Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3663.1 and Xcc-8004.3664.1 are separated by 407 nucleotides Xcc-8004.3664.1 and Xcc-8004.3665.1 are separated by 170 nucleotides
Xcc-8004.3663.1: Xcc-8004.3663.1 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 3,542,155 to 3,543,150
Xcc-8004.3663.1
Xcc-8004.3664.1: Xcc-8004.3664.1 - photolyase protein family, at 3,543,558 to 3,545,147
Xcc-8004.3664.1
Xcc-8004.3665.1: Xcc-8004.3665.1 - COG3380: Amine oxidase, flavin-containing, at 3,545,318 to 3,546,325
Xcc-8004.3665.1
Position (kb) 3543
3544
3545
3546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.934 kb on - strand, within Xcc-8004.3663.1 at 3543.308 kb on + strand at 3543.308 kb on + strand at 3543.309 kb on - strand at 3543.309 kb on - strand at 3543.331 kb on - strand at 3543.548 kb on - strand at 3543.548 kb on - strand at 3543.559 kb on + strand at 3543.560 kb on - strand at 3543.560 kb on - strand at 3543.647 kb on - strand at 3543.721 kb on + strand, within Xcc-8004.3664.1 at 3543.721 kb on + strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.779 kb on - strand, within Xcc-8004.3664.1 at 3543.788 kb on + strand, within Xcc-8004.3664.1 at 3543.789 kb on - strand, within Xcc-8004.3664.1 at 3543.797 kb on + strand, within Xcc-8004.3664.1 at 3543.797 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.815 kb on + strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.818 kb on - strand, within Xcc-8004.3664.1 at 3543.818 kb on - strand, within Xcc-8004.3664.1 at 3543.869 kb on + strand, within Xcc-8004.3664.1 at 3543.869 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.916 kb on + strand, within Xcc-8004.3664.1 at 3543.916 kb on + strand, within Xcc-8004.3664.1 at 3544.007 kb on + strand, within Xcc-8004.3664.1 at 3544.095 kb on + strand, within Xcc-8004.3664.1 at 3544.095 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.150 kb on + strand, within Xcc-8004.3664.1 at 3544.151 kb on - strand, within Xcc-8004.3664.1 at 3544.151 kb on - strand, within Xcc-8004.3664.1 at 3544.334 kb on - strand, within Xcc-8004.3664.1 at 3544.627 kb on + strand, within Xcc-8004.3664.1 at 3544.674 kb on + strand, within Xcc-8004.3664.1 at 3544.674 kb on + strand, within Xcc-8004.3664.1 at 3544.674 kb on + strand, within Xcc-8004.3664.1 at 3544.674 kb on + strand, within Xcc-8004.3664.1 at 3544.790 kb on - strand, within Xcc-8004.3664.1 at 3544.790 kb on - strand, within Xcc-8004.3664.1 at 3544.810 kb on + strand, within Xcc-8004.3664.1 at 3544.810 kb on + strand, within Xcc-8004.3664.1 at 3544.810 kb on + strand, within Xcc-8004.3664.1 at 3544.811 kb on - strand, within Xcc-8004.3664.1 at 3544.879 kb on + strand, within Xcc-8004.3664.1 at 3544.879 kb on + strand, within Xcc-8004.3664.1 at 3544.880 kb on - strand, within Xcc-8004.3664.1 at 3544.880 kb on - strand, within Xcc-8004.3664.1 at 3544.880 kb on - strand, within Xcc-8004.3664.1 at 3544.968 kb on + strand, within Xcc-8004.3664.1 at 3544.968 kb on + strand, within Xcc-8004.3664.1 at 3544.968 kb on + strand, within Xcc-8004.3664.1 at 3544.968 kb on + strand, within Xcc-8004.3664.1 at 3544.968 kb on + strand, within Xcc-8004.3664.1 at 3544.968 kb on + strand, within Xcc-8004.3664.1 at 