Experiment: LB, pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1965 and Ac3H11_1966 are separated by 234 nucleotides Ac3H11_1966 and Ac3H11_1967 overlap by 4 nucleotides Ac3H11_1967 and Ac3H11_1968 overlap by 4 nucleotides
Ac3H11_1965 - Heat shock protease, at 177,346 to 178,224
_1965
Ac3H11_1966 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 178,459 to 180,033
_1966
Ac3H11_1967 - hypothetical protein, at 180,030 to 180,197
_1967
Ac3H11_1968 - Transcriptional regulator, AraC family, at 180,194 to 181,225
_1968
Position (kb) 178
179
180
181 Strain fitness (log2 ratio) -1
0
1
2 at 177.935 kb on - strand, within Ac3H11_1965 at 177.937 kb on + strand, within Ac3H11_1965 at 177.937 kb on + strand, within Ac3H11_1965 at 177.937 kb on + strand, within Ac3H11_1965 at 177.937 kb on + strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 178.222 kb on + strand at 178.223 kb on - strand at 178.360 kb on + strand at 178.374 kb on + strand at 178.375 kb on - strand at 178.375 kb on - strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.859 kb on + strand, within Ac3H11_1966 at 178.859 kb on + strand, within Ac3H11_1966 at 178.860 kb on - strand, within Ac3H11_1966 at 178.860 kb on - strand, within Ac3H11_1966 at 178.860 kb on - strand, within Ac3H11_1966 at 178.933 kb on + strand, within Ac3H11_1966 at 178.933 kb on + strand, within Ac3H11_1966 at 178.934 kb on - strand, within Ac3H11_1966 at 178.934 kb on - strand, within Ac3H11_1966 at 178.934 kb on - strand, within Ac3H11_1966 at 178.934 kb on - strand, within Ac3H11_1966 at 178.963 kb on + strand, within Ac3H11_1966 at 179.143 kb on - strand, within Ac3H11_1966 at 180.031 kb on + strand at 180.032 kb on - strand at 180.032 kb on - strand at 180.032 kb on - strand at 180.060 kb on + strand, within Ac3H11_1967 at 180.060 kb on + strand, within Ac3H11_1967 at 180.061 kb on - strand, within Ac3H11_1967 at 180.061 kb on - strand, within Ac3H11_1967 at 180.061 kb on - strand, within Ac3H11_1967 at 180.276 kb on + strand at 180.316 kb on - strand, within Ac3H11_1968 at 180.350 kb on + strand, within Ac3H11_1968 at 180.350 kb on + strand, within Ac3H11_1968 at 180.351 kb on - strand, within Ac3H11_1968 at 180.351 kb on - strand, within Ac3H11_1968 at 180.796 kb on - strand, within Ac3H11_1968
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH5 remove 177,935 - Ac3H11_1965 0.67 +0.4 177,937 + Ac3H11_1965 0.67 +0.2 177,937 + Ac3H11_1965 0.67 -0.3 177,937 + Ac3H11_1965 0.67 -0.4 177,937 + Ac3H11_1965 0.67 +1.1 177,938 - Ac3H11_1965 0.67 +0.1 177,938 - Ac3H11_1965 0.67 -0.0 177,938 - Ac3H11_1965 0.67 -0.0 177,938 - Ac3H11_1965 0.67 +0.5 177,938 - Ac3H11_1965 0.67 -1.3 177,938 - Ac3H11_1965 0.67 -0.3 177,938 - Ac3H11_1965 0.67 +1.2 178,222 + +0.7 178,223 - +0.3 178,360 + -0.4 178,374 + -0.5 178,375 - +1.0 178,375 - -0.5 178,458 + -0.3 178,458 + -0.5 178,458 + +0.0 178,458 + +0.3 178,458 + -0.2 178,458 + -0.0 178,459 - +0.1 178,459 - -1.1 178,459 - +0.5 178,459 - -1.0 178,459 - -0.2 178,459 - -0.1 178,459 - -0.1 178,459 - -0.5 178,459 - +1.0 178,859 + Ac3H11_1966 0.25 -0.1 178,859 + Ac3H11_1966 0.25 -0.7 178,860 - Ac3H11_1966 0.25 -0.3 178,860 - Ac3H11_1966 0.25 -0.1 178,860 - Ac3H11_1966 0.25 +0.1 178,933 + Ac3H11_1966 0.30 -0.6 178,933 + Ac3H11_1966 0.30 +0.1 178,934 - Ac3H11_1966 0.30 -0.7 178,934 - Ac3H11_1966 0.30 -0.5 178,934 - Ac3H11_1966 0.30 +0.0 178,934 - Ac3H11_1966 0.30 -0.3 178,963 + Ac3H11_1966 0.32 +1.8 179,143 - Ac3H11_1966 0.43 -0.9 180,031 + +0.5 180,032 - -0.2 180,032 - -0.1 180,032 - -0.7 180,060 + Ac3H11_1967 0.18 +0.7 180,060 + Ac3H11_1967 0.18 +0.1 180,061 - Ac3H11_1967 0.18 +1.2 180,061 - Ac3H11_1967 0.18 +0.6 180,061 - Ac3H11_1967 0.18 +0.4 180,276 + +1.0 180,316 - Ac3H11_1968 0.12 +0.2 180,350 + Ac3H11_1968 0.15 -0.5 180,350 + Ac3H11_1968 0.15 +0.4 180,351 - Ac3H11_1968 0.15 -0.4 180,351 - Ac3H11_1968 0.15 +0.1 180,796 - Ac3H11_1968 0.58 +0.0
Or see this region's nucleotide sequence