Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07775

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,689,272	+		LRK54_RS07765	0.51	-1.1
1,689,272	+		LRK54_RS07765	0.51	-1.8
1,689,272	+		LRK54_RS07765	0.51	+0.3
1,689,272	+		LRK54_RS07765	0.51	-0.8
1,689,272	+		LRK54_RS07765	0.51	-0.3
1,689,272	+		LRK54_RS07765	0.51	+1.1
1,689,272	+		LRK54_RS07765	0.51	-0.3
1,689,272	+		LRK54_RS07765	0.51	-0.2
1,689,272	+		LRK54_RS07765	0.51	+1.5
1,689,272	+		LRK54_RS07765	0.51	+0.2
1,689,272	+		LRK54_RS07765	0.51	-1.5
1,689,273	-		LRK54_RS07765	0.51	+0.7
1,689,273	-		LRK54_RS07765	0.51	-0.2
1,689,273	-		LRK54_RS07765	0.51	-0.9
1,689,273	-		LRK54_RS07765	0.51	+0.4
1,689,273	-		LRK54_RS07765	0.51	-1.5
1,689,273	-		LRK54_RS07765	0.51	-1.9
1,689,273	-		LRK54_RS07765	0.51	-1.7
1,689,273	-		LRK54_RS07765	0.51	-0.3
1,689,273	-		LRK54_RS07765	0.51	-0.1
1,689,273	-		LRK54_RS07765	0.51	-1.1
1,689,273	-		LRK54_RS07765	0.51	+0.9
1,689,273	-		LRK54_RS07765	0.51	-0.1
1,689,344	+		LRK54_RS07765	0.59	-1.3
1,689,344	+		LRK54_RS07765	0.59	-0.1
1,689,344	+		LRK54_RS07765	0.59	+1.2
1,689,344	+		LRK54_RS07765	0.59	-1.1
1,689,344	+		LRK54_RS07765	0.59	-4.0
1,689,344	+		LRK54_RS07765	0.59	-1.3
1,689,344	+		LRK54_RS07765	0.59	+0.6
1,689,344	+		LRK54_RS07765	0.59	-0.7
1,689,345	-		LRK54_RS07765	0.60	-1.3
1,689,345	-		LRK54_RS07765	0.60	+1.7
1,689,345	-		LRK54_RS07765	0.60	+0.9
1,689,345	-		LRK54_RS07765	0.60	+0.3
1,689,345	-		LRK54_RS07765	0.60	+0.1
1,689,345	-		LRK54_RS07765	0.60	-0.9
1,689,345	-		LRK54_RS07765	0.60	+0.2
1,689,345	-		LRK54_RS07765	0.60	-0.3
1,689,345	-		LRK54_RS07765	0.60	-1.4
1,689,345	-		LRK54_RS07765	0.60	+0.1
1,689,434	+		LRK54_RS07765	0.70	-0.5
1,689,434	+		LRK54_RS07765	0.70	-0.4
1,689,434	+		LRK54_RS07765	0.70	-0.9
1,689,434	+		LRK54_RS07765	0.70	+0.1
1,689,434	+		LRK54_RS07765	0.70	-2.0
1,689,434	+		LRK54_RS07765	0.70	+1.7
1,689,434	+		LRK54_RS07765	0.70	-0.3
1,689,434	+		LRK54_RS07765	0.70	-0.7
1,689,435	-		LRK54_RS07765	0.70	+3.0
1,689,435	-		LRK54_RS07765	0.70	-0.8
1,689,435	-		LRK54_RS07765	0.70	-1.1
1,689,435	-		LRK54_RS07765	0.70	-0.1
1,689,435	-		LRK54_RS07765	0.70	+1.7
1,689,435	-		LRK54_RS07765	0.70	+0.8
1,689,435	-		LRK54_RS07765	0.70	+0.1
1,689,435	-		LRK54_RS07765	0.70	+0.9
1,689,435	-		LRK54_RS07765	0.70	-1.3
1,689,435	-		LRK54_RS07765	0.70	-0.9
1,689,435	-		LRK54_RS07765	0.70	-0.7
1,689,435	-		LRK54_RS07765	0.70	-0.5
1,689,435	-		LRK54_RS07765	0.70	+0.4
