Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.106.1 and Xcc-8004.107.1 are separated by 105 nucleotides Xcc-8004.107.1 and Xcc-8004.108.1 are separated by 15 nucleotides Xcc-8004.108.1 and Xcc-8004.109.1 are separated by 816 nucleotides
Xcc-8004.106.1: Xcc-8004.106.1 - Esterase/lipase, at 95,037 to 96,179
Xcc-8004.106.1
Xcc-8004.107.1: Xcc-8004.107.1 - AtsE, at 96,285 to 96,683
Xcc-8004.107.1
Xcc-8004.108.1: Xcc-8004.108.1 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 96,699 to 97,031
Xcc-8004.108.1
Xcc-8004.109.1: Xcc-8004.109.1 - L-Proline/Glycine betaine transporter ProP, at 97,848 to 99,338
Xcc-8004.109.1
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 95.778 kb on + strand, within Xcc-8004.106.1 at 95.827 kb on + strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.868 kb on + strand, within Xcc-8004.106.1 at 95.868 kb on + strand, within Xcc-8004.106.1 at 95.868 kb on + strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.871 kb on + strand, within Xcc-8004.106.1 at 95.871 kb on + strand, within Xcc-8004.106.1 at 95.872 kb on - strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.998 kb on - strand, within Xcc-8004.106.1 at 95.999 kb on + strand, within Xcc-8004.106.1 at 95.999 kb on + strand, within Xcc-8004.106.1 at 95.999 kb on + strand, within Xcc-8004.106.1 at 96.000 kb on - strand, within Xcc-8004.106.1 at 96.163 kb on + strand at 96.163 kb on + strand at 96.164 kb on - strand at 96.164 kb on - strand at 96.164 kb on - strand at 96.178 kb on - strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.226 kb on - strand at 96.226 kb on - strand at 96.226 kb on - strand at 96.226 kb on - strand at 96.247 kb on + strand at 96.248 kb on - strand at 96.248 kb on - strand at 96.248 kb on - strand at 96.248 kb on - strand at 96.248 kb on - strand at 96.356 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.535 kb on - strand, within Xcc-8004.107.1 at 96.535 kb on - strand, within Xcc-8004.107.1 at 96.535 kb on - strand, within Xcc-8004.107.1 at 96.535 kb on - strand, within Xcc-8004.107.1 at 96.547 kb on + strand, within Xcc-8004.107.1 at 96.616 kb on + strand, within Xcc-8004.107.1 at 96.616 kb on + strand, within Xcc-8004.107.1 at 96.681 kb on + strand at 96.717 kb on + strand at 96.740 kb on + strand, within Xcc-8004.108.1 at 96.741 kb on - strand, within Xcc-8004.108.1 at 96.846 kb on + strand, within Xcc-8004.108.1 at 97.071 kb on + strand at 97.071 kb on + strand at 97.071 kb on + strand at 97.072 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.242 kb on + strand at 97.272 kb on + strand at 97.273 kb on - strand at 97.280 kb on + strand at 97.280 kb on + strand at 97.281 kb on - strand at 97.281 kb on - strand at 97.281 kb on - strand at 97.345 kb on - strand at 97.345 kb on - strand at 97.345 kb on - strand at 97.348 kb on - strand at 97.379 kb on - strand at 97.406 kb on + strand at 97.407 kb on - strand at 97.432 kb on + strand at 97.444 kb on + strand at 97.445 kb on - strand at 97.508 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.644 kb on - strand at 97.644 kb on - strand at 97.765 kb on - strand at 97.793 kb on + strand at 97.793 kb on + strand at 97.794 kb on - strand at 97.794 kb on - strand at 97.798 kb on + strand at 97.798 kb on + strand at 97.799 kb on - strand at 97.799 kb on - strand at 97.799 kb on - strand at 97.847 kb on + strand at 97.848 kb on - strand at 98.007 kb on + strand, within Xcc-8004.109.1 at 98.007 kb on + strand, within Xcc-8004.109.1 at 98.008 kb on - strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.014 kb on - strand, within Xcc-8004.109.1 at 98.014 kb on - strand, within Xcc-8004.109.