Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05535

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS05530 and LRK54_RS05535 are separated by 18 nucleotidesLRK54_RS05535 and LRK54_RS05540 overlap by 8 nucleotides LRK54_RS05530: LRK54_RS05530 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 1,194,327 to 1,195,937 _RS05530 LRK54_RS05535: LRK54_RS05535 - glycosyltransferase family 2 protein, at 1,195,956 to 1,196,894 _RS05535 LRK54_RS05540: LRK54_RS05540 - glycosyltransferase family 2 protein, at 1,196,887 to 1,197,873 _RS05540 Position (kb) 1195 1196 1197Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1195.038 kb on + strand, within LRK54_RS05530at 1195.039 kb on - strand, within LRK54_RS05530at 1195.039 kb on - strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.056 kb on + strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.057 kb on - strand, within LRK54_RS05530at 1195.089 kb on + strand, within LRK54_RS05530at 1195.108 kb on - strand, within LRK54_RS05530at 1195.122 kb on + strand, within LRK54_RS05530at 1195.122 kb on + strand, within LRK54_RS05530at 1195.123 kb on - strand, within LRK54_RS05530at 1195.123 kb on - strand, within LRK54_RS05530at 1195.123 kb on - strand, within LRK54_RS05530at 1195.123 kb on - strand, within LRK54_RS05530at 1195.123 kb on - strand, within LRK54_RS05530at 1195.123 kb on - strand, within LRK54_RS05530at 1195.405 kb on + strand, within LRK54_RS05530at 1195.405 kb on + strand, within LRK54_RS05530at 1195.581 kb on + strand, within LRK54_RS05530at 1195.581 kb on + strandat 1195.602 kb on + strand, within LRK54_RS05530at 1195.603 kb on - strand, within LRK54_RS05530at 1195.647 kb on + strand, within LRK54_RS05530at 1195.647 kb on + strand, within LRK54_RS05530at 1195.647 kb on + strand, within LRK54_RS05530at 1195.737 kb on + strand, within LRK54_RS05530at 1195.738 kb on - strand, within LRK54_RS05530at 1195.738 kb on - strand, within LRK54_RS05530at 1195.738 kb on - strand, within LRK54_RS05530at 1195.738 kb on - strand, within LRK54_RS05530at 1195.777 kb on - strandat 1195.777 kb on - strandat 1195.777 kb on - strandat 1195.777 kb on - strandat 1195.923 kb on + strandat 1195.923 kb on + strandat 1195.923 kb on + strandat 1195.924 kb on - strandat 1195.924 kb on - strandat 1195.924 kb on - strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.935 kb on + strandat 1195.936 kb on - strandat 1195.936 kb on - strandat 1195.936 kb on - strandat 1195.936 kb on - strandat 1195.936 kb on - strandat 1195.936 kb on - strandat 1195.936 kb on - strandat 1195.936 kb on - strandat 1196.170 kb on + strand, within LRK54_RS05535at 1196.170 kb on + strand, within LRK54_RS05535at 1196.170 kb on + strand, within LRK54_RS05535at 1196.170 kb on + strand, within LRK54_RS05535at 1196.170 kb on + strand, within LRK54_RS05535at 1196.170 kb on + strand, within LRK54_RS05535at 1196.170 kb on + strand, within LRK54_RS05535at 1196.170 kb on + strand, within LRK54_RS05535at 1196.170 kb on + strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.171 kb on - strand, within LRK54_RS05535at 1196.173 kb