Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18015

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,932,661	+		LRK54_RS18005	0.30	+1.3
3,932,661	+		LRK54_RS18005	0.30	+0.3
3,932,661	+		LRK54_RS18005	0.30	-1.7
3,932,661	+		LRK54_RS18005	0.30	-0.1
3,932,662	-		LRK54_RS18005	0.30	-2.3
3,932,662	-		LRK54_RS18005	0.30	-0.7
3,932,824	+		LRK54_RS18005	0.64	-1.6
3,932,824	+		LRK54_RS18005	0.64	+0.0
3,932,824	+		LRK54_RS18005	0.64	-3.1
3,932,824	+		LRK54_RS18005	0.64	-0.9
3,932,824	+		LRK54_RS18005	0.64	-0.6
3,932,824	+		LRK54_RS18005	0.64	-1.3
3,932,824	+		LRK54_RS18005	0.64	-0.1
3,932,824	+		LRK54_RS18005	0.64	-1.0
3,932,825	-		LRK54_RS18005	0.64	-1.0
3,932,825	-		LRK54_RS18005	0.64	-1.8
3,932,825	-		LRK54_RS18005	0.64	+0.3
3,932,825	-		LRK54_RS18005	0.64	-1.7
3,932,825	-		LRK54_RS18005	0.64	-1.2
3,932,825	-		LRK54_RS18005	0.64	-1.3
3,932,825	-		LRK54_RS18005	0.64	-2.1
3,932,825	-		LRK54_RS18005	0.64	-0.7
3,932,825	-		LRK54_RS18005	0.64	-0.4
3,932,825	-		LRK54_RS18005	0.64	-1.8
3,932,825	-		LRK54_RS18005	0.64	-1.9
3,932,825	-		LRK54_RS18005	0.64	-0.7
3,932,825	-		LRK54_RS18005	0.64	+0.3
3,932,825	-		LRK54_RS18005	0.64	+1.9
3,932,825	-		LRK54_RS18005	0.64	-0.4
3,932,832	+		LRK54_RS18005	0.65	-0.5
3,932,832	+		LRK54_RS18005	0.65	-1.7
3,932,832	+		LRK54_RS18005	0.65	-0.4
3,932,832	+		LRK54_RS18005	0.65	-1.3
3,932,832	+		LRK54_RS18005	0.65	+1.9
3,932,832	+		LRK54_RS18005	0.65	-1.2
3,932,832	+		LRK54_RS18005	0.65	-2.8
3,932,832	+		LRK54_RS18005	0.65	-1.1
3,932,833	-		LRK54_RS18005	0.66	-0.9
3,932,833	-		LRK54_RS18005	0.66	+0.6
3,932,833	-		LRK54_RS18005	0.66	-1.3
3,932,833	-		LRK54_RS18005	0.66	-1.6
3,932,833	-		LRK54_RS18005	0.66	-0.1
3,932,833	-		LRK54_RS18005	0.66	+0.3
3,932,833	-		LRK54_RS18005	0.66	-0.9
3,932,833	-		LRK54_RS18005	0.66	-1.1
3,932,833	-		LRK54_RS18005	0.66	+0.3
3,932,833	-		LRK54_RS18005	0.66	+1.9
3,932,833	-		LRK54_RS18005	0.66	-1.4
3,932,967	+				-1.8
3,932,967	+				-1.2
3,932,967	+				-1.7
3,932,967	+				-0.9
3,932,967	+				+0.6
3,932,967	+				+0.2
3,932,967	+				-1.0
3,932,967	+				-3.2
3,932,967	+				-1.8
3,932,967	+				-2.1
3,932,967	+				-0.9
3,932,967	+				-1.3
3,932,968	-				-1.8
3,932,968	-				-0.9
3,932,968	-				-0.9
3,932,968	-				-2.3
3,932,968	-				-0.4
3,932,968	-				+0.3
3,932,968	-				-0.8
3,932,968	-				-1.8
3,932,968	-				-1.3
3,932,968	-				-0.1
3,932,968	-				-0.1
3,933,249	-				-0.4
3,933,249	-				-0.1
3,933,394	+		LRK54_RS18015	0.14	-0.1
3,933,394	+		LRK54_RS18015	0.14	+0.3
3,933,394	+		LRK54_RS18015	0.14	+3.5
3,933,394	+		LRK54_RS18015	0.14	-1.4
3,933,394	+		LRK54_RS18015	0.14	-1.1
3,933,394	+		LRK54_RS18015	0.14	+0.3
3,933,394	+		LRK54_RS18015	0.14	-1.8
