Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14825

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,276,227	+				+0.3
3,276,227	+				+1.4
3,276,227	+				+0.1
3,276,227	+				-0.1
3,276,227	+				-1.0
3,276,227	+				+1.4
3,276,227	+				-0.7
3,276,227	+				+0.5
3,276,227	+				+0.7
3,276,227	+				+0.2
3,276,227	+				-1.0
3,276,227	+				+0.5
3,276,227	+				-1.2
3,276,227	+				+0.6
3,276,227	+				-1.5
3,276,227	+				-1.1
3,276,228	-				+0.4
3,276,228	-				-0.0
3,276,228	-				-1.2
3,276,228	-				-1.5
3,276,228	-				-0.8
3,276,228	-				-0.7
3,276,228	-				+1.8
3,276,228	-				-1.3
3,276,228	-				-0.2
3,276,228	-				-1.9
3,276,228	-				+0.3
3,276,228	-				-0.4
3,276,228	-				-0.8
3,276,228	-				-0.0
3,276,229	+				-1.4
3,276,229	+				+0.8
3,276,230	-				-0.7
3,276,465	+		LRK54_RS14820	0.26	-0.3
3,276,465	+		LRK54_RS14820	0.26	-1.0
3,276,466	-		LRK54_RS14820	0.27	-0.4
3,276,466	-		LRK54_RS14820	0.27	+0.1
3,276,564	+		LRK54_RS14820	0.38	+1.1
3,276,564	+		LRK54_RS14820	0.38	+0.1
3,276,564	+		LRK54_RS14820	0.38	+0.4
3,276,565	-		LRK54_RS14820	0.38	+0.2
3,276,565	-		LRK54_RS14820	0.38	-0.1
3,276,565	-		LRK54_RS14820	0.38	-1.6
3,276,594	+		LRK54_RS14820	0.41	+1.1
3,276,594	+		LRK54_RS14820	0.41	-0.0
3,276,594	+		LRK54_RS14820	0.41	-0.9
3,276,595	-		LRK54_RS14820	0.41	+0.8
3,276,595	-		LRK54_RS14820	0.41	-0.9
3,276,595	-		LRK54_RS14820	0.41	+0.5
3,276,595	-		LRK54_RS14820	0.41	+0.2
3,276,595	-		LRK54_RS14820	0.41	+0.1
3,276,600	+		LRK54_RS14820	0.42	+0.2
3,276,600	+		LRK54_RS14820	0.42	+0.4
3,276,600	+		LRK54_RS14820	0.42	+0.0
3,276,600	+		LRK54_RS14820	0.42	+1.0
3,276,600	+		LRK54_RS14820	0.42	+1.4
3,276,600	+		LRK54_RS14820	0.42	+0.5
3,276,600	+		LRK54_RS14820	0.42	-0.6
3,276,600	+		LRK54_RS14820	0.42	+0.1
3,276,600	+		LRK54_RS14820	0.42	+1.0
3,276,600	+		LRK54_RS14820	0.42	-0.2
3,276,600	+		LRK54_RS14820	0.42	-1.0
3,276,600	+		LRK54_RS14820	0.42	+1.3
3,276,600	+		LRK54_RS14820	0.42	-0.0
3,276,600	+		LRK54_RS14820	0.42	+0.8
3,276,600	+		LRK54_RS14820	0.42	+0.8
3,276,600	+		LRK54_RS14820	0.42	+1.3
3,276,600	+		LRK54_RS14820	0.42	-0.3
3,276,600	+		LRK54_RS14820	0.42	+1.4
3,276,600	+		LRK54_RS14820	0.42	+0.2
3,276,601	-		LRK54_RS14820	0.42	+0.5
3,276,601	-		LRK54_RS14820	0.42	+0.4
3,276,601	-		LRK54_RS14820	0.42	+1.7
3,276,601	-		LRK54_RS14820	0.42	-1.6
3,276,601	-		LRK54_RS14820	0.42	+0.3
3,276,601	-		LRK54_RS14820	0.42	+0.6
3,276,601	-		LRK54_RS14820	0.42	-0.7
