Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16670

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,658,450	+		LRK54_RS16665	0.12	+0.2
3,658,510	+		LRK54_RS16665	0.18	-2.0
3,658,510	+		LRK54_RS16665	0.18	-1.5
3,658,510	+		LRK54_RS16665	0.18	-0.8
3,658,510	+		LRK54_RS16665	0.18	-1.5
3,658,510	+		LRK54_RS16665	0.18	-0.5
3,658,510	+		LRK54_RS16665	0.18	-0.2
3,658,510	+		LRK54_RS16665	0.18	-1.0
3,658,510	+		LRK54_RS16665	0.18	-0.2
3,658,510	+		LRK54_RS16665	0.18	-0.7
3,658,510	+		LRK54_RS16665	0.18	-2.1
3,658,510	+		LRK54_RS16665	0.18	-2.8
3,658,510	+		LRK54_RS16665	0.18	+0.2
3,658,510	+		LRK54_RS16665	0.18	-1.3
3,658,510	+		LRK54_RS16665	0.18	-0.5
3,658,510	+		LRK54_RS16665	0.18	+0.2
3,658,510	+		LRK54_RS16665	0.18	-1.9
3,658,510	+		LRK54_RS16665	0.18	-0.5
3,658,510	+		LRK54_RS16665	0.18	-0.8
3,658,510	+		LRK54_RS16665	0.18	-0.8
3,658,510	+		LRK54_RS16665	0.18	-1.2
3,658,510	+		LRK54_RS16665	0.18	-0.5
3,658,510	+		LRK54_RS16665	0.18	-0.1
3,658,510	+		LRK54_RS16665	0.18	-0.5
3,658,510	+		LRK54_RS16665	0.18	-2.3
3,658,510	+		LRK54_RS16665	0.18	-1.0
3,658,511	-		LRK54_RS16665	0.18	-1.6
3,658,511	-		LRK54_RS16665	0.18	-3.2
3,658,511	-		LRK54_RS16665	0.18	-1.2
3,658,511	-		LRK54_RS16665	0.18	-0.5
3,658,511	-		LRK54_RS16665	0.18	-2.7
3,658,511	-		LRK54_RS16665	0.18	-1.5
3,658,511	-		LRK54_RS16665	0.18	-0.5
3,658,511	-		LRK54_RS16665	0.18	-0.4
3,658,511	-		LRK54_RS16665	0.18	-0.6
3,658,511	-		LRK54_RS16665	0.18	+0.0
3,658,511	-		LRK54_RS16665	0.18	-2.0
3,658,511	-		LRK54_RS16665	0.18	-0.5
3,658,511	-		LRK54_RS16665	0.18	+1.8
3,658,511	-		LRK54_RS16665	0.18	-1.6
3,658,511	-		LRK54_RS16665	0.18	-1.2
3,658,511	-		LRK54_RS16665	0.18	-2.6
3,658,511	-		LRK54_RS16665	0.18	-1.2
3,658,538	-		LRK54_RS16665	0.20	-1.8
3,658,538	-		LRK54_RS16665	0.20	+0.2
3,658,538	-		LRK54_RS16665	0.20	-2.7
3,658,538	-		LRK54_RS16665	0.20	-1.9
3,658,606	+		LRK54_RS16665	0.27	-0.1
3,658,606	+		LRK54_RS16665	0.27	-2.1
3,658,606	+		LRK54_RS16665	0.27	-1.8
3,658,606	+		LRK54_RS16665	0.27	-0.3
3,658,606	+		LRK54_RS16665	0.27	+0.2
3,658,606	+		LRK54_RS16665	0.27	+0.8
3,658,606	+		LRK54_RS16665	0.27	+1.2
3,658,606	+		LRK54_RS16665	0.27	-1.2
3,658,606	+		LRK54_RS16665	0.27	-1.2
3,658,606	+		LRK54_RS16665	0.27	-0.8
3,658,607	-		LRK54_RS16665	0.27	-0.2
