Experiment: Phosphomycin 0.003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0493 and Synpcc7942_0494 are separated by 179 nucleotides Synpcc7942_0494 and Synpcc7942_0495 overlap by 4 nucleotides Synpcc7942_0495 and Synpcc7942_0496 are separated by 116 nucleotides Synpcc7942_0496 and Synpcc7942_0497 are separated by 4 nucleotides
Synpcc7942_0493: Synpcc7942_0493 - hypothetical protein, at 480,967 to 482,451
_0493
Synpcc7942_0494: Synpcc7942_0494 - hypothetical protein, at 482,631 to 482,984
_0494
Synpcc7942_0495: Synpcc7942_0495 - hypothetical protein, at 482,981 to 483,517
_0495
Synpcc7942_0496: Synpcc7942_0496 - hypothetical protein, at 483,634 to 484,323
_0496
Synpcc7942_0497: Synpcc7942_0497 - hypothetical protein, at 484,328 to 484,504
_0497
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.982 kb on - strand, within Synpcc7942_0493 at 481.987 kb on - strand, within Synpcc7942_0493 at 482.030 kb on - strand, within Synpcc7942_0493 at 482.071 kb on + strand, within Synpcc7942_0493 at 482.084 kb on - strand, within Synpcc7942_0493 at 482.091 kb on + strand, within Synpcc7942_0493 at 482.100 kb on - strand, within Synpcc7942_0493 at 482.156 kb on - strand, within Synpcc7942_0493 at 482.178 kb on - strand, within Synpcc7942_0493 at 482.181 kb on - strand, within Synpcc7942_0493 at 482.181 kb on - strand, within Synpcc7942_0493 at 482.189 kb on + strand, within Synpcc7942_0493 at 482.218 kb on + strand, within Synpcc7942_0493 at 482.228 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand at 482.239 kb on + strand, within Synpcc7942_0493 at 482.247 kb on - strand, within Synpcc7942_0493 at 482.252 kb on + strand, within Synpcc7942_0493 at 482.252 kb on + strand at 482.252 kb on + strand, within Synpcc7942_0493 at 482.286 kb on + strand, within Synpcc7942_0493 at 482.318 kb on - strand at 482.318 kb on - strand at 482.318 kb on - strand at 482.362 kb on + strand at 482.386 kb on + strand at 482.400 kb on - strand at 482.445 kb on + strand at 482.445 kb on + strand at 482.462 kb on - strand at 482.470 kb on + strand at 482.486 kb on + strand at 482.488 kb on - strand at 482.503 kb on - strand at 482.508 kb on - strand at 482.524 kb on + strand at 482.608 kb on - strand at 482.659 kb on + strand at 482.667 kb on - strand, within Synpcc7942_0494 at 482.667 kb on - strand, within Synpcc7942_0494 at 482.687 kb on + strand, within Synpcc7942_0494 at 482.818 kb on + strand, within Synpcc7942_0494 at 482.835 kb on + strand, within Synpcc7942_0494 at 482.835 kb on + strand, within Synpcc7942_0494 at 482.838 kb on - strand, within Synpcc7942_0494 at 482.842 kb on + strand, within Synpcc7942_0494 at 482.842 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.847 kb on + strand, within Synpcc7942_0494 at 482.853 kb on - strand, within Synpcc7942_0494 at 482.886 kb on + strand, within