148,757 + Xcc-8004.2201.1 0.39 -0.0
2,148,757 + Xcc-8004.2201.1 0.39 +0.2
2,148,757 + Xcc-8004.2201.1 0.39 +1.0
2,148,758 - Xcc-8004.2201.1 0.39 -0.6
2,148,758 - Xcc-8004.2201.1 0.39 +0.4
2,148,758 - Xcc-8004.2201.1 0.39 -0.0
2,148,758 - Xcc-8004.2201.1 0.39 +1.4
2,148,916 + Xcc-8004.2201.1 0.51 +0.6
2,148,916 + Xcc-8004.2201.1 0.51 +0.7
2,148,916 + Xcc-8004.2201.1 0.51 -1.1
2,148,916 + Xcc-8004.2201.1 0.51 -1.3
2,148,916 + Xcc-8004.2201.1 0.51 +0.4
2,148,916 + Xcc-8004.2201.1 0.51 +1.6
2,148,916 + Xcc-8004.2201.1 0.51 -1.0
2,148,916 + Xcc-8004.2201.1 0.51 -0.3
2,148,917 - Xcc-8004.2201.1 0.51 -0.1
2,148,964 + Xcc-8004.2201.1 0.55 +0.9
2,148,965 - Xcc-8004.2201.1 0.55 -0.8
2,148,965 - Xcc-8004.2201.1 0.55 +0.0
2,149,015 + Xcc-8004.2201.1 0.59 -1.8
2,149,016 - Xcc-8004.2201.1 0.59 -0.6
2,149,016 - Xcc-8004.2201.1 0.59 +0.2
2,149,072 + Xcc-8004.2201.1 0.63 +1.4
2,149,073 - Xcc-8004.2201.1 0.63 +3.4
2,149,078 + Xcc-8004.2201.1 0.63 +0.6
2,149,078 + Xcc-8004.2201.1 0.63 +0.4
2,149,078 + Xcc-8004.2201.1 0.63 -2.0
2,149,079 - Xcc-8004.2201.1 0.63 +0.5
2,149,079 - Xcc-8004.2201.1 0.63 -0.6
2,149,079 - Xcc-8004.2201.1 0.63 +0.3
2,149,079 - Xcc-8004.2201.1 0.63 +1.0
2,149,079 - Xcc-8004.2201.1 0.63 -2.0
2,149,225 + Xcc-8004.2201.1 0.75 +0.6
2,149,292 - Xcc-8004.2201.1 0.80 -0.2
2,149,292 - Xcc-8004.2201.1 0.80 -1.1
2,149,411 + Xcc-8004.2201.1 0.89 +0.3
2,149,495 + +0.6
2,149,495 + +0.2
2,149,495 + -0.3
2,149,511 - -0.6
2,149,584 + -0.1
2,149,584 + -0.5
2,149,584 + -0.6
2,149,584 + +0.8
2,149,585 - -0.4
2,149,585 - +1.0
2,149,612 - -1.3
2,149,837 - Xcc-8004.2202.1 0.20 -0.3
2,150,397 + Xcc-8004.2202.1 0.61 -0.7
2,150,397 + Xcc-8004.2202.1 0.61 -0.3
2,150,397 + Xcc-8004.2202.1 0.61 -1.0
2,150,397 + Xcc-8004.2202.1 0.61 -0.1
2,150,397 + Xcc-8004.2202.1 0.61 +0.2
2,150,397 + Xcc-8004.2202.1 0.61 +0.0
2,150,397 + Xcc-8004.2202.1 0.61 -0.3
2,150,398 - Xcc-8004.2202.1 0.61 +0.1
2,150,398 - Xcc-8004.2202.1 0.61 +0.0
2,150,398 - Xcc-8004.2202.1 0.61 -0.7
2,150,398 - Xcc-8004.2202.1 0.61 +1.8
2,150,487 + Xcc-8004.2202.1 0.67 -0.5

Or see this region's nucleotide sequence