3,658,607	-		LRK54_RS16665	0.27	+1.8
3,658,607	-		LRK54_RS16665	0.27	-1.8
3,658,607	-		LRK54_RS16665	0.27	-2.4
3,658,607	-		LRK54_RS16665	0.27	-0.2
3,658,758	-		LRK54_RS16665	0.42	-1.2
3,659,098	+		LRK54_RS16665	0.76	-2.4
3,659,098	+		LRK54_RS16665	0.76	+0.8
3,659,098	+		LRK54_RS16665	0.76	-2.6
3,659,098	+		LRK54_RS16665	0.76	-0.4
3,659,098	+		LRK54_RS16665	0.76	-0.2
3,659,098	+		LRK54_RS16665	0.76	+0.0
3,659,098	+		LRK54_RS16665	0.76	+0.2
3,659,098	+		LRK54_RS16665	0.76	-0.8
3,659,098	+		LRK54_RS16665	0.76	-2.3
3,659,099	-		LRK54_RS16665	0.76	-0.2
3,659,099	-		LRK54_RS16665	0.76	+1.8
3,659,099	-		LRK54_RS16665	0.76	-2.2
3,659,099	-		LRK54_RS16665	0.76	-2.3
3,659,099	-		LRK54_RS16665	0.76	+0.8
3,659,099	-		LRK54_RS16665	0.76	+0.2
3,659,099	-		LRK54_RS16665	0.76	-2.4
3,659,099	-		LRK54_RS16665	0.76	-1.6
3,659,099	-		LRK54_RS16665	0.76	-0.2
3,659,099	-		LRK54_RS16665	0.76	-1.2
3,659,099	-		LRK54_RS16665	0.76	-0.8
3,659,099	-		LRK54_RS16665	0.76	+0.2
3,659,170	+		LRK54_RS16665	0.84	-1.2
3,659,170	+		LRK54_RS16665	0.84	-1.6
3,659,170	+		LRK54_RS16665	0.84	-2.3
3,659,171	-		LRK54_RS16665	0.84	-2.1
3,659,257	-				-0.3
3,659,257	-				-0.2
3,659,317	+				+0.2
3,659,317	+				-2.6
3,659,317	+				+0.9
3,659,318	-				-0.2
3,659,318	-				-2.0
3,659,318	-				-2.6
3,659,318	-				-1.6
3,659,318	-				-1.0
3,659,318	-				-0.5
3,659,318	-				-1.9
3,659,318	-				-2.5
3,659,332	+				+0.2
3,659,332	+				-0.4
3,659,332	+				+0.1
3,659,332	+				-0.9
3,659,332	+				-0.3
3,659,332	+				+1.6
3,659,332	+				+0.2
3,659,332	+				+0.2
3,659,332	+				+1.3
3,659,332	+				-0.1
3,659,332	+				-0.7
3,659,332	+				+0.7
3,659,332	+				-1.1
3,659,332	+				+0.1
3,659,332	+				-0.5
3,659,332	+				-1.2
3,659,332	+				+0.8
3,659,332	+				+0.2
3,659,332	+				-1.5
3,659,332	+				+0.4
3,659,332	+				-1.6
3,659,333	-				-0.1
3,659,333	-				+0.4
3,659,333	-				+1.4
3,659,333	-				+0.0
3,659,333	-				+0.8
3,659,333	-				+0.2
3,659,333	-				-0.7
3,659,333	-				-1.6
3,659,333	-				+0.1
3,659,333	-				-1.4
3,659,333	-				+1.0
3,659,333	-				+0.4
3,659,333	-				+0.5
3,659,333	-				-0.5
3,659,333	-				-0.6
3,659,333	-				+1.0
3,659,333	-				-0.8
3,659,333	-				+0.0
3,659,333	-				+0.2
3,659,333	-				-0.6
3,659,333	-				-0.7
3,659,333	-				-0.3