3,933,394	+		LRK54_RS18015	0.14	+0.8
3,933,394	+		LRK54_RS18015	0.14	+0.5
3,933,394	+		LRK54_RS18015	0.14	-0.7
3,933,394	+		LRK54_RS18015	0.14	-0.3
3,933,394	+		LRK54_RS18015	0.14	-1.0
3,933,394	+		LRK54_RS18015	0.14	+0.3
3,933,394	+		LRK54_RS18015	0.14	-0.1
3,933,394	+		LRK54_RS18015	0.14	-1.3
3,933,394	+		LRK54_RS18015	0.14	-1.1
3,933,394	+		LRK54_RS18015	0.14	+0.9
3,933,395	-		LRK54_RS18015	0.14	-0.1
3,933,395	-		LRK54_RS18015	0.14	-2.1
3,933,395	-		LRK54_RS18015	0.14	-1.4
3,933,395	-		LRK54_RS18015	0.14	-0.4
3,933,395	-		LRK54_RS18015	0.14	-2.2
3,933,395	-		LRK54_RS18015	0.14	-0.1
3,933,395	-		LRK54_RS18015	0.14	-0.6
3,933,395	-		LRK54_RS18015	0.14	+0.3
3,933,395	-		LRK54_RS18015	0.14	-2.5
3,933,395	-		LRK54_RS18015	0.14	-2.5
3,933,395	-		LRK54_RS18015	0.14	-1.8
3,933,395	-		LRK54_RS18015	0.14	-1.5
3,933,395	-		LRK54_RS18015	0.14	+0.9
3,933,395	-		LRK54_RS18015	0.14	-1.1
3,933,395	-		LRK54_RS18015	0.14	-1.4
3,933,395	-		LRK54_RS18015	0.14	-3.0
3,933,395	-		LRK54_RS18015	0.14	-0.4
3,933,395	-		LRK54_RS18015	0.14	+1.3
3,933,395	-		LRK54_RS18015	0.14	-1.1
3,933,395	-		LRK54_RS18015	0.14	+0.3
3,933,395	-		LRK54_RS18015	0.14	-1.4
3,933,395	-		LRK54_RS18015	0.14	-0.4
3,933,395	-		LRK54_RS18015	0.14	-0.4
3,933,395	-		LRK54_RS18015	0.14	-1.4
3,933,395	-		LRK54_RS18015	0.14	-0.7
3,933,553	+		LRK54_RS18015	0.31	-1.4
3,933,553	+		LRK54_RS18015	0.31	-0.3
3,933,553	+		LRK54_RS18015	0.31	-0.1
3,933,553	+		LRK54_RS18015	0.31	+0.3
3,933,553	+		LRK54_RS18015	0.31	-2.4
3,933,553	+		LRK54_RS18015	0.31	-0.1
3,933,554	-		LRK54_RS18015	0.31	-0.6
3,933,554	-		LRK54_RS18015	0.31	-1.2
3,933,554	-		LRK54_RS18015	0.31	-0.4
3,933,554	-		LRK54_RS18015	0.31	+2.5
3,933,709	+		LRK54_RS18015	0.48	+0.9
3,933,709	+		LRK54_RS18015	0.48	+1.3
3,933,709	+		LRK54_RS18015	0.48	+0.3
3,933,709	+		LRK54_RS18015	0.48	+1.9
3,933,709	+		LRK54_RS18015	0.48	-2.5
3,933,709	+		LRK54_RS18015	0.48	-0.9
3,933,709	+		LRK54_RS18015	0.48	-0.4
3,933,709	+		LRK54_RS18015	0.48	-0.8
3,933,710	-		LRK54_RS18015	0.49	-0.9
3,933,710	-		LRK54_RS18015	0.49	+0.9
3,933,710	-		LRK54_RS18015	0.49	-1.0
3,933,710	-		LRK54_RS18015	0.49	+2.9
3,933,710	-		LRK54_RS18015	0.49	-0.6
3,933,710	-		LRK54_RS18015	0.49	-0.1
3,933,710	-		LRK54_RS18015	0.49	-1.1
3,933,710	-		LRK54_RS18015	0.49	-0.1
3,933,790	+		LRK54_RS18015	0.57	+0.3
3,933,790	+		LRK54_RS18015	0.57	-1.2
3,933,790	+		LRK54_RS18015	0.57	+0.9
3,933,790	+		LRK54_RS18015	0.57	-0.9
3,933,790	+		LRK54_RS18015	0.57	+1.9
3,933,790	+		LRK54_RS18015	0.57	-0.5
3,933,790	+		LRK54_RS18015	0.57	-0.6
3,933,790	+		LRK54_RS18015	0.57	-1.5
3,933,790	+		LRK54_RS18015	0.57	-0.9
3,933,790	+		LRK54_RS18015	0.57	-0.3
3,933,790	+		LRK54_RS18015	0.57	-0.1