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 95,778 + Xcc-8004.106.1 0.65 +0.1 95,827 + Xcc-8004.106.1 0.69 -0.6 95,828 - Xcc-8004.106.1 0.69 -0.5 95,828 - Xcc-8004.106.1 0.69 +0.0 95,828 - Xcc-8004.106.1 0.69 +0.3 95,828 - Xcc-8004.106.1 0.69 +0.4 95,828 - Xcc-8004.106.1 0.69 +0.0 95,868 + Xcc-8004.106.1 0.73 -1.0 95,868 + Xcc-8004.106.1 0.73 -0.1 95,868 + Xcc-8004.106.1 0.73 +1.0 95,869 - Xcc-8004.106.1 0.73 +1.3 95,869 - Xcc-8004.106.1 0.73 -0.4 95,869 - Xcc-8004.106.1 0.73 -0.6 95,869 - Xcc-8004.106.1 0.73 -0.0 95,869 - Xcc-8004.106.1 0.73 +0.8 95,871 + Xcc-8004.106.1 0.73 +0.5 95,871 + Xcc-8004.106.1 0.73 -0.1 95,872 - Xcc-8004.106.1 0.73 -0.5 95,997 + Xcc-8004.106.1 0.84 +0.5 95,997 + Xcc-8004.106.1 0.84 +0.1 95,997 + Xcc-8004.106.1 0.84 +0.5 95,997 + Xcc-8004.106.1 0.84 -1.0 95,997 + Xcc-8004.106.1 0.84 -0.4 95,998 - Xcc-8004.106.1 0.84 -0.6 95,999 + Xcc-8004.106.1 0.84 +1.6 95,999 + Xcc-8004.106.1 0.84 -1.2 95,999 + Xcc-8004.106.1 0.84 +1.4 96,000 - Xcc-8004.106.1 0.84 -3.2 96,163 + -0.8 96,163 + +0.2 96,164 - -0.2 96,164 - +1.5 96,164 - +0.9 96,178 - -0.5 96,211 + -0.9 96,211 + -0.4 96,211 + -0.1 96,211 + +0.3 96,211 + +0.3 96,211 + -0.5 96,211 + +0.1 96,211 + +0.6 96,211 + -0.4 96,211 + +0.2 96,211 + -0.1 96,211 + -0.1 96,212 - +0.1 96,212 - -0.2 96,212 - +1.2 96,212 - -0.3 96,212 - +0.2 96,212 - +0.3 96,212 - +0.6 96,212 - -0.4 96,212 - -1.1 96,212 - -0.4 96,212 - -1.4 96,212 - -0.2 96,225 + -0.2 96,225 + -1.2 96,225 + -0.2 96,225 + +1.4 96,225 + +0.3 96,225 + +0.5 96,226 - -0.6 96,226 - +0.2 96,226 - +1.5 96,226 - +0.7 96,247 + -0.5 96,248 - -0.2 96,248 - +0.3 96,248 - -0.1 96,248 - -1.9 96,248 - +0.5 96,356 + Xcc-8004.107.1 0.18 +0.4 96,534 + Xcc-8004.107.1 0.62 +0.6 96,534 + Xcc-8004.107.1 0.62 +0.2 96,534 + Xcc-8004.107.1 0.62 -0.4 96,534 + Xcc-8004.107.1 0.62 -1.3 96,534 + Xcc-8004.107.1 0.62 -1.4 96,534 + Xcc-8004.107.1 0.62 +0.9 96,535 - Xcc-8004.107.1 0.63 -0.1 96,535 - Xcc-8004.107.1 0.63 +0.7 96,535 - Xcc-8004.107.1 0.63 -0.1 96,535 - Xcc-8004.107.1 0.63 -0.2 96,547 + Xcc-8004.107.1 0.66 -0.1 96,616 + Xcc-8004.107.1 0.83 -2.7 96,616 + Xcc-8004.107.1 0.83 -0.2 96,681 + -0.6 96,717 + +0.4 96,740 + Xcc-8004.108.1 0.12 -0.8 96,741 - Xcc-8004.108.1 0.13 -1.2 96,846 + Xcc-8004.108.1 0.44 -0.4 97,071 + -0.6 97,071 + -2.9 97,071 + +0.2 97,072 - -0.1 97,116 - +1.6 97,116 - +0.3 97,116 - -1.1 97,116 - -1.5 97,116 - -0.6 97,116 - -0.3 97,116 - -0.1 97,116 - +1.0 97,242 + -0.6 97,272 + -0.1 97,273 - -0.2 97,280 + +1.0 97,280 + -0.9 97,281 - -0.4 97,281 - -2.1 97,281 - -0.0 97,345 - -0.4 97,345 - -1.1 97,345 - +0.5 97,348 - -0.2 97,379 - -1.3 97,406 + -0.7 97,407 - -1.1 97,432 + -0.1 97,444 + -0.2 97,445 - +0.3 97,508 + -0.3 97,643 + -1.7 97,643 + +0.4 97,643 + -0.4 97,643 + +0.1 97,643 + -0.1 97,643 + -0.6 97,644 - -0.5 97,644 - +0.1 97,765 - +0.9 97,793 + +0.2 97,793 + -1.1 97,794 - -1.4 97,794 - +1.0 97,798 + -1.2 97,798 + +0.6 97,799 - +0.1 97,799 - +0.9 97,799 - -0.7 97,847 + +0.9 97,848 - -1.4 98,007 + Xcc-8004.109.1 0.11 -1.1 98,007 + Xcc-8004.109.1 0.11 -1.2 98,008 - Xcc-8004.109.1 0.11 -1.1 98,013 + Xcc-8004.109.1 0.11 -0.3 98,013 + Xcc-8004.109.1 0.11 -2.8 98,013 + Xcc-8004.109.1 0.11 -0.3 98,013 + Xcc-8004.109.1 0.11 -0.8 98,013 + Xcc-8004.109.1 0.11 -0.0 98,014 - Xcc-8004.109.1 0.11 -0.7 98,014 - Xcc-8004.109.1 0.11 +0.9
Or see this region's nucleotide sequence