on + strand, within LRK54_RS05535at 1196.173 kb on + strand, within LRK54_RS05535at 1196.173 kb on + strand, within LRK54_RS05535at 1196.173 kb on + strand, within LRK54_RS05535at 1196.173 kb on + strand, within LRK54_RS05535at 1196.173 kb on + strand, within LRK54_RS05535at 1196.174 kb on - strand, within LRK54_RS05535at 1196.174 kb on - strand, within LRK54_RS05535at 1196.174 kb on - strand, within LRK54_RS05535at 1196.174 kb on - strand, within LRK54_RS05535at 1196.174 kb on - strand, within LRK54_RS05535at 1196.174 kb on - strand, within LRK54_RS05535at 1196.174 kb on - strand, within LRK54_RS05535at 1196.251 kb on + strand, within LRK54_RS05535at 1196.251 kb on + strand, within LRK54_RS05535at 1196.251 kb on + strand, within LRK54_RS05535at 1196.251 kb on + strand, within LRK54_RS05535at 1196.251 kb on + strand, within LRK54_RS05535at 1196.251 kb on + strand, within LRK54_RS05535at 1196.252 kb on - strand, within LRK54_RS05535at 1196.252 kb on - strand, within LRK54_RS05535at 1196.252 kb on - strand, within LRK54_RS05535at 1196.252 kb on - strand, within LRK54_RS05535at 1196.252 kb on - strand, within LRK54_RS05535at 1196.252 kb on - strand, within LRK54_RS05535at 1196.252 kb on - strand, within LRK54_RS05535at 1196.252 kb on - strandat 1196.252 kb on - strand, within LRK54_RS05535at 1196.268 kb on + strand, within LRK54_RS05535at 1196.268 kb on + strand, within LRK54_RS05535at 1196.268 kb on + strand, within LRK54_RS05535at 1196.268 kb on + strand, within LRK54_RS05535at 1196.269 kb on - strand, within LRK54_RS05535at 1196.269 kb on - strand, within LRK54_RS05535at 1196.269 kb on - strand, within LRK54_RS05535at 1196.269 kb on - strand, within LRK54_RS05535at 1196.284 kb on + strand, within LRK54_RS05535at 1196.284 kb on + strand, within LRK54_RS05535at 1196.848 kb on + strandat 1196.848 kb on + strandat 1196.848 kb on + strandat 1196.848 kb on + strandat 1196.849 kb on - strandat 1196.849 kb on - strandat 1196.849 kb on - strandat 1196.849 kb on - strandat 1196.849 kb on - strandat 1197.225 kb on - strand, within LRK54_RS05540at 1197.574 kb on + strand, within LRK54_RS05540at 1197.574 kb on + strandat 1197.574 kb on + strand, within LRK54_RS05540at 1197.574 kb on + strand, within LRK54_RS05540at 1197.574 kb on + strand, within LRK54_RS05540at 1197.574 kb on + strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.575 kb on - strand, within LRK54_RS05540at 1197.647 kb on + strand, within LRK54_RS05540at 1197.648 kb on - strand, within LRK54_RS05540at 1197.648 kb on - strand, within LRK54_RS05540at 1197.648 kb on - strand, within LRK54_RS05540at 1197.726 kb on + strand, within LRK54_RS05540at 1197.726 kb on + strand, within LRK54_RS05540at 1197.726 kb on + strand, within LRK54_RS05540at 1197.727 kb on - strand, within LRK54_RS05540at 1197.727 kb on - strand, within LRK54_RS05540at 1197.727 kb on - strand, within LRK54_RS05540at 1197.821 kb on + strandat 1197.821 kb on + strandat 1197.821 kb on + strandat 1197.821 kb on + strandat 1197.821 kb on + strandat 1197.821 kb on + strandat 1197.822 kb on - strandat 1197.822 kb on - strandat 1197.822 kb on - strandat 1197.822 kb on - strandat 1197.822 kb on - strandat 1197.822 kb on - strandat 1197.836 kb on + strandat 1197.836 kb on + strandat 1197.836 kb on + strandat 1197.836 kb on + strandat 1197.836 kb on + strandat 1197.836 kb on + strandat 1197.836 kb on + strandat 1197.837 kb on - strandat 1197.837 kb on - strandat 1197.837 kb on - strandat 1197.837 kb on - strandat 1197.