3,933,790	+		LRK54_RS18015	0.57	-0.1
3,933,790	+		LRK54_RS18015	0.57	+0.3
3,933,790	+		LRK54_RS18015	0.57	-0.1
3,933,790	+		LRK54_RS18015	0.57	-0.7
3,933,790	+		LRK54_RS18015	0.57	+0.1
3,933,790	+		LRK54_RS18015	0.57	-0.3
3,933,790	+		LRK54_RS18015	0.57	+0.9
3,933,790	+		LRK54_RS18015	0.57	-1.1
3,933,790	+		LRK54_RS18015	0.57	-0.4
3,933,790	+		LRK54_RS18015	0.57	-0.1
3,933,791	-		LRK54_RS18015	0.57	-0.9
3,933,791	-		LRK54_RS18015	0.57	-0.6
3,933,791	-		LRK54_RS18015	0.57	+0.3
3,933,791	-		LRK54_RS18015	0.57	-0.1
3,933,791	-		LRK54_RS18015	0.57	-1.1
3,933,791	-		LRK54_RS18015	0.57	+0.7
3,933,791	-		LRK54_RS18015	0.57	+1.9
3,933,791	-		LRK54_RS18015	0.57	+0.3
3,933,791	-		LRK54_RS18015	0.57	+0.3
3,933,791	-		LRK54_RS18015	0.57	-0.6
3,933,791	-		LRK54_RS18015	0.57	-1.9
3,933,791	-		LRK54_RS18015	0.57	+0.3
3,933,791	-		LRK54_RS18015	0.57	-1.5
3,933,791	-		LRK54_RS18015	0.57	-0.6
3,933,791	-		LRK54_RS18015	0.57	-0.7
3,933,791	-		LRK54_RS18015	0.57	-1.4
3,933,791	-		LRK54_RS18015	0.57	+0.9
3,933,791	-		LRK54_RS18015	0.57	-1.3
3,933,791	-		LRK54_RS18015	0.57	+0.3
3,933,791	-		LRK54_RS18015	0.57	-0.4
3,933,791	-		LRK54_RS18015	0.57	-1.4
3,933,884	+		LRK54_RS18015	0.68	-0.6
3,933,884	+		LRK54_RS18015	0.68	-0.6
3,933,884	+		LRK54_RS18015	0.68	+0.9
3,933,884	+		LRK54_RS18015	0.68	+0.6
3,933,884	+		LRK54_RS18015	0.68	+0.9
3,933,884	+		LRK54_RS18015	0.68	-0.4
3,933,885	-		LRK54_RS18015	0.68	-1.3
3,933,885	-		LRK54_RS18015	0.68	+0.5
3,933,885	-		LRK54_RS18015	0.68	-0.1
3,933,885	-		LRK54_RS18015	0.68	-2.2
3,933,885	-		LRK54_RS18015	0.68	-0.1
3,933,885	-		LRK54_RS18015	0.68	+0.6
3,933,885	-		LRK54_RS18015	0.68	-0.4
3,933,885	-		LRK54_RS18015	0.68	-0.1
3,933,886	+		LRK54_RS18015	0.68	-1.3
3,933,886	+		LRK54_RS18015	0.68	-0.4
3,933,886	+		LRK54_RS18015	0.68	-0.5
3,933,886	+		LRK54_RS18015	0.68	-0.7
3,933,886	+		LRK54_RS18015	0.68	-0.1
3,933,886	+		LRK54_RS18015	0.68	+0.9
3,933,886	+		LRK54_RS18015	0.68	-1.8
3,933,886	+		LRK54_RS18015	0.68	-1.1
3,933,886	+		LRK54_RS18015	0.68	-1.1
3,933,886	+		LRK54_RS18015	0.68	-0.3
3,933,886	+		LRK54_RS18015	0.68	+1.9
3,933,886	+		LRK54_RS18015	0.68	-1.7
3,933,886	+		LRK54_RS18015	0.68	-0.7
3,933,886	+		LRK54_RS18015	0.68	+0.3
3,933,886	+		LRK54_RS18015	0.68	-2.4
3,933,886	+		LRK54_RS18015	0.68	-1.1
3,933,886	+		LRK54_RS18015	0.68	-0.6
3,933,886	+		LRK54_RS18015	0.68	-1.3
3,933,886	+		LRK54_RS18015	0.68	+0.1
3,933,886	+		LRK54_RS18015	0.68	-0.9
3,933,886	+		LRK54_RS18015	0.68	-0.9
3,933,886	+		LRK54_RS18015	0.68	-0.4
3,933,887	-		LRK54_RS18015	0.68	-0.4
3,933,887	-		LRK54_RS18015	0.68	-1.5
3,933,887	-		LRK54_RS18015	0.68	-1.1
3,933,887	-		LRK54_RS18015	0.68	-1.1