3544.968 kb on + strand, within Xcc-8004.3664.1 at 3544.969 kb on - strand, within Xcc-8004.3664.1 at 3544.969 kb on - strand, within Xcc-8004.3664.1 at 3544.969 kb on - strand, within Xcc-8004.3664.1 at 3544.969 kb on - strand, within Xcc-8004.3664.1 at 3544.969 kb on - strand, within Xcc-8004.3664.1 at 3544.969 kb on - strand, within Xcc-8004.3664.1 at 3544.969 kb on - strand, within Xcc-8004.3664.1 at 3544.969 kb on - strand, within Xcc-8004.3664.1 at 3544.972 kb on + strand, within Xcc-8004.3664.1 at 3544.972 kb on + strand, within Xcc-8004.3664.1 at 3544.972 kb on + strand, within Xcc-8004.3664.1 at 3544.972 kb on + strand, within Xcc-8004.3664.1 at 3544.972 kb on + strand, within Xcc-8004.3664.1 at 3544.972 kb on + strand, within Xcc-8004.3664.1 at 3544.973 kb on - strand, within Xcc-8004.3664.1 at 3545.005 kb on + strand at 3545.005 kb on + strand at 3545.006 kb on - strand at 3545.006 kb on - strand at 3545.006 kb on - strand at 3545.006 kb on - strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.039 kb on + strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.040 kb on - strand at 3545.081 kb on + strand at 3545.081 kb on + strand at 3545.081 kb on + strand at 3545.276 kb on + strand at 3545.276 kb on + strand at 3545.276 kb on + strand at 3545.277 kb on - strand at 3545.341 kb on - strand at 3545.374 kb on + strand at 3545.374 kb on + strand at 3545.375 kb on - strand at 3545.731 kb on + strand, within Xcc-8004.3665.1 at 3545.951 kb on + strand, within Xcc-8004.3665.1 at 3546.141 kb on + strand, within Xcc-8004.3665.1 at 3546.142 kb on - strand, within Xcc-8004.3665.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 3,542,706 - Xcc-8004.3663.1 0.55 -1.1 3,542,706 - Xcc-8004.3663.1 0.55 -0.7 3,542,706 - Xcc-8004.3663.1 0.55 -1.2 3,542,895 - Xcc-8004.3663.1 0.74 -1.2 3,542,895 - Xcc-8004.3663.1 0.74 -2.5 3,542,895 - Xcc-8004.3663.1 0.74 -0.2 3,542,895 - Xcc-8004.3663.1 0.74 -0.8 3,542,934 - Xcc-8004.3663.1 0.78 -0.3 3,543,308 + +0.8 3,543,308 + +0.1 3,543,309 - -1.6 3,543,309 - -1.1 3,543,331 - +0.7 3,543,548 - -2.4 3,543,548 - +0.5 3,543,559 + +0.8 3,543,560 - +0.6 3,543,560 - -0.7 3,543,647 - -1.7 3,543,721 + Xcc-8004.3664.1 0.10 -0.1 3,543,721 + Xcc-8004.3664.1 0.10 +0.8 3,543,722 - Xcc-8004.3664.1 0.10 -1.3 3,543,722 - Xcc-8004.3664.1 0.10 +1.7 3,543,722 - Xcc-8004.3664.1 0.10 -2.2 3,543,779 - Xcc-8004.3664.1 0.14 -1.1 3,543,788 + Xcc-8004.3664.1 0.14 +0.8 3,543,789 - Xcc-8004.3664.1 0.15 -0.7 3,543,797 + Xcc-8004.3664.1 0.15 -0.2 3,543,797 + Xcc-8004.3664.1 0.15 +1.1 3,543,799 + Xcc-8004.3664.1 0.15 -3.2 3,543,799 + Xcc-8004.3664.1 0.15 +0.9 3,543,799 + Xcc-8004.3664.1 0.15 +0.1 3,543,800 - Xcc-8004.3664.1 0.15 -0.1 3,543,800 - Xcc-8004.3664.1 0.15 +0.9 3,543,800 - Xcc-8004.3664.1 0.15 +0.4 3,543,815 + Xcc-8004.3664.1 0.16 -0.0 3,543,816 - Xcc-8004.3664.1 0.16 -0.1 3,543,816 - Xcc-8004.3664.1 0.16 -0.1 3,543,816 - Xcc-8004.3664.1 0.16 +1.1 3,543,817 + Xcc-8004.3664.1 0.16 +1.1 3,543,817 + Xcc-8004.3664.1 0.16 -0.2 3,543,817 + Xcc-8004.3664.1 0.16 +0.2 3,543,817 + Xcc-8004.3664.1 0.16 -1.9 3,543,817 + Xcc-8004.3664.1 0.16 +0.1 3,543,817 + Xcc-8004.3664.1 0.16 +0.3 3,543,818 - Xcc-8004.3664.1 0.16 -0.3 3,543,818 - Xcc-8004.3664.1 0.16 -0.9 3,543,869 + Xcc-8004.3664.1 0.20 +0.1 3,543,869 + Xcc-8004.3664.1 0.20 -0.5 3,543,904 + Xcc-8004.3664.1 0.22 -0.2 3,543,904 + Xcc-8004.3664.1 0.22 +0.0 3,543,904 + Xcc-8004.3664.1 0.22 -1.5 3,543,905 - Xcc-8004.3664.1 0.22 +0.5 3,543,905 - Xcc-8004.3664.1 0.22 +0.8 3,543,905 - Xcc-8004.3664.1 0.22 -1.3 3,543,905 - Xcc-8004.3664.1 0.22 +0.2 3,543,916 + Xcc-8004.3664.1 0.23 -0.4 3,543,916 + Xcc-8004.3664.1 0.23 -0.7 3,544,007 + Xcc-8004.3664.1 0.28 -1.2 3,544,095 + Xcc-8004.3664.1 0.34 +0.7 3,544,095 + Xcc-8004.3664.1 0.34 +1.1 3,544,135 + Xcc-8004.3664.1 0.36 -0.4 3,544,135 + Xcc-8004.3664.1 0.36 -0.5 3,544,135 + Xcc-8004.3664.1 0.36 +0.9 3,544,136 - Xcc-8004.3664.1 0.36 +0.7 3,544,136 - Xcc-8004.3664.1 0.36 -1.0 3,544,136 - Xcc-8004.3664.1 0.36 +0.0 3,544,150 + Xcc-8004.3664.1 0.37 -0.5 3,544,151 - Xcc-8004.3664.1 0.37 -0.3 3,544,151 - Xcc-8004.3664.1 0.37 +0.1 3,544,334 - Xcc-8004.3664.1 0.49 -0.1 3,544,627 + Xcc-8004.3664.1 0.67 +0.5 3,544,674 + Xcc-8004.3664.1 0.70 -0.9 3,544,674 + Xcc-8004.3664.1 0.70 +1.7 3,544,674 + Xcc-8004.3664.1 0.70 -1.2 3,544,674 + Xcc-8004.3664.1 0.70 -0.5 3,544,790 - Xcc-8004.3664.1 0.77 -0.1 3,544,790 - Xcc-8004.3664.1 0.77 +2.7 3,544,810 + Xcc-8004.3664.1 0.79 -0.2 3,544,810 + Xcc-8004.3664.1 0.79 +0.3 3,544,810 + Xcc-8004.3664.1 0.79 +1.4 3,544,811 - Xcc-8004.3664.1 0.79 +0.1 3,544,879 + Xcc-8004.3664.1 0.83 +0.1 3,544,879 + Xcc-8004.3664.1 0.83 -0.1 3,544,880 - Xcc-8004.3664.1 0.83 +0.8 3,544,880 - Xcc-8004.3664.1 0.83 +1.2 3,544,880 - Xcc-8004.3664.1 0.83 +0.2 3,544,968 + Xcc-8004.3664.1 0.89 -2.6 3,544,968 + Xcc-8004.3664.1 0.89 -0.3 3,544,968 + Xcc-8004.3664.1 0.89 +1.5 3,544,968 + Xcc-8004.3664.1 0.89 -0.8 3,544,968 + Xcc-8004.3664.1 0.89 -0.9 3,544,968 + Xcc-8004.3664.1 0.89 -0.5 3,544,968 + Xcc-8004.3664.1 0.89 +2.1 3,544,969 - Xcc-8004.3664.1 0.89 -0.5 3,544,969 - Xcc-8004.3664.1 0.89 +0.2 3,544,969 - Xcc-8004.3664.1 0.89 -1.3 3,544,969 - Xcc-8004.3664.1 0.89 +0.7 3,544,969 - Xcc-8004.3664.1 0.89 +0.1 3,544,969 - Xcc-8004.3664.1 0.89 -0.8 3,544,969 - Xcc-8004.3664.1 0.89 -1.9 3,544,969 - Xcc-8004.3664.1 0.89 -0.1 3,544,972 + Xcc-8004.3664.1 0.89 -1.2 3,544,972 + Xcc-8004.3664.1 0.89 +1.1 3,544,972 + Xcc-8004.3664.1 0.89 -0.7 3,544,972 + Xcc-8004.3664.1 0.89 +0.1 3,544,972 + Xcc-8004.3664.1 0.89 +0.9 3,544,972 + Xcc-8004.3664.1 0.89 +1.3 3,544,973 - Xcc-8004.3664.1 0.89 -0.0 3,545,005 + -0.5 3,545,005 + -0.1 3,545,006 - +1.1 3,545,006 - -0.7 3,545,006 - -2.0 3,545,006 - +0.1 3,545,039 + +0.2 3,545,039 + -0.8 3,545,039 + +0.7 3,545,039 + +2.4 3,545,039 + -0.6 3,545,039 + +1.1 3,545,039 + -1.2 3,545,039 + +0.5 3,545,039 + +0.4 3,545,039 + -0.5 3,545,039 + -1.1 3,545,039 + +0.2 3,545,040 - +1.1 3,545,040 - -0.3 3,545,040 - +0.6 3,545,040 - -0.2 3,545,040 - -0.3 3,545,040 - -0.9 3,545,040 - -0.5 3,545,040 - +1.1 3,545,040 - -0.7 3,545,040 - +0.7 3,545,081 + -0.9 3,545,081 + +0.1 3,545,081 + +1.1 3,545,276 + +0.4 3,545,276 + -2.5 3,545,276 + -0.4 3,545,277 - -0.9 3,545,341 - -0.2 3,545,374 + +0.2 3,545,374 + +0.1 3,545,375 - +0.2 3,545,731 + Xcc-8004.3665.1 0.41 -0.7 3,545,951 + Xcc-8004.3665.1 0.63 -0.0 3,546,141 + Xcc-8004.3665.1 0.82 +1.3 3,546,142 - Xcc-8004.3665.1 0.82 +0.2
Or see this region's nucleotide sequence