Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3060

Experiment: LB, pH5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3059 and Ac3H11_3060 are separated by 137 nucleotidesAc3H11_3060 and Ac3H11_3061 are separated by 105 nucleotidesAc3H11_3061 and Ac3H11_3062 are separated by 136 nucleotides Ac3H11_3059 - Glycine cleavage system transcriptional activator, at 83,975 to 84,976 _3059 Ac3H11_3060 - hypothetical protein, at 85,114 to 85,689 _3060 Ac3H11_3061 - hypothetical protein, at 85,795 to 86,187 _3061 Ac3H11_3062 - transcriptional regulator, TetR family, at 86,324 to 87,013 _3062 Position (kb) 85 86Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 84.120 kb on + strand, within Ac3H11_3059at 84.120 kb on + strand, within Ac3H11_3059at 84.120 kb on + strand, within Ac3H11_3059at 84.121 kb on - strand, within Ac3H11_3059at 84.258 kb on + strand, within Ac3H11_3059at 84.258 kb on + strand, within Ac3H11_3059at 84.258 kb on + strand, within Ac3H11_3059at 84.258 kb on + strand, within Ac3H11_3059at 84.258 kb on + strand, within Ac3H11_3059at 84.258 kb on + strand, within Ac3H11_3059at 84.259 kb on - strand, within Ac3H11_3059at 84.259 kb on - strand, within Ac3H11_3059at 84.259 kb on - strand, within Ac3H11_3059at 84.259 kb on - strand, within Ac3H11_3059at 84.259 kb on - strand, within Ac3H11_3059at 84.267 kb on + strand, within Ac3H11_3059at 84.267 kb on + strand, within Ac3H11_3059at 84.267 kb on + strand, within Ac3H11_3059at 84.267 kb on - strand, within Ac3H11_3059at 84.268 kb on - strand, within Ac3H11_3059at 84.268 kb on - strand, within Ac3H11_3059at 84.268 kb on - strand, within Ac3H11_3059at 84.268 kb on - strand, within Ac3H11_3059at 84.268 kb on - strand, within Ac3H11_3059at 84.268 kb on - strand, within Ac3H11_3059at 84.333 kb on + strand, within Ac3H11_3059at 84.333 kb on + strand, within Ac3H11_3059at 84.333 kb on + strand, within Ac3H11_3059at 84.333 kb on + strand, within Ac3H11_3059at 84.333 kb on + strand, within Ac3H11_3059at 84.333 kb on + strand, within Ac3H11_3059at 84.333 kb on + strand, within Ac3H11_3059at 84.334 kb on - strand, within Ac3H11_3059at 84.334 kb on - strand, within Ac3H11_3059at 84.334 kb on - strand, within Ac3H11_3059at 84.334 kb on - strand, within Ac3H11_3059at 84.342 kb on + strand, within Ac3H11_3059at 84.342 kb on + strand, within Ac3H11_3059at 84.342 kb on + strand, within Ac3H11_3059at 84.342 kb on + strand, within Ac3H11_3059at 84.342 kb on + strand, within Ac3H11_3059at 84.343 kb on - strand, within Ac3H11_3059at 84.343 kb on - strand, within Ac3H11_3059at 84.343 kb on - strand, within Ac3H11_3059at 84.343 kb on - strand, within Ac3H11_3059at 84.507 kb on + strand, within Ac3H11_3059at 84.507 kb on + strand, within Ac3H11_3059at 84.507 kb on + strand, within Ac3H11_3059at 84.508 kb on - strand, within Ac3H11_3059at 85.023 kb on - strandat 85.067 kb on + strandat 85.067 kb on + strandat 85.067 kb on + strandat 85.067 kb on + strandat 85.067 kb on + strandat 85.067 kb on + strandat 85.067 kb on + strandat 85.067 kb on + strandat 85.067 kb on + strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.068 kb on - strandat 85.092 kb on + strandat 85.101 kb on + strandat 85.101 kb on + strandat 85.101 kb on + strandat 