3,659,333	-				+0.8
3,659,333	-				+0.1
3,659,333	-				+0.4
3,659,333	-				-1.3
3,659,333	-				+0.5
3,659,347	+				-0.1
3,659,347	+				-0.6
3,659,347	+				+1.8
3,659,348	-				-1.6
3,659,348	-				+0.8
3,659,348	-				-1.0
3,659,348	-				+0.5
3,659,348	-				-1.5
3,659,348	-				-0.9
3,659,348	-				+1.7
3,659,401	-				+0.4
3,659,451	+		LRK54_RS16670	0.14	-2.0
3,659,451	+		LRK54_RS16670	0.14	-0.8
3,659,451	+		LRK54_RS16670	0.14	+1.8
3,659,451	+		LRK54_RS16670	0.14	+0.1
3,659,451	+		LRK54_RS16670	0.14	+0.2
3,659,451	+		LRK54_RS16670	0.14	-2.3
3,659,451	+		LRK54_RS16670	0.14	-2.3
3,659,451	+		LRK54_RS16670	0.14	-1.8
3,659,451	+		LRK54_RS16670	0.14	-1.2
3,659,451	+		LRK54_RS16670	0.14	-1.9
3,659,451	+		LRK54_RS16670	0.14	+0.8
3,659,451	+		LRK54_RS16670	0.14	-1.6
3,659,451	+		LRK54_RS16670	0.14	-1.0
3,659,451	+		LRK54_RS16670	0.14	-1.8
3,659,451	+		LRK54_RS16670	0.14	-1.3
3,659,451	+		LRK54_RS16670	0.14	-1.3
3,659,451	+		LRK54_RS16670	0.14	-2.7
3,659,451	+		LRK54_RS16670	0.14	-2.4
3,659,451	+		LRK54_RS16670	0.14	-2.0
3,659,452	-		LRK54_RS16670	0.14	-1.6
3,659,452	-		LRK54_RS16670	0.14	+0.8
3,659,452	-		LRK54_RS16670	0.14	+0.1
3,659,452	-		LRK54_RS16670	0.14	-1.2
3,659,452	-		LRK54_RS16670	0.14	+0.2
3,659,452	-		LRK54_RS16670	0.14	+0.2
3,659,452	-		LRK54_RS16670	0.14	-1.4
3,659,452	-		LRK54_RS16670	0.14	+1.1
3,659,452	-		LRK54_RS16670	0.14	-1.1
3,659,452	-		LRK54_RS16670	0.14	-1.8
3,659,452	-		LRK54_RS16670	0.14	-0.8
3,659,452	-		LRK54_RS16670	0.14	-2.6
3,659,452	-		LRK54_RS16670	0.14	-2.8
3,659,452	-		LRK54_RS16670	0.14	-0.8
3,659,452	-		LRK54_RS16670	0.14	-0.5
3,659,452	-		LRK54_RS16670	0.14	-0.8
3,659,452	-		LRK54_RS16670	0.14	-0.8
3,659,452	-		LRK54_RS16670	0.14	-0.8
3,659,452	-		LRK54_RS16670	0.14	-0.8
3,659,452	-		LRK54_RS16670	0.14	-1.4
3,659,452	-		LRK54_RS16670	0.14	+0.8
3,659,452	-		LRK54_RS16670	0.14	-2.0
3,659,452	-		LRK54_RS16670	0.14	-0.2
3,659,452	-		LRK54_RS16670	0.14	+1.2
3,659,452	-		LRK54_RS16670	0.14	+0.2
3,659,452	-		LRK54_RS16670	0.14	-0.4
3,659,452	-		LRK54_RS16670	0.14	+1.5
3,659,452	-		LRK54_RS16670	0.14	-1.6
3,659,452	-		LRK54_RS16670	0.14	+2.2
3,659,730	+		LRK54_RS16670	0.90	-0.5
3,659,730	+		LRK54_RS16670	0.90	-0.8
3,659,730	+		LRK54_RS16670	0.90	-1.1
3,659,730	+		LRK54_RS16670	0.90	+0.2