3,933,887	-		LRK54_RS18015	0.68	-0.4
3,933,887	-		LRK54_RS18015	0.68	-0.1
3,933,887	-		LRK54_RS18015	0.68	+0.2
3,933,887	-		LRK54_RS18015	0.68	+0.3
3,933,887	-		LRK54_RS18015	0.68	-0.1
3,933,887	-		LRK54_RS18015	0.68	-2.4
3,933,887	-		LRK54_RS18015	0.68	+1.9
3,933,887	-		LRK54_RS18015	0.68	-0.3
3,933,887	-		LRK54_RS18015	0.68	-0.1
3,933,887	-		LRK54_RS18015	0.68	+0.1
3,933,887	-		LRK54_RS18015	0.68	+0.3
3,933,887	-		LRK54_RS18015	0.68	-1.3
3,933,887	-		LRK54_RS18015	0.68	-0.9
3,933,887	-		LRK54_RS18015	0.68	-0.1
3,933,887	-		LRK54_RS18015	0.68	-0.1
3,933,887	-		LRK54_RS18015	0.68	-2.4
3,933,887	-		LRK54_RS18015	0.68	-1.1
3,933,887	-		LRK54_RS18015	0.68	-1.7
3,933,887	-		LRK54_RS18015	0.68	+1.2
3,933,910	+		LRK54_RS18015	0.71	-0.4
3,933,911	-		LRK54_RS18015	0.71	-1.4
3,933,911	-		LRK54_RS18015	0.71	-1.6
3,933,911	-		LRK54_RS18015	0.71	+0.3
3,934,153	+				-0.8
3,934,153	+				+0.3
3,934,153	+				-1.3
3,934,153	+				-1.3
3,934,153	+				-0.6
3,934,153	+				+0.0
3,934,153	+				+1.9
3,934,153	+				-0.5
3,934,153	+				-0.4
3,934,154	-				+0.8
3,934,154	-				-1.9
3,934,154	-				-1.1
3,934,154	-				-2.2
3,934,154	-				+0.4
3,934,154	-				-1.3
3,934,154	-				-0.3
3,934,154	-				-1.5
3,934,154	-				-1.4
3,934,154	-				-0.9
3,934,178	+				-1.7
3,934,178	+				-1.1
3,934,178	+				-0.1
3,934,179	-				-0.3
3,934,179	-				+0.7
3,934,179	-				+1.0
3,934,179	-				-0.9
3,934,179	-				+0.1
3,934,179	-				+0.3
3,934,180	+				-0.1
3,934,205	+				-0.1
3,934,211	+				+1.9
3,934,211	+				-0.7
3,934,213	+				-0.7
3,934,214	-				+1.0
3,934,216	+				-0.7
3,934,216	+				-0.7
3,934,217	-				-0.1
3,934,217	-				-1.1
3,934,217	-				+1.9
3,934,217	-				-0.9
3,934,225	+				-0.9
3,934,226	-				-0.1
3,934,226	-				+0.1
3,934,226	-				-1.4
3,934,226	-				-1.3
3,934,239	+				+0.6
3,934,239	+				-1.8
3,934,239	+				-0.1
3,934,240	-				-0.4
3,934,308	-				+0.3
3,934,308	-				+0.3
3,934,308	-				-1.0
3,934,308	-				+1.5
3,934,311	+				-2.0
3,934,311	+				-0.1
3,934,311	+				-0.9
3,934,311	+				-1.3
3,934,311	+				-0.9
3,934,311	+				-0.4
3,934,311	+				+0.5
3,934,311	+				+0.9
3,934,311	+				-0.4
3,934,311	+				-1.1
3,934,312	-				-1.3
3,934,312	-				-3.1
3,934,312	-				+0.3
3,934,312	-				+1.9
3,934,312	-				-1.0
3,934,312	-				+1.1
3,934,312	-				-0.3
3,934,312	-				+0.9
3,934,312	-				-1.1
3,934,312	-				-1.3
3,934,312	-				+0.9
3,934,312	-				-0.7
3,934,421	-				-0.4
3,934,430	+				-0.7
3,934,430	+				+1.0
3,934,430	+				+0.2
3,934,430	+				+1.4
3,934,430	+				-0.3
3,934,430	+				+0.9
3,934,430	+				-1.0
3,934,430	+				+0.5
3,934,430	+				-1.8
3,934,431	-				-0.2
3,934,431	-				+0.1
3,934,431	-				-1.8
3,934,431	-				+0.5
3,934,431	-				-0.0