85.101 kb on + strandat 85.101 kb on + strandat 85.102 kb on - strandat 85.293 kb on + strand, within Ac3H11_3060at 85.747 kb on + strandat 85.747 kb on + strandat 85.747 kb on + strandat 85.747 kb on + strandat 85.762 kb on + strandat 85.762 kb on + strandat 85.762 kb on + strandat 85.762 kb on + strandat 85.763 kb on - strandat 85.763 kb on - strandat 85.763 kb on - strandat 85.763 kb on - strandat 85.763 kb on - strandat 85.763 kb on - strandat 85.763 kb on - strandat 85.763 kb on - strandat 86.075 kb on - strand, within Ac3H11_3061at 86.075 kb on - strand, within Ac3H11_3061at 86.279 kb on + strandat 86.279 kb on + strandat 86.279 kb on + strandat 86.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH5
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84,120 + Ac3H11_3059 0.14 +0.3
84,120 + Ac3H11_3059 0.14 +0.2
84,120 + Ac3H11_3059 0.14 +0.6
84,121 - Ac3H11_3059 0.15 +0.6
84,258 + Ac3H11_3059 0.28 +0.3
84,258 + Ac3H11_3059 0.28 -0.1
84,258 + Ac3H11_3059 0.28 +0.0
84,258 + Ac3H11_3059 0.28 +0.2
84,258 + Ac3H11_3059 0.28 -1.2
84,258 + Ac3H11_3059 0.28 -0.6
84,259 - Ac3H11_3059 0.28 +0.8
84,259 - Ac3H11_3059 0.28 +0.5
84,259 - Ac3H11_3059 0.28 -0.1
84,259 - Ac3H11_3059 0.28 +0.2
84,259 - Ac3H11_3059 0.28 -0.9
84,267 + Ac3H11_3059 0.29 +0.6
84,267 + Ac3H11_3059 0.29 +1.0
84,267 + Ac3H11_3059 0.29 +0.3
84,267 - Ac3H11_3059 0.29 -0.7
84,268 - Ac3H11_3059 0.29 +0.5
84,268 - Ac3H11_3059 0.29 +0.3
84,268 - Ac3H11_3059 0.29 +1.3
84,268 - Ac3H11_3059 0.29 +0.4
84,268 - Ac3H11_3059 0.29 +0.1
84,268 - Ac3H11_3059 0.29 -0.6
84,333 + Ac3H11_3059 0.36 +0.2
84,333 + Ac3H11_3059 0.36 +0.3
84,333 + Ac3H11_3059 0.36 -0.3
84,333 + Ac3H11_3059 0.36 +0.0
84,333 + Ac3H11_3059 0.36 +0.3
84,333 + Ac3H11_3059 0.36 +0.4
84,333 + Ac3H11_3059 0.36 +0.1
84,334 - Ac3H11_3059 0.36 -0.1
84,334 - Ac3H11_3059 0.36 -0.3
84,334 - Ac3H11_3059 0.36 +0.1
84,334 - Ac3H11_3059 0.36 +1.1
84,342 + Ac3H11_3059 0.37 +0.0
84,342 + Ac3H11_3059 0.37 +0.1
84,342 + Ac3H11_3059 0.37 -0.4
84,342 + Ac3H11_3059 0.37 +0.2
84,342 + Ac3H11_3059 0.37 +0.9
84,343 - Ac3H11_3059 0.37 +0.1
84,343 - Ac3H11_3059 0.37 -0.0
84,343 - Ac3H11_3059 0.37 -0.0
84,343 - Ac3H11_3059 0.37 -0.3
84,507 + Ac3H11_3059 0.53 +1.8
84,507 + Ac3H11_3059 0.53 +1.5
84,507 + Ac3H11_3059 0.53 +0.8
84,508 - Ac3H11_3059 0.53 +0.9
85,023 - -2.9
85,067 + +0.1
85,067 + +0.6
85,067 + +0.0
85,067 + +0.9
85,067 + +0.0
85,067 + +0.9
85,067 + -0.3
85,067 + +0.2
85,067 + +0.1
85,068 - -1.6
85,068 - +0.7
85,068 - +0.2
85,068 - -0.3
85,068 - +0.0
85,068 - -0.1
85,068 - -1.1
85,068 - +0.2
85,068 - +1.2
85,068 - +1.3
85,068 - -0.5
85,068 - +0.7
85,068 - -0.8
85,068 - +0.3
85,068 - +0.8
85,068 - -1.5
85,068 - +0.6
85,068 - -0.4
85,068 - +0.1
85,068 - +1.9
85,068 - -0.5
85,092 + -0.7
85,101 + +0.6
85,101 + -0.2
85,101 + -1.6
85,101 + +0.2
85,101 + -0.0
85,102 - -0.6
85,293 + Ac3H11_3060 0.31 +0.5
85,747 + +0.4
85,747 + -0.5
85,747 + +1.4
85,747 + -0.9
85,762 + -0.1
85,762 + +0.2
85,762 + -0.7
85,762 + -0.4
85,763 - -0.4
85,763 - -0.0
85,763 - +1.2
85,763 - +1.0
85,763 - -1.2
85,763 - -0.2
85,763 - -1.2
85,763 - -0.0
86,075 - Ac3H11_3061 0.71 -1.5
86,075 - Ac3H11_3061 0.71 +2.5
86,279 + +0.3
86,279 + +0.0
86,279 + -0.8
86,280 - -0.4

Or see this region's nucleotide sequence