3,659,730	+		LRK54_RS16670	0.90	-1.1
3,659,730	+		LRK54_RS16670	0.90	+0.2
3,659,730	+		LRK54_RS16670	0.90	-2.2
3,659,730	+		LRK54_RS16670	0.90	-0.7
3,659,730	+		LRK54_RS16670	0.90	+0.2
3,659,730	+		LRK54_RS16670	0.90	-2.3
3,659,730	+		LRK54_RS16670	0.90	-0.7
3,659,730	+		LRK54_RS16670	0.90	-1.7
3,659,730	+		LRK54_RS16670	0.90	-1.9
3,659,730	+		LRK54_RS16670	0.90	+0.2
3,659,730	+		LRK54_RS16670	0.90	-1.8
3,659,730	+		LRK54_RS16670	0.90	-2.0
3,659,730	+		LRK54_RS16670	0.90	-0.8
3,659,730	+		LRK54_RS16670	0.90	-0.8
3,659,730	+		LRK54_RS16670	0.90	+0.2
3,659,730	+		LRK54_RS16670	0.90	+0.3
3,659,730	+		LRK54_RS16670	0.90	+0.8
3,659,730	+		LRK54_RS16670	0.90	-2.0
3,659,730	+		LRK54_RS16670	0.90	-1.8
3,659,730	+		LRK54_RS16670	0.90	+0.1
3,659,730	+		LRK54_RS16670	0.90	-2.3
3,659,730	+		LRK54_RS16670	0.90	-1.7
3,659,730	+		LRK54_RS16670	0.90	-0.3
3,659,730	+		LRK54_RS16670	0.90	+0.0
3,659,730	+		LRK54_RS16670	0.90	-2.7
3,659,730	+		LRK54_RS16670	0.90	-1.3
3,659,730	+		LRK54_RS16670	0.90	-2.6
3,659,730	+		LRK54_RS16670	0.90	+2.3
3,659,730	+		LRK54_RS16670	0.90	-0.2
3,659,730	+		LRK54_RS16670	0.90	-0.2
3,659,730	+		LRK54_RS16670	0.90	+1.2
3,659,730	+		LRK54_RS16670	0.90	-1.8
3,659,730	+		LRK54_RS16670	0.90	-0.5
3,659,730	+		LRK54_RS16670	0.90	-1.2
3,659,730	+		LRK54_RS16670	0.90	-0.5
3,659,730	+		LRK54_RS16670	0.90	-3.1
3,659,730	+		LRK54_RS16670	0.90	-1.6
3,659,730	+		LRK54_RS16670	0.90	-0.5
3,659,730	+		LRK54_RS16670	0.90	-1.2
3,659,730	+		LRK54_RS16670	0.90	-0.2
3,659,730	+		LRK54_RS16670	0.90	+0.5
3,659,730	+		LRK54_RS16670	0.90	-0.5
3,659,730	+		LRK54_RS16670	0.90	-0.2
3,659,730	+		LRK54_RS16670	0.90	-1.2
3,659,730	+		LRK54_RS16670	0.90	+0.2
3,659,730	+		LRK54_RS16670	0.90	-1.2
3,659,730	+		LRK54_RS16670	0.90	+1.0
3,659,730	+		LRK54_RS16670	0.90	-0.5
3,659,731	-				-0.2
3,659,731	-				-1.3
3,659,731	-				-1.0
3,659,731	-				-0.8
3,659,731	-				-0.5
3,659,731	-				-1.3
3,659,731	-				+1.0
3,659,731	-				-0.5
3,659,731	-				-0.8
3,659,731	-				-0.5
3,659,731	-				-0.6
3,659,731	-				-0.1
3,659,731	-				-1.3
3,659,731	-				+1.8
3,659,731	-				-2.0
3,659,731	-				-0.1
3,659,731	-				-1.3
3,659,731	-				-2.1
3,659,731	-				-2.4
3,659,731	-				-0.2
3,659,731	-				-1.2
3,659,731	-				-0.5
3,659,731	-				-1.2