3,934,431	-				-3.3
3,934,431	-				+0.0
3,934,658	+		LRK54_RS18020	0.11	-1.1
3,934,658	+		LRK54_RS18020	0.11	-0.5
3,934,658	+		LRK54_RS18020	0.11	-2.0
3,934,658	+		LRK54_RS18020	0.11	-0.7
3,934,659	-		LRK54_RS18020	0.11	-0.3
3,934,659	-		LRK54_RS18020	0.11	-0.3
3,934,659	-		LRK54_RS18020	0.11	+0.6
3,934,659	-		LRK54_RS18020	0.11	+0.5
3,934,711	+		LRK54_RS18020	0.14	-0.3
3,934,711	+		LRK54_RS18020	0.14	-0.5
3,934,711	+		LRK54_RS18020	0.14	-0.7
3,934,711	+		LRK54_RS18020	0.14	-0.1
3,934,711	+		LRK54_RS18020	0.14	-1.3
3,934,711	+		LRK54_RS18020	0.14	-2.0
3,934,711	+		LRK54_RS18020	0.14	-1.1
3,934,711	+		LRK54_RS18020	0.14	-0.3
3,934,711	+		LRK54_RS18020	0.14	+0.3
3,934,711	+		LRK54_RS18020	0.14	-0.5
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3,934,711	+		LRK54_RS18020	0.14	-0.1
3,934,711	+		LRK54_RS18020	0.14	-1.8
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3,934,711	+		LRK54_RS18020	0.14	+0.1
3,934,712	-		LRK54_RS18020	0.14	-0.1
3,934,712	-		LRK54_RS18020	0.14	+0.5
3,934,712	-		LRK54_RS18020	0.14	+0.6
3,934,712	-		LRK54_RS18020	0.14	-0.5
3,934,712	-		LRK54_RS18020	0.14	-0.6
3,934,712	-		LRK54_RS18020	0.14	+1.2
3,934,712	-		LRK54_RS18020	0.14	-1.7
3,934,712	-		LRK54_RS18020	0.14	-0.9
3,934,712	-		LRK54_RS18020	0.14	+0.4
3,934,912	+		LRK54_RS18020	0.24	-0.7
3,934,912	+		LRK54_RS18020	0.24	-0.6
3,934,912	+		LRK54_RS18020	0.24	-0.7
3,934,912	+		LRK54_RS18020	0.24	-0.4
3,934,912	+		LRK54_RS18020	0.24	+1.1
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3,934,913	-		LRK54_RS18020	0.24	+0.6
3,934,913	-		LRK54_RS18020	0.24	-0.5
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3,934,913	-		LRK54_RS18020	0.24	-0.7
3,934,913	-		LRK54_RS18020	0.24	-0.8
3,934,913	-		LRK54_RS18020	0.24	+0.3
3,934,961	-		LRK54_RS18020	0.26	+0.9
3,934,961	-		LRK54_RS18020	0.26	+0.4
3,934,991	+		LRK54_RS18020	0.28	+0.6
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3,934,991	+		LRK54_RS18020	0.28	+0.3
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3,934,992	-		LRK54_RS18020	0.28	+1.5
3,934,992	-		LRK54_RS18020	0.28	-1.7
3,934,992	-		LRK54_RS18020	0.28	-2.5
3,935,072	+		LRK54_RS18020	0.32	-2.2
3,935,073	-		LRK54_RS18020	0.32	-0.4
3,935,156	+		LRK54_RS18020	0.36	-0.6
3,935,156	+		LRK54_RS18020	0.36	-0.1
3,935,156	+		LRK54_RS18020	0.36	-0.1
3,935,156	+		LRK54_RS18020	0.36	+0.1
3,935,156	+		LRK54_RS18020	0.36	-1.5
3,935,156	+		LRK54_RS18020	0.36	+0.5
3,935,156	+		LRK54_RS18020	0.36	-0.4
3,935,156	+		LRK54_RS18020	0.36	+0.6
3,935,156	+		LRK54_RS18020	0.36	-0.4
3,935,157	-		LRK54_RS18020	0.36	-0.4
3,935,157	-		LRK54_RS18020	0.36	-0.2
3,935,157	-		LRK54_RS18020	0.36	+0.6
3,935,157	-		LRK54_RS18020	0.36	+0.0