3,276,601	-		LRK54_RS14820	0.42	+0.2
3,276,601	-		LRK54_RS14820	0.42	+0.4
3,276,601	-		LRK54_RS14820	0.42	-1.0
3,276,601	-		LRK54_RS14820	0.42	+0.2
3,276,601	-		LRK54_RS14820	0.42	-0.5
3,276,601	-		LRK54_RS14820	0.42	+0.1
3,276,858	+		LRK54_RS14820	0.72	-1.2
3,276,858	+		LRK54_RS14820	0.72	-0.7
3,276,858	+		LRK54_RS14820	0.72	-0.9
3,276,858	+		LRK54_RS14820	0.72	-0.6
3,276,859	-		LRK54_RS14820	0.72	-0.2
3,276,859	-		LRK54_RS14820	0.72	+0.4
3,276,859	-		LRK54_RS14820	0.72	+0.8
3,276,859	-		LRK54_RS14820	0.72	-1.5
3,276,859	-		LRK54_RS14820	0.72	-0.5
3,277,095	+				+0.2
3,277,095	+				+1.0
3,277,095	+				-0.7
3,277,095	+				-0.1
3,277,095	+				+1.9
3,277,095	+				+0.8
3,277,096	-				-0.3
3,277,096	-				+1.8
3,277,096	-				-0.8
3,277,096	-				-0.4
3,277,096	-				-0.1
3,277,096	-				-1.0
3,277,113	+				+1.8
3,277,113	+				+1.0
3,277,113	+				-0.2
3,277,113	+				+0.4
3,277,113	+				+0.9
3,277,113	+				-0.7
3,277,113	+				+0.8
3,277,113	+				+1.2
3,277,113	+				+0.1
3,277,113	+				+0.4
3,277,113	+				+0.5
3,277,113	+				+0.2
3,277,113	+				+0.7
3,277,113	+				+1.0
3,277,113	+				+0.7
3,277,113	+				-0.2
3,277,113	+				+1.2
3,277,113	+				+0.0
3,277,113	+				+0.3
3,277,113	+				+0.9
3,277,113	+				+1.2
3,277,113	+				+0.2
3,277,113	+				+1.4
3,277,113	+				-0.5
3,277,113	+				+0.6
3,277,113	+				-0.3
3,277,113	+				+0.0
3,277,113	+				-0.1
3,277,113	+				+0.5
3,277,113	+				+0.3
3,277,113	+				+0.2
3,277,113	+				+0.4
3,277,113	+				+0.2
3,277,113	+				-1.2
3,277,113	+				+0.8
3,277,113	+				+1.0
3,277,113	+				+0.2
3,277,113	+				-0.7
3,277,113	+				-1.2
3,277,113	+				-0.8
3,277,113	+				-0.2
3,277,113	+				+0.5
3,277,113	+				-0.8
3,277,113	+				+0.3
3,277,114	-				-1.4
3,277,114	-				+0.3
3,277,114	-				-1.1
3,277,114	-				+0.8
3,277,114	-				-0.2
3,277,114	-				-1.1
3,277,114	-				+0.1
3,277,114	-				-3.1
3,277,114	-				-0.8
3,277,114	-				+0.8
3,277,114	-				-0.2
3,277,114	-				-1.0
3,277,114	-				+1.1
3,277,114	-				+0.2
3,277,114	-				+0.1
3,277,114	-				-0.9
3,277,114	-				-0.8
3,277,114	-				+0.8
3,277,114	-				+0.1
3,277,114	-				-1.1
3,277,114	-				-2.1
3,277,114	-				-0.2
3,277,114	-				-1.2
3,277,114	-				+0.0
3,277,114	-				+0.4
3,277,114	-				-1.1
3,277,114	-				-2.4
3,277,114	-				-2.9
3,277,114	-				-0.5
3,277,114	-				-1.2
3,277,114	-				-1.4
3,277,114	-				-2.7
3,277,114	-				-0.7
3,277,114	-				-0.6
3,277,197	+				-1.4
3,277,197	+				+2.8