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,195,038 + LRK54_RS05530 0.44 -0.4
1,195,039 - LRK54_RS05530 0.44 -0.4
1,195,039 - LRK54_RS05530 0.44 -0.7
1,195,056 + LRK54_RS05530 0.45 +1.6
1,195,056 + LRK54_RS05530 0.45 -1.2
1,195,056 + LRK54_RS05530 0.45 -1.2
1,195,056 + LRK54_RS05530 0.45 -0.9
1,195,056 + LRK54_RS05530 0.45 +0.6
1,195,056 + LRK54_RS05530 0.45 -1.2
1,195,056 + LRK54_RS05530 0.45 -0.4
1,195,056 + LRK54_RS05530 0.45 -1.4
1,195,056 + LRK54_RS05530 0.45 +0.6
1,195,056 + LRK54_RS05530 0.45 -1.7
1,195,056 + LRK54_RS05530 0.45 +0.1
1,195,057 - LRK54_RS05530 0.45 -1.4
1,195,057 - LRK54_RS05530 0.45 +0.1
1,195,057 - LRK54_RS05530 0.45 -0.7
1,195,057 - LRK54_RS05530 0.45 -0.4
1,195,057 - LRK54_RS05530 0.45 +0.6
1,195,057 - LRK54_RS05530 0.45 -1.5
1,195,057 - LRK54_RS05530 0.45 -0.9
1,195,057 - LRK54_RS05530 0.45 -1.8
1,195,057 - LRK54_RS05530 0.45 -0.7
1,195,089 + LRK54_RS05530 0.47 -0.9
1,195,108 - LRK54_RS05530 0.48 -1.2
1,195,122 + LRK54_RS05530 0.49 +0.6
1,195,122 + LRK54_RS05530 0.49 +0.1
1,195,123 - LRK54_RS05530 0.49 -1.2
1,195,123 - LRK54_RS05530 0.49 -1.8
1,195,123 - LRK54_RS05530 0.49 -0.4
1,195,123 - LRK54_RS05530 0.49 +0.1
1,195,123 - LRK54_RS05530 0.49 +1.6
1,195,123 - LRK54_RS05530 0.49 +0.6
1,195,405 + LRK54_RS05530 0.67 -1.4
1,195,405 + LRK54_RS05530 0.67 +1.6
1,195,581 + LRK54_RS05530 0.78 -0.9
1,195,581 + +1.6
1,195,602 + LRK54_RS05530 0.79 -0.4
1,195,603 - LRK54_RS05530 0.79 +0.1
1,195,647 + LRK54_RS05530 0.82 -1.4
1,195,647 + LRK54_RS05530 0.82 -1.2
1,195,647 + LRK54_RS05530 0.82 +0.1
1,195,737 + LRK54_RS05530 0.88 -0.4
1,195,738 - LRK54_RS05530 0.88 -1.2
1,195,738 - LRK54_RS05530 0.88 -0.7
1,195,738 - LRK54_RS05530 0.88 -0.7
1,195,738 - LRK54_RS05530 0.88 +0.1
1,195,777 - +0.1
1,195,777 - +0.6
1,195,777 - -0.4
1,195,777 - -1.5
1,195,923 + -1.4
1,195,923 + +0.1
1,195,923 + -0.7
1,195,924 - -2.3
1,195,924 - +0.1
1,195,924 - -2.2
1,195,935 + -0.2
1,195,935 + +0.6
1,195,935 + -1.3
1,195,935 + -0.9
1,195,935 + -0.2
1,195,935 + +0.2
1,195,935 + +0.5
1,195,935 + -0.5
1,195,935 + +1.4
1,195,935 + +0.6
1,195,936 - +0.3
1,195,936 - -0.2
1,195,936 - -0.2
1,195,936 - -0.3
1,195,936 - -0.5
1,195,936 - +0.4
1,195,936 - +1.4
1,195,936 - -0.2
1,196,170 + LRK54_RS05535 0.23 -0.4
1,196,170 + LRK54_RS05535 0.23 -0.6
1,196,170 + LRK54_RS05535 0.23 -2.4
1,196,170 + LRK54_RS05535 0.23 +0.6
1,196,170 + LRK54_RS05535 0.23 -0.7
1,196,170 + LRK54_RS05535 0.23 +1.6
1,196,170 + LRK54_RS05535 0.23 +0.9
1,196,170 + LRK54_RS05535 0.23 -2.1
1,196,170 + LRK54_RS05535 0.23 -2.4
1,196,171 - LRK54_RS05535 0.23 -1.4
1,196,171 - LRK54_RS05535 0.23 -0.7
1,196,171 - LRK54_RS05535 0.23 -1.5
1,196,171 - LRK54_RS05535 0.23 +0.1
1,196,171 - LRK54_RS05535 0.23 -0.4