3,659,731	-				-1.3
3,659,731	-				+0.4
3,659,731	-				-0.5
3,659,731	-				-1.9
3,659,731	-				-2.2
3,659,731	-				-1.2
3,659,731	-				-3.1
3,659,731	-				+1.8
3,659,731	-				+1.1
3,659,731	-				-1.4
3,659,731	-				-1.6
3,659,731	-				-1.2
3,659,731	-				-1.0
3,659,731	-				-1.6
3,659,731	-				-1.5
3,659,731	-				-0.4
3,659,731	-				-1.0
3,659,731	-				+0.1
3,659,731	-				-2.0
3,659,731	-				-1.7
3,659,731	-				-1.3
3,659,731	-				+0.1
3,659,731	-				-0.5
3,659,731	-				-1.1
3,659,731	-				+2.1
3,659,731	-				-1.9
3,659,734	+				-2.6
3,659,734	+				-0.5
3,659,734	+				+0.1
3,659,734	+				-0.5
3,659,734	+				-0.9
3,659,734	+				-1.6
3,659,734	+				-2.3
3,659,734	+				-0.3
3,659,734	+				+1.8
3,659,734	+				-1.3
3,659,734	+				+1.8
3,659,734	+				-0.8
3,659,734	+				-0.7
3,659,734	+				-2.4
3,659,734	+				-0.5
3,659,734	+				-1.8
3,659,734	+				-0.3
3,659,734	+				+0.8
3,659,734	+				-0.5
3,659,734	+				-1.3
3,659,734	+				-0.5
3,659,734	+				-2.0
3,659,734	+				-1.9
3,659,734	+				-0.3
3,659,734	+				+1.4
3,659,734	+				-1.1
3,659,734	+				-0.8
3,659,734	+				-0.6
3,659,734	+				-0.6
3,659,734	+				-0.8
3,659,734	+				-1.5
3,659,734	+				-1.6
3,659,734	+				-0.5
3,659,734	+				-0.5
3,659,734	+				-3.0
3,659,734	+				-1.0
3,659,734	+				-1.0
3,659,735	-				-0.7
3,659,735	-				+0.3
3,659,735	-				-1.0
3,659,735	-				+0.3
3,659,735	-				-0.4
3,659,735	-				-0.8
3,659,735	-				-2.2
3,659,735	-				-1.3
3,659,735	-				-0.7
3,659,735	-				-1.3
3,659,735	-				-0.6
3,659,735	-				+0.2
3,659,735	-				-1.0
3,659,735	-				-2.4
3,659,735	-				+0.6
3,659,735	-				+0.2
3,659,735	-				-0.5
3,659,735	-				-1.5
3,659,735	-				+0.4
3,659,735	-				+0.1
3,659,735	-				-1.6
3,659,735	-				-1.4
3,659,735	-				+0.5
3,659,735	-				-0.7
3,659,736	+				-1.2
3,659,736	+				-1.2
3,659,736	+				-1.5
3,659,736	+				-0.3
3,659,736	+				-0.2
3,659,736	+				-0.2
3,659,736	+				-0.2
3,659,736	+				-1.7
3,659,736	+				+0.2
3,659,736	+				+0.8
3,659,736	+				-0.8
3,659,736	+				-3.0
3,659,736	+				-0.3
3,659,736	+				-1.0
3,659,736	+				-1.6
3,659,736	+				-0.2
3,659,736	+				-1.6
3,659,736	+				-1.8
3,659,736	+				-1.6
3,659,736	+				-0.5
3,659,736	+				-1.3
3,659,736	+				-0.8
3,659,736	+				-1.6
3,659,737	-				-1.5
3,659,737	-				-0.3
