Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09720

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,125,265	+				+1.1
2,125,265	+				+0.1
2,125,265	+				-0.4
2,125,265	+				+0.9
2,125,266	-				-1.6
2,125,266	-				-0.3
2,125,266	-				+0.2
2,125,387	-				+0.2
2,125,387	-				-1.3
2,125,450	+		LRK54_RS09720	0.15	-0.2
2,125,450	+		LRK54_RS09720	0.15	-1.2
2,125,450	+		LRK54_RS09720	0.15	+0.7
2,125,450	+		LRK54_RS09720	0.15	-2.0
2,125,450	+		LRK54_RS09720	0.15	+0.1
2,125,450	+		LRK54_RS09720	0.15	-0.7
2,125,450	+		LRK54_RS09720	0.15	-1.2
2,125,450	+		LRK54_RS09720	0.15	-0.3
2,125,450	+		LRK54_RS09720	0.15	-0.8
2,125,450	+		LRK54_RS09720	0.15	-1.1
2,125,450	+		LRK54_RS09720	0.15	-0.3
2,125,451	-		LRK54_RS09720	0.15	-2.1
2,125,451	-		LRK54_RS09720	0.15	-0.3
2,125,451	-		LRK54_RS09720	0.15	-2.5
2,125,451	-		LRK54_RS09720	0.15	-1.6
2,125,451	-		LRK54_RS09720	0.15	-0.6
2,125,451	-		LRK54_RS09720	0.15	-2.5
2,125,451	-		LRK54_RS09720	0.15	-2.0
2,125,451	-		LRK54_RS09720	0.15	-1.9
2,125,451	-		LRK54_RS09720	0.15	-0.1
2,125,451	-		LRK54_RS09720	0.15	-1.3
2,125,451	-		LRK54_RS09720	0.15	+0.1
2,125,451	-		LRK54_RS09720	0.15	+0.1
2,125,451	-		LRK54_RS09720	0.15	-1.1
2,125,451	-		LRK54_RS09720	0.15	-1.7
2,125,451	-		LRK54_RS09720	0.15	-2.4
2,125,451	-		LRK54_RS09720	0.15	-1.1
2,125,490	+		LRK54_RS09720	0.19	-2.7
2,125,490	+		LRK54_RS09720	0.19	-2.6
2,125,491	-		LRK54_RS09720	0.19	-0.7
2,125,608	+		LRK54_RS09720	0.31	-1.5
2,125,608	+		LRK54_RS09720	0.31	-2.0
2,125,608	+		LRK54_RS09720	0.31	-2.6
2,125,608	+		LRK54_RS09720	0.31	-0.3
2,125,608	+		LRK54_RS09720	0.31	-2.5
2,125,608	+		LRK54_RS09720	0.31	-0.9
2,125,608	+		LRK54_RS09720	0.31	-0.3
2,125,608	+		LRK54_RS09720	0.31	-0.4
2,125,608	+		LRK54_RS09720	0.31	-1.6
2,125,608	+		LRK54_RS09720	0.31	-1.5
2,125,608	+		LRK54_RS09720	0.31	-0.2
2,125,608	+		LRK54_RS09720	0.31	-0.8
2,125,608	+		LRK54_RS09720	0.31	-1.2
2,125,608	+		LRK54_RS09720	0.31	-1.1
2,125,608	+		LRK54_RS09720	0.31	-1.4
2,125,609	-		LRK54_RS09720	0.31	-1.6
2,125,609	-		LRK54_RS09720	0.31	-2.1
2,125,609	-		LRK54_RS09720	0.31	-1.5
2,125,609	-		LRK54_RS09720	0.31	-2.1
2,125,609	-		LRK54_RS09720	0.31	-2.0
2,125,609	-		LRK54_RS09720	0.31	-0.3
2,125,609	-		LRK54_RS09720	0.31	+0.7
2,125,609	-		LRK54_RS09720	0.31	-0.9
2,125,609	-		LRK54_RS09720	0.31	+0.7
2,125,609	-		LRK54_RS09720	0.31	-1.2
2,125,609	-		LRK54_RS09720	0.31	+0.1
2,125,609	-		LRK54_RS09720	0.31	-0.3
2,125,609	-		LRK54_RS09720	0.31	-2.7
2,125,609	-		LRK54_RS09720	0.31	-1.1
2,125,609	-		LRK54_RS09720	0.31	-2.9