Synpcc7942_0494 at 482.908 kb on + strand, within Synpcc7942_0494 at 482.921 kb on - strand, within Synpcc7942_0494 at 482.928 kb on + strand, within Synpcc7942_0494 at 482.928 kb on - strand, within Synpcc7942_0494 at 482.931 kb on - strand, within Synpcc7942_0494 at 482.934 kb on + strand, within Synpcc7942_0494 at 482.934 kb on + strand, within Synpcc7942_0494 at 482.939 kb on + strand, within Synpcc7942_0494 at 482.952 kb on - strand at 482.975 kb on + strand at 482.984 kb on + strand at 482.986 kb on + strand at 482.992 kb on - strand at 482.992 kb on - strand at 483.050 kb on - strand, within Synpcc7942_0495 at 483.085 kb on + strand, within Synpcc7942_0495 at 483.102 kb on - strand, within Synpcc7942_0495 at 483.106 kb on + strand, within Synpcc7942_0495 at 483.106 kb on + strand, within Synpcc7942_0495 at 483.114 kb on - strand, within Synpcc7942_0495 at 483.114 kb on - strand at 483.119 kb on - strand at 483.133 kb on + strand, within Synpcc7942_0495 at 483.148 kb on + strand, within Synpcc7942_0495 at 483.170 kb on - strand, within Synpcc7942_0495 at 483.170 kb on - strand, within Synpcc7942_0495 at 483.325 kb on - strand, within Synpcc7942_0495 at 483.435 kb on - strand, within Synpcc7942_0495 at 483.489 kb on + strand at 483.504 kb on - strand at 483.512 kb on - strand at 483.549 kb on + strand at 483.587 kb on - strand at 483.638 kb on + strand at 483.638 kb on + strand at 483.638 kb on + strand at 483.639 kb on - strand at 483.640 kb on - strand at 483.646 kb on - strand at 483.651 kb on - strand at 483.655 kb on + strand at 483.663 kb on - strand at 483.682 kb on - strand at 483.689 kb on + strand at 483.702 kb on - strand at 483.713 kb on + strand, within Synpcc7942_0496 at 483.721 kb on - strand, within Synpcc7942_0496 at 483.721 kb on - strand, within Synpcc7942_0496 at 483.759 kb on + strand, within Synpcc7942_0496 at 483.778 kb on - strand, within Synpcc7942_0496 at 483.782 kb on + strand, within Synpcc7942_0496 at 483.782 kb on + strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.817 kb on - strand, within Synpcc7942_0496 at 483.852 kb on + strand, within Synpcc7942_0496 at 483.907 kb on + strand, within Synpcc7942_0496 at 483.980 kb on + strand, within Synpcc7942_0496 at 483.980 kb on + strand, within Synpcc7942_0496 at 483.982 kb on + strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.990 kb on + strand, within Synpcc7942_0496 at 483.998 kb on - strand, within Synpcc7942_0496 at 483.998 kb on - strand, within Synpcc7942_0496 at 484.010 kb on - strand, within Synpcc7942_0496 at 484.079 kb on + strand, within Synpcc7942_0496 at 484.111 kb on + strand, within Synpcc7942_0496 at 484.111 kb on + strand, within Synpcc7942_0496 at 484.119 kb on - strand, within Synpcc7942_0496 at 484.134 kb on - strand, within Synpcc7942_0496 at 484.183 kb on + strand at 484.196 kb