1,196,171 - LRK54_RS05535 0.23 -0.7
1,196,171 - LRK54_RS05535 0.23 -1.4
1,196,171 - LRK54_RS05535 0.23 -0.5
1,196,171 - LRK54_RS05535 0.23 +0.1
1,196,171 - LRK54_RS05535 0.23 -0.4
1,196,171 - LRK54_RS05535 0.23 -0.8
1,196,173 + LRK54_RS05535 0.23 -0.9
1,196,173 + LRK54_RS05535 0.23 -1.2
1,196,173 + LRK54_RS05535 0.23 -2.1
1,196,173 + LRK54_RS05535 0.23 -1.3
1,196,173 + LRK54_RS05535 0.23 -1.2
1,196,173 + LRK54_RS05535 0.23 -0.7
1,196,174 - LRK54_RS05535 0.23 -0.7
1,196,174 - LRK54_RS05535 0.23 +1.1
1,196,174 - LRK54_RS05535 0.23 -0.7
1,196,174 - LRK54_RS05535 0.23 -1.2
1,196,174 - LRK54_RS05535 0.23 -2.2
1,196,174 - LRK54_RS05535 0.23 +1.1
1,196,174 - LRK54_RS05535 0.23 -0.9
1,196,251 + LRK54_RS05535 0.31 -0.7
1,196,251 + LRK54_RS05535 0.31 +1.6
1,196,251 + LRK54_RS05535 0.31 -0.9
1,196,251 + LRK54_RS05535 0.31 +0.1
1,196,251 + LRK54_RS05535 0.31 -1.4
1,196,251 + LRK54_RS05535 0.31 +0.3
1,196,252 - LRK54_RS05535 0.32 +0.6
1,196,252 - LRK54_RS05535 0.32 +0.6
1,196,252 - LRK54_RS05535 0.32 -0.4
1,196,252 - LRK54_RS05535 0.32 +1.6
1,196,252 - LRK54_RS05535 0.32 +0.4
1,196,252 - LRK54_RS05535 0.32 -0.8
1,196,252 - LRK54_RS05535 0.32 +0.6
1,196,252 - +2.6
1,196,252 - LRK54_RS05535 0.32 -0.4
1,196,268 + LRK54_RS05535 0.33 +1.6
1,196,268 + LRK54_RS05535 0.33 +0.1
1,196,268 + LRK54_RS05535 0.33 -1.5
1,196,268 + LRK54_RS05535 0.33 +1.1
1,196,269 - LRK54_RS05535 0.33 -1.4
1,196,269 - LRK54_RS05535 0.33 +2.6
1,196,269 - LRK54_RS05535 0.33 +0.6
1,196,269 - LRK54_RS05535 0.33 +0.1
1,196,284 + LRK54_RS05535 0.35 +0.6
1,196,284 + LRK54_RS05535 0.35 +1.6
1,196,848 + +0.6
1,196,848 + +0.1
1,196,848 + +0.9
1,196,848 + -1.6
1,196,849 - +1.2
1,196,849 - -0.5
1,196,849 - -0.4
1,196,849 - -1.9
1,196,849 - +0.1
1,197,225 - LRK54_RS05540 0.34 +0.3
1,197,574 + LRK54_RS05540 0.70 -1.2
1,197,574 + +1.6
1,197,574 + LRK54_RS05540 0.70 -0.5
1,197,574 + LRK54_RS05540 0.70 -2.4
1,197,574 + LRK54_RS05540 0.70 -0.2
1,197,574 + LRK54_RS05540 0.70 -0.4
1,197,575 - LRK54_RS05540 0.70 -0.4
1,197,575 - LRK54_RS05540 0.70 +0.1
1,197,575 - LRK54_RS05540 0.70 -1.2
1,197,575 - LRK54_RS05540 0.70 -1.7
1,197,575 - LRK54_RS05540 0.70 -0.4
1,197,575 - LRK54_RS05540 0.70 -1.5
1,197,575 - LRK54_RS05540 0.70 +0.1
1,197,575 - LRK54_RS05540 0.70 -0.4
1,197,575 - LRK54_RS05540 0.70 +0.1
1,197,647 + LRK54_RS05540 0.77 -1.5
1,197,648 - LRK54_RS05540 0.77 +1.2
1,197,648 - LRK54_RS05540 0.77 -0.4
1,197,648 - LRK54_RS05540 0.77 +3.6
1,197,726 + LRK54_RS05540 0.85 -0.7
1,197,726 + LRK54_RS05540 0.85 -2.2
1,197,726 + LRK54_RS05540 0.85 -0.7
1,197,727 - LRK54_RS05540 0.85 -0.3
1,197,727 - LRK54_RS05540 0.85 -1.8
1,197,727 - LRK54_RS05540 0.85 +0.9
1,197,821 + -1.4
1,197,821 + +0.3
1,197,821 + -1.2
1,197,821 + -0.7
1,197,821 + -0.9
1,197,821 + -2.6
1,197,822 - -0.1
1,197,822 - -2.8
1,197,822 - -1.8
1,197,822 - +0.1
1,197,822 - -0.9
1,197,822 - +0.1
1,197,836 + -0.2
1,197,836 + +0.1
1,197,836 + +0.3
1,197,836 + -0.7
1,197,836 + -1.8
1,197,836 + -1.9
1,197,836 + +0.1
1,197,837 - +0.3
1,197,837 - -1.4
1,197,837 - -1.4
1,197,837 - +0.1
1,197,837 - +0.1

Or see this region's nucleotide sequence