2,125,663	+		LRK54_RS09720	0.36	-2.7
2,125,663	+		LRK54_RS09720	0.36	-2.1
2,125,663	+		LRK54_RS09720	0.36	-0.6
2,125,664	-		LRK54_RS09720	0.36	-0.3
2,125,741	+		LRK54_RS09720	0.44	-1.3
2,125,741	+		LRK54_RS09720	0.44	-0.9
2,125,741	+		LRK54_RS09720	0.44	+0.1
2,125,741	+		LRK54_RS09720	0.44	-2.3
2,125,741	+		LRK54_RS09720	0.44	+0.0
2,125,741	+		LRK54_RS09720	0.44	-0.9
2,125,741	+		LRK54_RS09720	0.44	-1.8
2,125,742	-		LRK54_RS09720	0.44	-1.3
2,125,742	-		LRK54_RS09720	0.44	-4.1
2,125,742	-		LRK54_RS09720	0.44	-0.7
2,125,742	-		LRK54_RS09720	0.44	-2.0
2,125,742	-		LRK54_RS09720	0.44	+1.7
2,125,742	-		LRK54_RS09720	0.44	-0.3
2,125,742	-		LRK54_RS09720	0.44	+0.1
2,125,742	-		LRK54_RS09720	0.44	-1.9
2,125,852	+		LRK54_RS09720	0.55	-1.1
2,125,852	+		LRK54_RS09720	0.55	-2.2
2,125,852	+		LRK54_RS09720	0.55	-1.1
2,125,852	+		LRK54_RS09720	0.55	-1.9
2,125,852	+		LRK54_RS09720	0.55	-1.3
2,125,852	+		LRK54_RS09720	0.55	-2.2
2,125,852	+		LRK54_RS09720	0.55	-0.4
2,125,852	+		LRK54_RS09720	0.55	-0.6
2,125,852	+		LRK54_RS09720	0.55	-2.8
2,125,852	+		LRK54_RS09720	0.55	-1.1
2,125,852	+		LRK54_RS09720	0.55	-1.4
2,125,852	+		LRK54_RS09720	0.55	+0.1
2,125,852	+		LRK54_RS09720	0.55	-2.7
2,125,853	-		LRK54_RS09720	0.55	-1.0
2,125,853	-		LRK54_RS09720	0.55	+0.2
2,125,853	-		LRK54_RS09720	0.55	-1.6
2,125,853	-		LRK54_RS09720	0.55	+1.7
2,125,853	-		LRK54_RS09720	0.55	-3.4
2,125,853	-		LRK54_RS09720	0.55	-0.6
2,125,853	-		LRK54_RS09720	0.55	-2.3
2,125,853	-		LRK54_RS09720	0.55	-1.9
2,125,894	+		LRK54_RS09720	0.59	-0.6
2,125,894	+		LRK54_RS09720	0.59	-1.8
2,125,894	+		LRK54_RS09720	0.59	-1.3
2,125,894	+		LRK54_RS09720	0.59	-0.3
2,125,894	+		LRK54_RS09720	0.59	-3.6
2,125,894	+		LRK54_RS09720	0.59	-3.1
2,125,894	+		LRK54_RS09720	0.59	-1.6
2,125,894	+		LRK54_RS09720	0.59	-0.5
2,125,895	-		LRK54_RS09720	0.59	+1.0
2,125,895	-		LRK54_RS09720	0.59	-2.1
2,125,895	-		LRK54_RS09720	0.59	-1.0
2,125,895	-		LRK54_RS09720	0.59	-0.5
2,125,895	-		LRK54_RS09720	0.59	-1.9
2,125,895	-		LRK54_RS09720	0.59	-2.0
2,125,895	-		LRK54_RS09720	0.59	-1.0
2,125,957	+		LRK54_RS09720	0.65	-1.1
2,125,957	+		LRK54_RS09720	0.65	-1.4
2,125,958	-		LRK54_RS09720	0.66	-1.8
2,125,958	-		LRK54_RS09720	0.66	-1.7
2,125,958	-		LRK54_RS09720	0.66	-1.3
2,125,958	-		LRK54_RS09720	0.66	-0.8
2,125,958	-		LRK54_RS09720	0.66	-2.4
2,126,143	+		LRK54_RS09720	0.84	-1.3
2,126,143	+		LRK54_RS09720	0.84	-0.6
2,126,144	-		LRK54_RS09720	0.84	-0.8
2,126,239	+				+0.7
2,126,240	-				-2.1
2,126,240	-				-2.6
2,126,308	+				-3.7
2,126,308	+				-1.9
