Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02060 and LRK54_RS02065 overlap by 4 nucleotides LRK54_RS02065 and LRK54_RS02070 are separated by 11 nucleotides LRK54_RS02070 and LRK54_RS02075 are separated by 150 nucleotides
LRK54_RS02060: LRK54_RS02060 - hypothetical protein, at 436,359 to 436,841
_RS02060
LRK54_RS02065: LRK54_RS02065 - GNAT family N-acetyltransferase, at 436,838 to 437,380
_RS02065
LRK54_RS02070: LRK54_RS02070 - acyl-CoA dehydrogenase family protein, at 437,392 to 438,561
_RS02070
LRK54_RS02075: LRK54_RS02075 - DMT family transporter, at 438,712 to 439,587
_RS02075
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 436.816 kb on + strand at 436.816 kb on + strand at 436.817 kb on - strand at 436.817 kb on - strand at 436.817 kb on - strand at 436.817 kb on - strand at 436.903 kb on - strand, within LRK54_RS02065 at 436.903 kb on - strand, within LRK54_RS02065 at 437.061 kb on + strand, within LRK54_RS02065 at 437.061 kb on + strand, within LRK54_RS02065 at 437.061 kb on + strand, within LRK54_RS02065 at 437.061 kb on + strand, within LRK54_RS02065 at 437.061 kb on + strand, within LRK54_RS02065 at 437.061 kb on + strand, within LRK54_RS02065 at 437.061 kb on + strand, within LRK54_RS02065 at 437.061 kb on + strand, within LRK54_RS02065 at 437.062 kb on - strand, within LRK54_RS02065 at 437.062 kb on - strand, within LRK54_RS02065 at 437.062 kb on - strand, within LRK54_RS02065 at 437.062 kb on - strand, within LRK54_RS02065 at 437.062 kb on - strand, within LRK54_RS02065 at 437.062 kb on - strand, within LRK54_RS02065 at 437.304 kb on + strand, within LRK54_RS02065 at 437.304 kb on + strand, within LRK54_RS02065 at 437.304 kb on + strand, within LRK54_RS02065 at 437.305 kb on - strand, within LRK54_RS02065 at 437.459 kb on + strand at 437.459 kb on + strand at 437.459 kb on + strand at 437.459 kb on + strand at 437.459 kb on + strand at 437.459 kb on + strand at 437.459 kb on + strand at 437.459 kb on + strand at 437.459 kb on + strand at 437.460 kb on - strand at 437.460 kb on - strand at 437.460 kb on - strand at 437.460 kb on - strand at 437.460 kb on - strand at 437.460 kb on - strand at 437.460 kb on - strand at 437.753 kb on + strand, within LRK54_RS02070 at 437.753 kb on + strand, within LRK54_RS02070 at 437.753 kb on + strand, within LRK54_RS02070 at 437.753 kb on + strand, within LRK54_RS02070 at 437.753 kb on + strand, within LRK54_RS02070 at 438.197 kb on + strand, within LRK54_RS02070 at 438.197 kb on + strand, within LRK54_RS02070 at 438.198 kb on - strand, within LRK54_RS02070 at 438.198 kb on - strand, within LRK54_RS02070 at 438.198 kb on - strand, within LRK54_RS02070 at 438.198 kb on - strand, within LRK54_RS02070 at 438.198 kb on - strand, within LRK54_RS02070 at 438.198 kb on - strand, within LRK54_RS02070 at 438.224 kb on + strand, within LRK54_RS02070 at 438.230 kb on + strand, within LRK54_RS02070 at 438.230 kb on + strand, within LRK54_RS02070 at 438.230 kb on + strand, within LRK54_RS02070 at 438.230 kb on + strand, within LRK54_RS02070 at 438.231 kb on - strand at 438.231 kb on - strand, within LRK54_RS02070 at 438.231 kb on - strand, within LRK54_RS02070 at 438.231 kb on - strand, within LRK54_RS02070 at 438.231 kb on - strand, within LRK54_RS02070 at 438.231 kb on - strand, within LRK54_RS02070 at 438.231 kb on - strand, within LRK54_RS02070 at 438.231 kb on - strand, within LRK54_RS02070 at 438.231 kb on - strand, within LRK54_RS02070 at 438.239 kb on + strand, within LRK54_RS02070 at 438.239 kb on + strand, within LRK54_RS02070 