on + strand, within Synpcc7942_0496 at 484.240 kb on + strand, within Synpcc7942_0496 at 484.248 kb on - strand, within Synpcc7942_0496 at 484.301 kb on + strand at 484.301 kb on + strand at 484.301 kb on + strand at 484.301 kb on + strand at 484.308 kb on + strand at 484.309 kb on - strand at 484.309 kb on - strand at 484.325 kb on + strand at 484.325 kb on + strand at 484.333 kb on - strand at 484.333 kb on - strand at 484.333 kb on - strand at 484.339 kb on - strand at 484.344 kb on + strand at 484.367 kb on - strand, within Synpcc7942_0497 at 484.367 kb on - strand, within Synpcc7942_0497 at 484.369 kb on + strand, within Synpcc7942_0497 at 484.376 kb on + strand, within Synpcc7942_0497 at 484.386 kb on + strand, within Synpcc7942_0497 at 484.389 kb on - strand, within Synpcc7942_0497 at 484.394 kb on - strand, within Synpcc7942_0497 at 484.446 kb on - strand, within Synpcc7942_0497 at 484.451 kb on - strand, within Synpcc7942_0497 at 484.474 kb on + strand, within Synpcc7942_0497 at 484.475 kb on + strand, within Synpcc7942_0497 at 484.482 kb on - strand, within Synpcc7942_0497 at 484.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003125 mg/ml remove 481,982 - Synpcc7942_0493 0.68 +1.3 481,987 - Synpcc7942_0493 0.69 -0.0 482,030 - Synpcc7942_0493 0.72 -1.9 482,071 + Synpcc7942_0493 0.74 +1.2 482,084 - Synpcc7942_0493 0.75 -0.9 482,091 + Synpcc7942_0493 0.76 -0.0 482,100 - Synpcc7942_0493 0.76 -1.0 482,156 - Synpcc7942_0493 0.80 -1.0 482,178 - Synpcc7942_0493 0.82 -0.0 482,181 - Synpcc7942_0493 0.82 +0.6 482,181 - Synpcc7942_0493 0.82 +0.6 482,189 + Synpcc7942_0493 0.82 -2.9 482,218 + Synpcc7942_0493 0.84 +1.0 482,228 + Synpcc7942_0493 0.85 -1.0 482,239 + Synpcc7942_0493 0.86 -0.4 482,239 + Synpcc7942_0493 0.86 +2.0 482,239 + -1.4 482,239 + Synpcc7942_0493 0.86 +1.6 482,247 - Synpcc7942_0493 0.86 -0.7 482,252 + Synpcc7942_0493 0.87 -1.0 482,252 + -0.6 482,252 + Synpcc7942_0493 0.87 -0.0 482,286 + Synpcc7942_0493 0.89 -2.0 482,318 - -1.4 482,318 - -2.2 482,318 - +0.8 482,362 + +0.1 482,386 + -1.0 482,400 - +0.5 482,445 + -0.1 482,445 + -1.0 482,462 - +0.5 482,470 + -1.6 482,486 + +0.4 482,488 - +1.1 482,503 - +1.1 482,508 - -0.7 482,524 + +0.6 482,608 - +1.0 482,659 + +0.4 482,667 - Synpcc7942_0494 0.10 +0.5 482,667 - Synpcc7942_0494 0.10 -0.2 482,687 + Synpcc7942_0494 0.16 +0.2 482,818 + Synpcc7942_0494 0.53 +0.4 482,835 + Synpcc7942_0494 0.58 -0.0 482,835 + Synpcc7942_0494 0.58 +0.2 482,838 - Synpcc7942_0494 0.58 +1.0 482,842 + Synpcc7942_0494 0.60 -2.0 482,842 + Synpcc7942_0494 0.60 -0.8 482,845 + Synpcc7942_0494 0.60 -1.0 482,845 + Synpcc7942_0494 0.60 +0.0 482,845 + Synpcc7942_0494 0.60 -0.2 482,847 + Synpcc7942_0494 0.61 +0.1 482,853 - Synpcc7942_0494 0.63 +1.8 482,886 + Synpcc7942_0494 0.72 -0.0 482,908 + Synpcc7942_0494 0.78 +0.3 482,921 - Synpcc7942_0494 0.82 +0.5 482,928 + Synpcc7942_0494 0.84 +0.0 482,928 - Synpcc7942_0494 0.84 -0.0 482,931 - Synpcc7942_0494 0.85 +1.0 482,934 + Synpcc7942_0494 0.86 -0.0 482,934 + Synpcc7942_0494 0.86 -0.6 482,939 + Synpcc7942_0494 0.87 +0.6 482,952 - +0.2 482,975 + +0.8 482,984 + +0.5 482,986 + -0.0 482,992 - +0.7 482,992 - +1.0 483,050 - Synpcc7942_0495 0.13 +2.0 483,085 + Synpcc7942_0495 0.19 +0.2 483,102 - Synpcc7942_0495 0.23 +2.3 483,106 + Synpcc7942_0495 0.23 +0.4 483,106 + Synpcc7942_0495 0.23 +0.6 483,114 - Synpcc7942_0495 0.25 +1.7 483,114 - -0.0 483,119 - -1.6 483,133 + Synpcc7942_0495 0.28 +0.9 483,148 + Synpcc7942_0495 0.31 -0.4 483,170 - Synpcc7942_0495 0.35 -1.0 483,170 - Synpcc7942_0495 0.35 -1.6 483,325 - Synpcc7942_0495 0.64 +0.5 483,435 - Synpcc7942_0495 0.85 +2.3 483,489 + +0.6 483,504 - +0.1 483,512 - +0.6 483,549 + -0.4 483,587 - -0.3 483,638 + -0.8 483,638 + -0.9 483,638 + -1.0 483,639 - +0.2 483,640 - -0.8 483,646 - +0.4 483,651 - -1.0 483,655 + +0.4 483,663 - -0.5 483,682 - +0.1 483,689 + -0.0 483,702 - -0.4 483,713 + Synpcc7942_0496 0.11 -0.2 483,721 - Synpcc7942_0496 0.13 +1.5 483,721 - Synpcc7942_0496 0.13 -1.6 483,759 + Synpcc7942_0496 0.18 +0.0 483,778 - Synpcc7942_0496 0.21 +1.0 483,782 + Synpcc7942_0496 0.21 -1.4 483,782 + Synpcc7942_0496 0.21 -0.3 483,790 - Synpcc7942_0496 0.23 +0.7 483,790 - Synpcc7942_0496 0.23 -1.5 483,790 - Synpcc7942_0496 0.23 +2.2 483,817 - Synpcc7942_0496 0.27 -0.8 483,852 + Synpcc7942_0496 0.32 +1.8 483,907 + Synpcc7942_0496 0.40 -1.2 483,980 + Synpcc7942_0496 0.50 +0.5 483,980 + Synpcc7942_0496 0.50 +0.7 483,982 + Synpcc7942_0496 0.50 +1.2 483,988 - Synpcc7942_0496 0.51 +1.0 483,988 - Synpcc7942_0496 0.51 +2.3 483,988 - Synpcc7942_0496 0.51 -0.2 483,990 + Synpcc7942_0496 0.52 +0.2 483,998 - Synpcc7942_0496 0.53 +1.3 483,998 - Synpcc7942_0496 0.53 -0.0 484,010 - Synpcc7942_0496 0.54 +0.7 484,079 + Synpcc7942_0496 0.64 +0.5 484,111 + Synpcc7942_0496 0.69 -0.5 484,111 + Synpcc7942_0496 0.69 +0.2 484,119 - Synpcc7942_0496 0.70 -0.3 484,134 - Synpcc7942_0496 0.72 +1.3 484,183 + +2.0 484,196 + Synpcc7942_0496 0.81 -0.6 484,240 + Synpcc7942_0496 0.88 -2.4 484,248 - Synpcc7942_0496 0.89 -0.3 484,301 + -0.4 484,301 + +0.8 484,301 + -0.0 484,301 + +0.1 484,308 + +0.1 484,309 - +1.5 484,309 - +0.4 484,325 + +1.0 484,325 + -0.9 484,333 - +0.5 484,333 - -0.6 484,333 - -0.0 484,339 - -0.5 484,344 + +0.4 484,367 - Synpcc7942_0497 0.22 -0.4 484,367 - Synpcc7942_0497 0.22 +0.6 484,369 + Synpcc7942_0497 0.23 +1.5 484,376 + Synpcc7942_0497 0.27 +0.6 484,386 + Synpcc7942_0497 0.33 +2.0 484,389 - Synpcc7942_0497 0.34 +0.2 484,394 - Synpcc7942_0497 0.37 +1.5 484,446 - Synpcc7942_0497 0.67 -0.5 484,451 - Synpcc7942_0497 0.69 -0.8 484,474 + Synpcc7942_0497 0.82 +0.5 484,475 + Synpcc7942_0497 0.83 -1.4 484,482 - Synpcc7942_0497 0.87 +1.5 484,490 + +0.9
Or see this region's nucleotide sequence