2,126,308	+				-0.6
2,126,308	+				+1.5
2,126,308	+				-2.6
2,126,308	+				-0.4
2,126,308	+				-1.1
2,126,308	+				-2.6
2,126,308	+				-1.9
2,126,308	+				-2.4
2,126,308	+				-2.6
2,126,308	+				-0.6
2,126,308	+				-0.4
2,126,308	+				-1.3
2,126,308	+				-1.2
2,126,308	+				-0.2
2,126,308	+				-1.5
2,126,308	+				+1.7
2,126,308	+				-0.6
2,126,308	+				+0.1
2,126,308	+				-2.6
2,126,308	+				-1.9
2,126,308	+				-1.0
2,126,308	+				-1.5
2,126,308	+				+0.5
2,126,308	+				-2.4
2,126,308	+				-1.4
2,126,308	+				+0.4
2,126,309	-				+0.3
2,126,309	-				-0.9
2,126,309	-				-0.5
2,126,309	-				+0.4
2,126,309	-				+0.7
2,126,309	-				-0.6
2,126,309	-				+2.0
2,126,309	-				-0.9
2,126,309	-				+1.2
2,126,309	-				-0.1
2,126,309	-				-0.6
2,126,309	-				-1.3
2,126,309	-				-0.2
2,126,309	-				-0.6
2,126,309	-				-0.3
2,126,309	-				-0.2
2,126,309	-				+0.7
2,126,332	+				-1.1
2,126,332	+				-1.7
2,126,332	+				-1.2
2,126,332	+				-1.6
2,126,332	+				-2.5
2,126,332	+				-1.3
2,126,332	+				-3.2
2,126,332	+				-1.5
2,126,332	+				-2.9
2,126,332	+				-2.1
2,126,333	-				+0.7
2,126,333	-				+1.7
2,126,333	-				+1.1
2,126,333	-				+0.5
2,126,333	-				-1.5
2,126,333	-				+0.7
2,126,333	-				+1.9
2,126,333	-				-0.2
2,126,333	-				+0.1
2,126,333	-				-0.5
2,126,333	-				-1.3
2,126,333	-				-0.1
2,126,333	-				-0.2
2,126,333	-				+1.2
2,126,333	-				-0.6
2,126,333	-				+0.7
2,126,333	-				+0.4
2,126,333	-				-1.6
2,126,333	-				+0.7
2,126,337	+				+1.2
2,126,337	+				-0.6
2,126,337	+				+0.3
2,126,337	+				-1.2
2,126,337	+				+0.6
2,126,337	+				-1.0
2,126,337	+				-1.7
2,126,337	+				-0.0
2,126,337	+				+0.5
2,126,337	+				-2.1
2,126,337	+				+0.1
2,126,337	+				+0.2
2,126,337	+				-0.0
2,126,337	+				-0.4
2,126,337	+				-1.1
2,126,337	+				+0.8
2,126,338	-				-1.5
2,126,338	-				+0.3
2,126,338	-				-1.0
2,126,338	-				+1.4
2,126,338	-				+0.6
2,126,338	-				+0.5
2,126,338	-				+0.2
2,126,338	-				+0.2
2,126,338	-				-2.0
2,126,338	-				+1.4
2,126,338	-				-0.1
2,126,338	-				+0.7
2,126,338	-				-0.5
2,126,338	-				-0.9
2,126,338	-				-0.1
2,126,338	-				-0.3
2,126,338	-				+0.3
2,126,338	-				+0.1
2,126,339	-				-0.6
2,126,384	-				-0.5
2,126,384	-				-1.5
2,126,384	-				-1.9
2,126,567	+		LRK54_RS09725	0.63	-1.3
2,126,568	-		LRK54_RS09725	0.64	-0.0
2,126,811	+				-0.6
2,126,812	-				+0.4
2,126,812	-				+1.0
2,126,812	-				-2.2
2,126,835	+				-0.3
2,126,836	-				-0.6
2,127,165	+		LRK54_RS09730	0.55	-0.0
2,127,165	+		LRK54_RS09730	0.55	-0.4
2,127,166	-		LRK54_RS09730	0.55	-0.1