3,277,197	+				-0.9
3,277,197	+				+2.3
3,277,197	+				+0.2
3,277,198	-				-0.6
3,277,198	-				-1.4
3,277,198	-				-2.0
3,277,342	+		LRK54_RS14825	0.15	-0.0
3,277,342	+		LRK54_RS14825	0.15	-0.2
3,277,342	+		LRK54_RS14825	0.15	-1.0
3,277,343	-		LRK54_RS14825	0.15	-1.6
3,277,343	-		LRK54_RS14825	0.15	-0.6
3,277,343	-		LRK54_RS14825	0.15	-0.6
3,277,343	-		LRK54_RS14825	0.15	+0.2
3,277,343	-		LRK54_RS14825	0.15	-1.2
3,277,343	-		LRK54_RS14825	0.15	-1.7
3,277,343	-		LRK54_RS14825	0.15	+0.2
3,277,343	-		LRK54_RS14825	0.15	-0.8
3,277,343	-		LRK54_RS14825	0.15	-0.8
3,277,525	+		LRK54_RS14825	0.35	-1.4
3,277,525	+		LRK54_RS14825	0.35	-1.2
3,277,525	+		LRK54_RS14825	0.35	-0.2
3,277,525	+		LRK54_RS14825	0.35	-1.2
3,277,526	-		LRK54_RS14825	0.35	+0.8
3,277,526	-		LRK54_RS14825	0.35	-2.2
3,277,526	-		LRK54_RS14825	0.35	-0.2
3,277,526	-		LRK54_RS14825	0.35	-1.2
3,277,526	-				+1.0
3,277,526	-		LRK54_RS14825	0.35	-0.2
3,277,703	+		LRK54_RS14825	0.55	-2.0
3,277,703	+		LRK54_RS14825	0.55	+0.8
3,277,703	+		LRK54_RS14825	0.55	-1.6
3,277,704	-		LRK54_RS14825	0.55	-2.6
3,277,704	-		LRK54_RS14825	0.55	-1.0
3,277,704	-		LRK54_RS14825	0.55	+0.8
3,277,704	-		LRK54_RS14825	0.55	-1.2
3,277,704	-		LRK54_RS14825	0.55	+0.8
3,277,704	-		LRK54_RS14825	0.55	-0.6
3,277,807	+		LRK54_RS14825	0.67	-1.9
3,277,807	+		LRK54_RS14825	0.67	-0.2
3,277,807	+		LRK54_RS14825	0.67	-1.4
3,277,808	-		LRK54_RS14825	0.67	-2.1
3,278,239	+				-0.1
3,278,239	+				+0.8
3,278,239	+				-1.0
3,278,239	+				+0.2
3,278,239	+				-0.7
3,278,239	+				+0.4
3,278,239	+				+0.2
3,278,239	+				-2.1
3,278,239	+				-0.2
3,278,239	+				+0.6
3,278,239	+				-1.6
3,278,239	+				+0.1
3,278,239	+				+0.8
3,278,239	+				-0.2
3,278,239	+				-0.1
3,278,239	+				+0.8
3,278,239	+				+0.0
3,278,239	+				-0.1
3,278,239	+				+1.2
3,278,239	+				-0.6
3,278,239	+				+0.2
3,278,239	+				+0.2
3,278,239	+				-1.0
3,278,240	-				-0.6
3,278,240	-				-0.5
3,278,240	-				+0.0
3,278,240	-				-1.1
3,278,240	-				-2.5
3,278,240	-				-1.0
3,278,240	-				+0.6
3,278,240	-				-0.7
3,278,240	-				+0.6
3,278,240	-				+0.4
3,278,240	-				-1.7
3,278,240	-				-0.6
3,278,240	-				-0.8
3,278,240	-				-0.1
3,278,240	-				-1.0
3,278,240	-				-0.6
3,278,240	-				-1.0
3,278,240	-				-1.0
3,278,240	-				-1.5
3,278,240	-				-1.3
3,278,240	-				-0.5
3,278,240	-				-0.2
3,278,240	-				-0.2
3,278,240	-				-1.9
3,278,343	+				-0.9
3,278,344	-				-2.1
3,278,344	-				-2.0