1,689,435	-		LRK54_RS07765	0.70	-0.4
1,689,435	-		LRK54_RS07765	0.70	-0.6
1,689,435	-		LRK54_RS07765	0.70	+0.0
1,689,435	-		LRK54_RS07765	0.70	+0.3
1,689,530	+		LRK54_RS07765	0.81	-2.1
1,689,530	+		LRK54_RS07765	0.81	-0.8
1,689,530	+		LRK54_RS07765	0.81	-0.1
1,689,530	+		LRK54_RS07765	0.81	+0.2
1,689,530	+		LRK54_RS07765	0.81	-0.2
1,689,530	+		LRK54_RS07765	0.81	-0.9
1,689,530	+		LRK54_RS07765	0.81	+0.4
1,689,530	+		LRK54_RS07765	0.81	+0.2
1,689,530	+		LRK54_RS07765	0.81	-0.8
1,689,530	+		LRK54_RS07765	0.81	+0.9
1,689,530	+		LRK54_RS07765	0.81	+0.2
1,689,530	+		LRK54_RS07765	0.81	+0.7
1,689,531	-		LRK54_RS07765	0.81	+0.7
1,689,531	-		LRK54_RS07765	0.81	-0.2
1,689,531	-		LRK54_RS07765	0.81	-0.7
1,689,531	-		LRK54_RS07765	0.81	-0.6
1,689,531	-		LRK54_RS07765	0.81	-0.9
1,689,531	-		LRK54_RS07765	0.81	+0.7
1,689,531	-		LRK54_RS07765	0.81	+0.5
1,689,531	-		LRK54_RS07765	0.81	-0.8
1,689,531	-		LRK54_RS07765	0.81	-0.8
1,689,531	-		LRK54_RS07765	0.81	+0.5
1,689,531	-		LRK54_RS07765	0.81	-0.0
1,689,531	-		LRK54_RS07765	0.81	-1.7
1,689,531	-		LRK54_RS07765	0.81	+1.9
1,689,710	+				+0.5
1,689,711	-				-0.1
1,689,711	-				-1.9
1,689,719	+				+0.7
1,689,719	+				-0.6
1,689,719	+				-0.3
1,689,719	+				-0.8
1,689,719	+				-0.7
1,689,719	+				-1.5
1,689,719	+				-0.3
1,689,720	-				-1.1
1,689,720	-				+0.2
1,689,720	-				-1.9
1,689,720	-				-1.9
1,689,748	+				-0.2
1,689,748	+				-1.8
1,689,749	-				-0.5
1,689,749	-				-1.0
1,689,762	+				+0.1
1,689,762	+				+0.1
1,689,762	+				-0.2
1,689,762	+				-0.7
1,689,762	+				-1.6
1,689,762	+				-1.9
1,689,762	+				+0.1
1,689,762	+				-1.8
1,689,762	+				+0.4
1,689,762	+				-0.7
1,689,762	+				+0.7
1,689,762	+				+0.1
1,689,762	+				+0.5
1,689,762	+				-1.1
1,689,762	+				-1.0
1,689,762	+				+0.1
1,689,763	-				+0.5
1,689,763	-				+0.9
1,689,763	-				+0.1
1,689,763	-				-0.4
1,689,763	-				-0.6
1,689,763	-				-0.2
1,689,763	-				+0.0
1,689,763	-				+0.1
1,689,763	-				-2.0
1,689,763	-				+0.5
1,689,763	-				-0.2
1,689,763	-				-0.3
1,689,763	-				+0.7
1,689,942	-				-0.9
1,689,942	-				+0.3
1,689,942	-				+0.8
1,690,224	+				-0.7
1,690,225	-				+0.4
1,690,227	-				-0.4
1,690,242	+				-0.2
1,690,243	-				+0.0
1,690,243	-				-0.7
1,690,244	+				-0.2
1,690,244	+				-1.4
1,690,244	+				-0.1
1,690,257	-				-0.9
1,690,286	+				-2.2
1,690,525	+		LRK54_RS07775	0.56	+0.1
1,690,525	+		LRK54_RS07775	0.56	-0.9
1,690,525	+		LRK54_RS07775	0.56	-0.7
1,690,525	+		LRK54_RS07775	0.56	+0.7