3,659,737	-				+0.2
3,659,737	-				-1.5
3,659,737	-				-1.2
3,659,737	-				+1.3
3,659,737	-				-1.0
3,659,737	-				-0.5
3,659,737	-				-0.2
3,659,737	-				-1.8
3,659,737	-				-1.2
3,659,737	-				-0.3
3,659,737	-				+1.1
3,659,737	-				-1.5
3,659,737	-				-0.4
3,659,737	-				+1.1
3,659,737	-				+0.4
3,659,737	-				-1.2
3,659,737	-				-0.7
3,659,737	-				+0.1
3,659,869	+		LRK54_RS16675	0.34	+0.7
3,659,869	+		LRK54_RS16675	0.34	-1.1
3,659,869	+		LRK54_RS16675	0.34	-0.4
3,659,869	+		LRK54_RS16675	0.34	-2.0
3,659,869	+		LRK54_RS16675	0.34	-1.8
3,659,869	+		LRK54_RS16675	0.34	-0.4
3,659,869	+		LRK54_RS16675	0.34	+0.1
3,659,869	+		LRK54_RS16675	0.34	+0.8
3,659,869	+		LRK54_RS16675	0.34	-0.2
3,659,869	+		LRK54_RS16675	0.34	+1.2
3,659,869	+		LRK54_RS16675	0.34	+0.2
3,659,869	+		LRK54_RS16675	0.34	+0.1
3,659,869	+		LRK54_RS16675	0.34	-0.5
3,659,869	+		LRK54_RS16675	0.34	-1.0
3,659,869	+		LRK54_RS16675	0.34	-1.9
3,659,869	+		LRK54_RS16675	0.34	-0.5
3,659,869	+		LRK54_RS16675	0.34	-0.3
3,659,869	+		LRK54_RS16675	0.34	-0.5
3,659,869	+		LRK54_RS16675	0.34	-0.1
3,659,869	+		LRK54_RS16675	0.34	-0.1
3,659,869	+		LRK54_RS16675	0.34	+0.0
3,659,869	+		LRK54_RS16675	0.34	-2.1
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3,659,870	-		LRK54_RS16675	0.35	-0.2
3,659,870	-		LRK54_RS16675	0.35	+0.8
3,659,870	-		LRK54_RS16675	0.35	+0.5
3,659,870	-		LRK54_RS16675	0.35	-0.1
3,659,870	-		LRK54_RS16675	0.35	+0.2
3,659,870	-		LRK54_RS16675	0.35	-1.7
3,659,870	-		LRK54_RS16675	0.35	+0.2
3,659,870	-		LRK54_RS16675	0.35	-0.6
3,659,870	-		LRK54_RS16675	0.35	-0.5
3,659,870	-		LRK54_RS16675	0.35	+0.8
3,659,870	-		LRK54_RS16675	0.35	-1.3
3,659,870	-		LRK54_RS16675	0.35	-0.8
3,659,870	-		LRK54_RS16675	0.35	-0.9
3,659,870	-		LRK54_RS16675	0.35	-0.2
3,659,870	-		LRK54_RS16675	0.35	+0.2
3,659,870	-		LRK54_RS16675	0.35	+0.8
3,659,870	-		LRK54_RS16675	0.35	-1.8
3,659,870	-		LRK54_RS16675	0.35	-0.4
3,659,870	-		LRK54_RS16675	0.35	-0.6
3,659,870	-		LRK54_RS16675	0.35	-0.9
3,660,036	-				+0.2
3,660,036	-				-1.0
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3,660,103	+				+0.9
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3,660,103	+				+0.5
3,660,104	-				+0.2
3,660,104	-				+0.2
3,660,104	-				-0.2
3,660,244	+		LRK54_RS16680	0.15	+0.5