3,278,344	-				-0.8
3,278,344	-				-1.7
3,278,344	-				-1.8
3,278,652	+		LRK54_RS14830	0.21	-0.4
3,278,652	+		LRK54_RS14830	0.21	+0.6
3,278,652	+		LRK54_RS14830	0.21	-1.6
3,278,652	+		LRK54_RS14830	0.21	-0.6
3,278,652	+		LRK54_RS14830	0.21	+0.1
3,278,652	+		LRK54_RS14830	0.21	-0.7
3,278,653	-		LRK54_RS14830	0.21	+0.1
3,278,653	-		LRK54_RS14830	0.21	-0.8
3,278,653	-		LRK54_RS14830	0.21	-1.4
3,278,653	-		LRK54_RS14830	0.21	-0.7
3,278,653	-		LRK54_RS14830	0.21	-1.2
3,278,754	+		LRK54_RS14830	0.26	+0.1
3,278,754	+		LRK54_RS14830	0.26	-0.2
3,278,754	+		LRK54_RS14830	0.26	-0.2
3,278,754	+		LRK54_RS14830	0.26	+0.8
3,278,754	+		LRK54_RS14830	0.26	-0.3
3,278,755	-		LRK54_RS14830	0.26	-0.4
3,278,755	-		LRK54_RS14830	0.26	-1.1
3,278,868	+		LRK54_RS14830	0.32	-1.9
3,279,000	+		LRK54_RS14830	0.39	-0.9
3,279,000	+		LRK54_RS14830	0.39	+0.8
3,279,000	+		LRK54_RS14830	0.39	+0.8
3,279,000	+		LRK54_RS14830	0.39	-0.7
3,279,000	+		LRK54_RS14830	0.39	-0.8
3,279,001	-		LRK54_RS14830	0.39	-1.1
3,279,001	-		LRK54_RS14830	0.39	-3.3
3,279,001	-		LRK54_RS14830	0.39	-1.0
3,279,001	-		LRK54_RS14830	0.39	-0.1
3,279,001	-		LRK54_RS14830	0.39	-1.7
3,279,001	-		LRK54_RS14830	0.39	-1.1
3,279,012	+		LRK54_RS14830	0.40	-1.8
3,279,012	+		LRK54_RS14830	0.40	-1.0
3,279,012	+		LRK54_RS14830	0.40	-1.6
3,279,012	+		LRK54_RS14830	0.40	-1.6
3,279,012	+		LRK54_RS14830	0.40	-0.4
3,279,012	+		LRK54_RS14830	0.40	-0.6
3,279,012	+		LRK54_RS14830	0.40	-0.4
3,279,012	+		LRK54_RS14830	0.40	+0.0
3,279,012	+		LRK54_RS14830	0.40	-0.8
3,279,012	+		LRK54_RS14830	0.40	-1.0
3,279,012	+		LRK54_RS14830	0.40	-1.6
3,279,012	+		LRK54_RS14830	0.40	-1.8
3,279,012	+		LRK54_RS14830	0.40	-2.1
3,279,013	-		LRK54_RS14830	0.40	-1.7
3,279,013	-		LRK54_RS14830	0.40	-2.0
3,279,013	-		LRK54_RS14830	0.40	-1.9
3,279,013	-		LRK54_RS14830	0.40	+0.6
3,279,013	-		LRK54_RS14830	0.40	-2.5
3,279,013	-		LRK54_RS14830	0.40	-0.9
3,279,013	-		LRK54_RS14830	0.40	-0.0
3,279,013	-		LRK54_RS14830	0.40	+0.2
3,279,013	-		LRK54_RS14830	0.40	-0.4
3,279,013	-		LRK54_RS14830	0.40	-1.6
3,279,013	-		LRK54_RS14830	0.40	-1.4
3,279,013	-		LRK54_RS14830	0.40	-0.2
3,279,013	-		LRK54_RS14830	0.40	-0.9
3,279,013	-		LRK54_RS14830	0.40	+0.2
3,279,013	-		LRK54_RS14830	0.40	+0.8
3,279,013	-		LRK54_RS14830	0.40	-2.2
3,279,074	+		LRK54_RS14830	0.43	-0.7
3,279,074	+		LRK54_RS14830	0.43	+0.1
3,279,074	+		LRK54_RS14830	0.43	-1.2
3,279,074	+		LRK54_RS14830	0.43	-2.2