1,690,525	+		LRK54_RS07775	0.56	-2.1
1,690,525	+		LRK54_RS07775	0.56	+1.3
1,690,525	+		LRK54_RS07775	0.56	-1.3
1,690,526	-		LRK54_RS07775	0.56	-2.4
1,690,526	-		LRK54_RS07775	0.56	-3.0
1,690,526	-		LRK54_RS07775	0.56	-0.1
1,690,526	-		LRK54_RS07775	0.56	+0.7
1,690,526	-		LRK54_RS07775	0.56	-1.8
1,690,526	-		LRK54_RS07775	0.56	+0.7
1,690,526	-		LRK54_RS07775	0.56	-0.3
1,690,687	+				-1.5
1,690,687	+				-0.3
1,690,687	+				-1.5
1,690,688	-				-0.2
1,690,688	-				-1.1
1,690,688	-				-0.9
1,690,688	-				-0.4
1,690,688	-				-0.9
1,690,688	-				+0.3
1,690,688	-				-0.7
1,691,142	+		LRK54_RS07780	0.27	+0.4
1,691,142	+		LRK54_RS07780	0.27	+0.6
1,691,142	+		LRK54_RS07780	0.27	-0.8
1,691,142	+		LRK54_RS07780	0.27	-0.2
1,691,142	+		LRK54_RS07780	0.27	-1.2
1,691,142	+		LRK54_RS07780	0.27	-1.1
1,691,142	+		LRK54_RS07780	0.27	-2.7
1,691,142	+		LRK54_RS07780	0.27	-0.5
1,691,142	+		LRK54_RS07780	0.27	-0.7
1,691,142	+		LRK54_RS07780	0.27	+2.0
1,691,142	+		LRK54_RS07780	0.27	+0.2
1,691,142	+		LRK54_RS07780	0.27	+0.2
1,691,142	+		LRK54_RS07780	0.27	+0.3
1,691,142	+		LRK54_RS07780	0.27	-0.5
1,691,142	+		LRK54_RS07780	0.27	+1.4
1,691,142	+		LRK54_RS07780	0.27	-0.4
1,691,142	+		LRK54_RS07780	0.27	-2.5
1,691,142	+		LRK54_RS07780	0.27	+2.5
1,691,142	+		LRK54_RS07780	0.27	+1.4
1,691,142	+		LRK54_RS07780	0.27	+0.8
1,691,142	+		LRK54_RS07780	0.27	-0.3
1,691,142	+		LRK54_RS07780	0.27	-0.1
1,691,142	+		LRK54_RS07780	0.27	+1.1
1,691,142	+		LRK54_RS07780	0.27	+0.7
1,691,142	+		LRK54_RS07780	0.27	+0.1
1,691,142	+		LRK54_RS07780	0.27	-0.4
1,691,142	+		LRK54_RS07780	0.27	+0.2
1,691,142	+		LRK54_RS07780	0.27	-0.3
1,691,142	+		LRK54_RS07780	0.27	-0.3
1,691,143	-		LRK54_RS07780	0.27	-0.7
1,691,143	-		LRK54_RS07780	0.27	+1.5
1,691,143	-		LRK54_RS07780	0.27	+0.0
1,691,143	-		LRK54_RS07780	0.27	-0.4
1,691,143	-		LRK54_RS07780	0.27	-0.2
1,691,143	-		LRK54_RS07780	0.27	-0.1
1,691,143	-		LRK54_RS07780	0.27	-0.2
1,691,143	-		LRK54_RS07780	0.27	-0.1
1,691,148	+		LRK54_RS07780	0.28	+0.1
1,691,286	+		LRK54_RS07780	0.37	+0.7
1,691,286	+		LRK54_RS07780	0.37	+0.2
1,691,286	+		LRK54_RS07780	0.37	+0.5
1,691,286	+		LRK54_RS07780	0.37	+0.3
1,691,286	+		LRK54_RS07780	0.37	+0.3
1,691,286	+		LRK54_RS07780	0.37	+0.1
1,691,287	-		LRK54_RS07780	0.37	-0.1
1,691,287	-		LRK54_RS07780	0.37	-0.2
1,691,287	-		LRK54_RS07780	0.37	+0.9
1,691,287	-		LRK54_RS07780	0.37	+0.1
1,691,287	-		LRK54_RS07780	0.37	-0.2
1,691,301	+		LRK54_RS07780	0.38	-2.1