Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.922.1 and Xcc-8004.923.1 overlap by 4 nucleotides Xcc-8004.923.1 and Xcc-8004.924.1 are separated by 125 nucleotides Xcc-8004.924.1 and Xcc-8004.925.1 are separated by 83 nucleotides
Xcc-8004.922.1: Xcc-8004.922.1 - FIG01210252: hypothetical protein, at 865,912 to 866,976
Xcc-8004.922.1
Xcc-8004.923.1: Xcc-8004.923.1 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 866,973 to 867,836
Xcc-8004.923.1
Xcc-8004.924.1: Xcc-8004.924.1 - FIG01200701: possible membrane protein, at 867,962 to 868,339
Xcc-8004.924.1
Xcc-8004.925.1: Xcc-8004.925.1 - FIG01210026: hypothetical protein, at 868,423 to 869,817
Xcc-8004.925.1
Position (kb) 867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 867.046 kb on + strand at 867.046 kb on + strand at 867.047 kb on - strand at 867.047 kb on - strand at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.247 kb on - strand, within Xcc-8004.923.1 at 867.247 kb on - strand, within Xcc-8004.923.1 at 867.402 kb on + strand, within Xcc-8004.923.1 at 867.402 kb on + strand, within Xcc-8004.923.1 at 867.403 kb on - strand, within Xcc-8004.923.1 at 867.534 kb on + strand, within Xcc-8004.923.1 at 867.534 kb on + strand, within Xcc-8004.923.1 at 867.534 kb on + strand, within Xcc-8004.923.1 at 867.535 kb on - strand, within Xcc-8004.923.1 at 867.535 kb on - strand, within Xcc-8004.923.1 at 867.535 kb on - strand, within Xcc-8004.923.1 at 867.535 kb on - strand, within Xcc-8004.923.1 at 867.564 kb on + strand, within Xcc-8004.923.1 at 867.564 kb on + strand, within Xcc-8004.923.1 at 867.891 kb on + strand at 867.891 kb on + strand at 867.892 kb on - strand at 867.892 kb on - strand at 867.892 kb on - strand at 867.892 kb on - strand at 867.905 kb on + strand at 867.905 kb on + strand at 867.906 kb on - strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.959 kb on - strand at 867.959 kb on - strand at 867.959 kb on - strand at 867.959 kb on - strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 868.040 kb on + strand, within Xcc-8004.924.1 at 868.055 kb on + strand, within Xcc-8004.924.1 at 868.411 kb on + strand at 868.411 kb on + strand at 868.411 kb on + strand at 868.412 kb on - strand at 868.412 kb on - strand at 868.412 kb on - strand at 868.412 kb on - strand at 868.689 kb on + strand, within Xcc-8004.925.1 at 868.689 kb on + strand, within Xcc-8004.925.1 at 868.689 kb on + strand, within Xcc-8004.925.1 at 868.689 kb on + strand, within Xcc-8004.925.1 at 868.819 kb on + strand, within Xcc-8004.925.1 at 868.978 kb on + strand, within Xcc-8004.925.1 at 868.979 kb on - strand, within Xcc-8004.925.1 at 869.020 kb on + strand, within Xcc-8004.925.1 at 869.021 kb on - strand, within Xcc-8004.925.1 at 869.021 kb on - strand, within Xcc-8004.925.1 at 869.093 kb on - strand, within Xcc-8004.925.1 at 869.093 kb on - strand, within Xcc-8004.925.1 at 869.112 kb on + strand, within Xcc-8004.925.1 at 869.299 kb on + strand, within Xcc-8004.925.1 at 869.299 kb on + strand, within Xcc-8004.925.1 at 869.300 kb on - strand, within Xcc-8004.925.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 867,046 + +0.2 867,046 + -0.2 867,047 - +0.2 867,047 - +0.0 867,175 - Xcc-8004.923.1 0.23 +0.4 867,175 - Xcc-8004.923.1 0.23 -1.3 867,175 - Xcc-8004.923.1 0.23 -1.0 867,175 - Xcc-8004.923.1 0.23 +0.7 867,175 - Xcc-8004.923.1 0.23 -0.7 867,175 - Xcc-8004.923.1 0.23 +0.0 867,175 - Xcc-8004.923.1 0.23 -0.1 867,247 - Xcc-8004.923.1 0.32 -0.9 867,247 - Xcc-8004.923.1 0.32 +1.0 867,402 + Xcc-8004.923.1 0.50 -1.3 867,402 + Xcc-8004.923.1 0.50 +0.4 867,403 - Xcc-8004.923.1 0.50 -0.6 867,534 + Xcc-8004.923.1 0.65 +0.8 867,534 + Xcc-8004.923.1 0.65 -0.4 867,534 + Xcc-8004.923.1 0.65 -0.9 867,535 - Xcc-8004.923.1 0.65 +0.0 867,535 - Xcc-8004.923.1 0.65 +0.3 867,535 - Xcc-8004.923.1 0.65 +1.4 867,535 - Xcc-8004.923.1 0.65 -1.8 867,564 + Xcc-8004.923.1 0.68 +1.5 867,564 + Xcc-8004.923.1 0.68 -0.1 867,891 + -3.3 867,891 + +0.9 867,892 - -1.3 867,892 - +0.3 867,892 - -2.1 867,892 - -0.3 867,905 + +0.2 867,905 + -0.2 867,906 - -0.6 867,958 + -2.3 867,958 + +1.6 867,958 + +0.2 867,958 + -0.2 867,958 + +1.4 867,958 + +0.0 867,958 + +0.3 867,958 + +1.0 867,959 - +0.2 867,959 - +0.3 867,959 - -0.0 867,959 - -0.2 867,988 + -1.1 867,988 + +0.0 867,988 + -0.2 867,988 + -2.0 867,988 + -1.6 867,988 + -2.3 867,989 - +1.0 867,989 - -1.0 867,989 - -2.1 867,989 - +0.9 867,989 - +0.2 867,989 - +0.0 867,989 - +1.0 867,989 - +0.3 867,989 - -0.2 867,989 - -0.1 867,989 - +1.6 868,040 + Xcc-8004.924.1 0.21 +1.3 868,055 + Xcc-8004.924.1 0.25 +0.0 868,411 + +1.0 868,411 + -0.7 868,411 + +0.1 868,412 - +0.4 868,412 - -1.1 868,412 - +0.8 868,412 - +0.5 868,689 + Xcc-8004.925.1 0.19 +0.0 868,689 + Xcc-8004.925.1 0.19 -0.2 868,689 + Xcc-8004.925.1 0.19 -0.4 868,689 + Xcc-8004.925.1 0.19 -0.1 868,819 + Xcc-8004.925.1 0.28 +0.0 868,978 + Xcc-8004.925.1 0.40 +0.7 868,979 - Xcc-8004.925.1 0.40 -0.4 869,020 + Xcc-8004.925.1 0.43 -0.6 869,021 - Xcc-8004.925.1 0.43 +0.6 869,021 - Xcc-8004.925.1 0.43 -1.3 869,093 - Xcc-8004.925.1 0.48 -0.0 869,093 - Xcc-8004.925.1 0.48 -0.2 869,112 + Xcc-8004.925.1 0.49 -0.3 869,299 + Xcc-8004.925.1 0.63 +0.6 869,299 + Xcc-8004.925.1 0.63 -0.1 869,300 - Xcc-8004.925.1 0.63 +0.2
Or see this region's nucleotide sequence