3,279,075	-		LRK54_RS14830	0.43	-1.6
3,279,099	+		LRK54_RS14830	0.44	+0.7
3,279,099	+		LRK54_RS14830	0.44	+1.8
3,279,099	+		LRK54_RS14830	0.44	-0.7
3,279,099	+		LRK54_RS14830	0.44	+0.2
3,279,099	+		LRK54_RS14830	0.44	+0.2
3,279,099	+		LRK54_RS14830	0.44	-1.0
3,279,099	+		LRK54_RS14830	0.44	-1.3
3,279,099	+		LRK54_RS14830	0.44	-0.1
3,279,099	+		LRK54_RS14830	0.44	-0.8
3,279,099	+		LRK54_RS14830	0.44	-1.2
3,279,099	+		LRK54_RS14830	0.44	+0.2
3,279,099	+		LRK54_RS14830	0.44	-1.7
3,279,099	+		LRK54_RS14830	0.44	-0.8
3,279,099	+		LRK54_RS14830	0.44	-1.3
3,279,099	+		LRK54_RS14830	0.44	-0.1
3,279,099	+		LRK54_RS14830	0.44	-0.6
3,279,099	+		LRK54_RS14830	0.44	+1.0
3,279,099	+		LRK54_RS14830	0.44	-2.3
3,279,099	+		LRK54_RS14830	0.44	-0.7
3,279,099	+		LRK54_RS14830	0.44	+0.8
3,279,099	+		LRK54_RS14830	0.44	-2.1
3,279,099	+		LRK54_RS14830	0.44	-0.4
3,279,099	+		LRK54_RS14830	0.44	-0.8
3,279,099	+		LRK54_RS14830	0.44	-0.9
3,279,099	+		LRK54_RS14830	0.44	-1.8
3,279,099	+		LRK54_RS14830	0.44	-0.2
3,279,099	+		LRK54_RS14830	0.44	-0.3
3,279,099	+		LRK54_RS14830	0.44	-2.9
3,279,099	+		LRK54_RS14830	0.44	-0.2
3,279,099	+		LRK54_RS14830	0.44	-0.2
3,279,099	+		LRK54_RS14830	0.44	+0.8
3,279,099	+		LRK54_RS14830	0.44	-1.7
3,279,099	+		LRK54_RS14830	0.44	-0.2
3,279,099	+		LRK54_RS14830	0.44	-1.7
3,279,099	+		LRK54_RS14830	0.44	-1.4
3,279,100	-		LRK54_RS14830	0.45	-0.8
3,279,100	-		LRK54_RS14830	0.45	-1.0
3,279,100	-		LRK54_RS14830	0.45	+1.2
3,279,100	-		LRK54_RS14830	0.45	-0.8
3,279,100	-		LRK54_RS14830	0.45	-0.6
3,279,100	-		LRK54_RS14830	0.45	+1.0
3,279,100	-		LRK54_RS14830	0.45	-0.7
3,279,100	-		LRK54_RS14830	0.45	-0.3
3,279,100	-		LRK54_RS14830	0.45	-2.2
3,279,100	-		LRK54_RS14830	0.45	-0.4
3,279,100	-		LRK54_RS14830	0.45	-0.8
3,279,100	-		LRK54_RS14830	0.45	-0.6
3,279,100	-		LRK54_RS14830	0.45	-0.8
3,279,100	-		LRK54_RS14830	0.45	-2.2
3,279,100	-		LRK54_RS14830	0.45	-0.2
3,279,100	-		LRK54_RS14830	0.45	-1.2
3,279,100	-		LRK54_RS14830	0.45	-1.6
3,279,100	-		LRK54_RS14830	0.45	-1.0
3,279,100	-		LRK54_RS14830	0.45	-2.0
3,279,100	-		LRK54_RS14830	0.45	-4.1
3,279,100	-		LRK54_RS14830	0.45	-0.6
3,279,100	-		LRK54_RS14830	0.45	-0.2
3,279,100	-		LRK54_RS14830	0.45	-0.6
3,279,100	-		LRK54_RS14830	0.45	-0.4
3,279,100	-		LRK54_RS14830	0.45	-1.3
3,279,100	-		LRK54_RS14830	0.45	-1.3
3,279,100	-		LRK54_RS14830	0.45	-1.9
3,279,100	-		LRK54_RS14830	0.45	-0.2
3,279,100	-		LRK54_RS14830	0.45	-2.4