at 438.239 kb on + strand, within LRK54_RS02070 at 438.240 kb on - strand, within LRK54_RS02070 at 438.240 kb on - strand, within LRK54_RS02070 at 438.240 kb on - strand, within LRK54_RS02070 at 438.320 kb on + strand, within LRK54_RS02070 at 438.321 kb on - strand, within LRK54_RS02070 at 438.321 kb on - strand, within LRK54_RS02070 at 438.350 kb on + strand, within LRK54_RS02070 at 438.350 kb on + strand, within LRK54_RS02070 at 438.350 kb on + strand, within LRK54_RS02070 at 438.351 kb on - strand, within LRK54_RS02070 at 438.351 kb on - strand, within LRK54_RS02070 at 438.351 kb on - strand, within LRK54_RS02070 at 438.351 kb on - strand, within LRK54_RS02070 at 438.351 kb on - strand, within LRK54_RS02070 at 438.351 kb on - strand, within LRK54_RS02070 at 438.530 kb on + strand at 438.531 kb on - strand at 438.531 kb on - strand at 438.531 kb on - strand at 438.583 kb on + strand at 438.584 kb on - strand at 438.584 kb on - strand at 438.584 kb on - strand at 438.584 kb on - strand at 438.584 kb on - strand at 438.594 kb on - strand at 438.598 kb on + strand at 438.599 kb on - strand at 438.599 kb on - strand at 438.599 kb on - strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.608 kb on + strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.609 kb on - strand at 438.646 kb on + strand at 438.646 kb on + strand at 438.647 kb on - strand at 438.647 kb on - strand at 438.647 kb on - strand at 438.647 kb on - strand at 438.754 kb on + strand at 438.754 kb on + strand at 438.755 kb on - strand at 438.805 kb on + strand, within LRK54_RS02075 at 438.806 kb on - strand, within LRK54_RS02075 at 438.806 kb on - strand, within LRK54_RS02075 at 438.806 kb on - strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.240 kb on + strand, within LRK54_RS02075 at 439.241 kb on - strand, within LRK54_RS02075 at 439.241 kb on - strand, within LRK54_RS02075 at 439.241 kb on - strand, within LRK54_RS02075 at 439.241 kb on - strand, within LRK54_RS02075 at 439.241 kb on - strand, within LRK54_RS02075 at 439.423 kb on + strand, within LRK54_RS02075 at 439.423 kb on + strand, within LRK54_RS02075 at 439.423 kb on + strand, within LRK54_RS02075 at 439.423 kb on + strand, within LRK54_RS02075 at 439.423 kb on + strand, within LRK54_RS02075 at 439.424 kb on - strand, within LRK54_RS02075 at 439.424 kb on - strand, within LRK54_RS02075 at 439.424 kb on - strand, within LRK54_RS02075 at 439.456 kb on + strand, within LRK54_RS02075 at 439.456 kb on + strand, within LRK54_RS02075 at 439.456 kb on + strand, within LRK54_RS02075 at 439.456 kb on + strand, within LRK54_RS02075 at 439.456 kb on + strand, within LRK54_RS02075 at 439.457 kb on - strand, within LRK54_RS02075
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 436,816 + -1.4 436,816 + -0.2 436,817 - +0.3 436,817 - -0.8 436,817 - -1.5 436,817 - -0.7 436,903 - LRK54_RS02065 0.12 +0.6 436,903 - LRK54_RS02065 0.12 +0.4 437,061 + LRK54_RS02065 0.41 -2.1 437,061 + LRK54_RS02065 0.41 -1.9 437,061 + LRK54_RS02065 0.41 +0.2 437,061 + LRK54_RS02065 0.41 +0.2 437,061 + LRK54_RS02065 0.41 -3.6 437,061 + LRK54_RS02065 0.41 -1.4 437,061 + LRK54_RS02065 0.41 -1.5 437,061 + LRK54_RS02065 0.41 -1.4 437,062 - LRK54_RS02065 0.41 -0.0 437,062 - LRK54_RS02065 0.41 +1.7 437,062 - LRK54_RS02065 0.41 +1.6 437,062 - LRK54_RS02065 0.41 -1.9 437,062 - LRK54_RS02065 0.41 -0.5 437,062 - LRK54_RS02065 0.41 -0.5 437,304 + LRK54_RS02065 0.86 -3.3 437,304 + LRK54_RS02065 0.86 -0.2 437,304 + LRK54_RS02065 0.86 -2.1 437,305 - LRK54_RS02065 0.86 -0.2 437,459 + -0.2 437,459 + +0.2 437,459 + -0.5 437,459 + -0.2 437,459 + +1.8 437,459 + +1.8 437,459 + +0.8 437,459 + -0.8 437,459 + +0.8 437,460 - +1.8 437,460 - +0.2 437,460 - +0.2 437,460 - -0.2 437,460 - -0.5 437,460 - +0.8 437,460 - -1.2 437,753 + LRK54_RS02070 0.31 -1.4 437,753 + LRK54_RS02070 0.31 -0.5 437,753 + LRK54_RS02070 0.31 -1.0 437,753 + LRK54_RS02070 0.31 +0.8 437,753 + LRK54_RS02070 0.31 -1.4 438,197 + LRK54_RS02070 0.69 +0.5 438,197 + LRK54_RS02070 0.69 -0.2 438,198 - LRK54_RS02070 0.69 -1.5 438,198 - LRK54_RS02070 0.69 -2.1 438,198 - LRK54_RS02070 0.69 -0.5 438,198 - LRK54_RS02070 0.69 -0.5 438,198 - LRK54_RS02070 0.69 -1.0 438,198 - LRK54_RS02070 0.69 -1.5 438,224 + LRK54_RS02070 0.71 -0.2 438,230 + LRK54_RS02070 0.72 +1.8 438,230 + LRK54_RS02070 0.72 +0.8 438,230 + LRK54_RS02070 0.72 -1.7 438,230 + LRK54_RS02070 0.72 +1.8 438,231 - +0.8 438,231 - LRK54_RS02070 0.72 +0.2 438,231 - LRK54_RS02070 0.72 -2.3 438,231 - LRK54_RS02070 0.72 -0.5 438,231 - LRK54_RS02070 0.72 -1.2 438,231 - LRK54_RS02070 0.72 +0.8 438,231 - LRK54_RS02070 0.72 +0.2 438,231 - LRK54_RS02070 0.72 -0.5 438,231 - LRK54_RS02070 0.72 -0.2 438,239 + LRK54_RS02070 0.72 -1.9 438,239 + LRK54_RS02070 0.72 -0.2 438,239 + LRK54_RS02070 0.72 +1.8 438,240 - LRK54_RS02070 0.72 -0.5 438,240 - LRK54_RS02070 0.72 -0.2 438,240 - LRK54_RS02070 0.72 +0.8 438,320 + LRK54_RS02070 0.79 +0.8 438,321 - LRK54_RS02070 0.79 -0.5 438,321 - LRK54_RS02070 0.79 -0.8 438,350 + LRK54_RS02070 0.82 +0.2 438,350 + LRK54_RS02070 0.82 -0.2 438,350 + LRK54_RS02070 0.82 -0.8 438,351 - LRK54_RS02070 0.82 +0.8 438,351 - LRK54_RS02070 0.82 +0.8 438,351 - LRK54_RS02070 0.82 -0.2 438,351 - LRK54_RS02070 0.82 +0.2 438,351 - LRK54_RS02070 0.82 +0.8 438,351 - LRK54_RS02070 0.82 -0.2 438,530 + +0.2 438,531 - -0.5 438,531 - -1.2 438,531 - -0.5 438,583 + -2.0 438,584 - -1.5 438,584 - -2.3 438,584 - -0.2 438,584 - +0.2 438,584 - +0.5 438,594 - +1.1 438,598 + -0.8 438,599 - -0.1 438,599 - -0.4 438,599 - -1.0 438,608 + +0.5 438,608 + -0.4 438,608 + +1.4 438,608 + +1.2 438,608 + +1.8 438,608 + -0.4 438,608 + -0.1 438,608 + -0.9 438,608 + -0.8 438,608 + -1.4 438,609 - -1.0 438,609 - +0.2 438,609 - +1.1 438,609 - -0.3 438,609 - -1.7 438,609 - +2.2 438,609 - +0.5 438,609 - +1.8 438,609 - +0.6 438,609 - +0.4 438,609 - -0.4 438,646 + +1.8 438,646 + -0.2 438,647 - -0.4 438,647 - -0.2 438,647 - +0.6 438,647 - +0.1 438,754 + -1.0 438,754 + -0.2 438,755 - -0.4 438,805 + LRK54_RS02075 0.11 +0.5 438,806 - LRK54_RS02075 0.11 +0.1 438,806 - LRK54_RS02075 0.11 -0.6 438,806 - LRK54_RS02075 0.11 +0.2 439,240 + LRK54_RS02075 0.60 -0.1 439,240 + LRK54_RS02075 0.60 +0.8 439,240 + LRK54_RS02075 0.60 -0.2 439,240 + LRK54_RS02075 0.60 -0.4 439,240 + LRK54_RS02075 0.60 +0.1 439,240 + LRK54_RS02075 0.60 -1.2 439,240 + LRK54_RS02075 0.60 +0.5 439,240 + LRK54_RS02075 0.60 +0.7 439,240 + LRK54_RS02075 0.60 +0.5 439,241 - LRK54_RS02075 0.60 -0.4 439,241 - LRK54_RS02075 0.60 -1.4 439,241 - LRK54_RS02075 0.60 -0.3 439,241 - LRK54_RS02075 0.60 -0.2 439,241 - LRK54_RS02075 0.60 -0.7 439,423 + LRK54_RS02075 0.81 +0.2 439,423 + LRK54_RS02075 0.81 +0.6 439,423 + LRK54_RS02075 0.81 +0.4 439,423 + LRK54_RS02075 0.81 +0.7 439,423 + LRK54_RS02075 0.81 -1.2 439,424 - LRK54_RS02075 0.81 -0.7 439,424 - LRK54_RS02075 0.81 +0.1 439,424 - LRK54_RS02075 0.81 +0.3 439,456 + LRK54_RS02075 0.85 +1.8 439,456 + LRK54_RS02075 0.85 +1.4 439,456 + LRK54_RS02075 0.85 -1.7 439,456 + LRK54_RS02075 0.85 -0.8 439,456 + LRK54_RS02075 0.85 -2.6 439,457 - LRK54_RS02075 0.85 -0.8
Or see this region's nucleotide sequence