Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3661.1 and Xcc-8004.3662.1 are separated by 88 nucleotides Xcc-8004.3662.1 and Xcc-8004.3663.1 overlap by 1 nucleotides Xcc-8004.3663.1 and Xcc-8004.3664.1 are separated by 407 nucleotides
Xcc-8004.3661.1: Xcc-8004.3661.1 - 5'-methylthioadenosine phosphorylase (EC 2.4.2.28), at 3,540,760 to 3,541,512
Xcc-8004.3661.1
Xcc-8004.3662.1: Xcc-8004.3662.1 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 3,541,601 to 3,542,155
Xcc-8004.3662.1
Xcc-8004.3663.1: Xcc-8004.3663.1 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 3,542,155 to 3,543,150
Xcc-8004.3663.1
Xcc-8004.3664.1: Xcc-8004.3664.1 - photolyase protein family, at 3,543,558 to 3,545,147
Xcc-8004.3664.1
Position (kb) 3542
3543
3544 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3541.178 kb on + strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.304 kb on + strand, within Xcc-8004.3661.1 at 3541.304 kb on + strand, within Xcc-8004.3661.1 at 3541.305 kb on - strand, within Xcc-8004.3661.1 at 3541.305 kb on - strand, within Xcc-8004.3661.1 at 3541.463 kb on + strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.589 kb on - strand at 3541.589 kb on - strand at 3541.603 kb on - strand at 3541.603 kb on - strand at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.934 kb on - strand, within Xcc-8004.3663.1 at 3543.308 kb on + strand at 3543.308 kb on + strand at 3543.309 kb on - strand at 3543.309 kb on - strand at 3543.331 kb on - strand at 3543.548 kb on - strand at 3543.548 kb on - strand at 3543.559 kb on + strand at 3543.560 kb on - strand at 3543.560 kb on - strand at 3543.647 kb on - strand at 3543.721 kb on + strand, within Xcc-8004.3664.1 at 3543.721 kb on + strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.779 kb on - strand, within Xcc-8004.3664.1 at 3543.788 kb on + strand, within Xcc-8004.3664.1 at 3543.789 kb on - strand, within Xcc-8004.3664.1 at 3543.797 kb on + strand, within Xcc-8004.3664.1 at 3543.797 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.815 kb on + strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.818 kb on - strand, within Xcc-8004.3664.1 at 3543.818 kb on - strand, within Xcc-8004.3664.1 at 3543.869 kb on + strand, within Xcc-8004.3664.1 at 3543.869 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.916 kb on + strand, within Xcc-8004.3664.1 at 3543.916 kb on + strand, within Xcc-8004.3664.1 at 3544.007 kb on + strand, within Xcc-8004.3664.1 at 3544.095 kb on + strand, within Xcc-8004.3664.1 at 3544.095 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.150 kb on + strand, within Xcc-8004.3664.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 3,541,178 + Xcc-8004.3661.1 0.56 -1.2 3,541,179 - Xcc-8004.3661.1 0.56 -1.2 3,541,179 - Xcc-8004.3661.1 0.56 -1.2 3,541,179 - Xcc-8004.3661.1 0.56 -1.5 3,541,304 + Xcc-8004.3661.1 0.72 -0.1 3,541,304 + Xcc-8004.3661.1 0.72 -0.5 3,541,305 - Xcc-8004.3661.1 0.72 -0.7 3,541,305 - Xcc-8004.3661.1 0.72 -1.8 3,541,463 + -1.2 3,541,464 - +0.3 3,541,464 - -0.0 3,541,464 - +0.1 3,541,464 - -0.5 3,541,464 - +0.3 3,541,589 - +0.7 3,541,589 - -0.1 3,541,603 - +0.0 3,541,603 - +0.7 3,542,706 - Xcc-8004.3663.1 0.55 -1.1 3,542,706 - Xcc-8004.3663.1 0.55 -0.7 3,542,706 - Xcc-8004.3663.1 0.55 -1.2 3,542,895 - Xcc-8004.3663.1 0.74 -1.2 3,542,895 - Xcc-8004.3663.1 0.74 -2.5 3,542,895 - Xcc-8004.3663.1 0.74 -0.2 3,542,895 - Xcc-8004.3663.1 0.74 -0.8 3,542,934 - Xcc-8004.3663.1 0.78 -0.3 3,543,308 + +0.8 3,543,308 + +0.1 3,543,309 - -1.6 3,543,309 - -1.1 3,543,331 - +0.7 3,543,548 - -2.4 3,543,548 - +0.5 3,543,559 + +0.8 3,543,560 - +0.6 3,543,560 - -0.7 3,543,647 - -1.7 3,543,721 + Xcc-8004.3664.1 0.10 -0.1 3,543,721 + Xcc-8004.3664.1 0.10 +0.8 3,543,722 - Xcc-8004.3664.1 0.10 -1.3 3,543,722 - Xcc-8004.3664.1 0.10 +1.7 3,543,722 - Xcc-8004.3664.1 0.10 -2.2 3,543,779 - Xcc-8004.3664.1 0.14 -1.1 3,543,788 + Xcc-8004.3664.1 0.14 +0.8 3,543,789 - Xcc-8004.3664.1 0.15 -0.7 3,543,797 + Xcc-8004.3664.1 0.15 -0.2 3,543,797 + Xcc-8004.3664.1 0.15 +1.1 3,543,799 + Xcc-8004.3664.1 0.15 -3.2 3,543,799 + Xcc-8004.3664.1 0.15 +0.9 3,543,799 + Xcc-8004.3664.1 0.15 +0.1 3,543,800 - Xcc-8004.3664.1 0.15 -0.1 3,543,800 - Xcc-8004.3664.1 0.15 +0.9 3,543,800 - Xcc-8004.3664.1 0.15 +0.4 3,543,815 + Xcc-8004.3664.1 0.16 -0.0 3,543,816 - Xcc-8004.3664.1 0.16 -0.1 3,543,816 - Xcc-8004.3664.1 0.16 -0.1 3,543,816 - Xcc-8004.3664.1 0.16 +1.1 3,543,817 + Xcc-8004.3664.1 0.16 +1.1 3,543,817 + Xcc-8004.3664.1 0.16 -0.2 3,543,817 + Xcc-8004.3664.1 0.16 +0.2 3,543,817 + Xcc-8004.3664.1 0.16 -1.9 3,543,817 + Xcc-8004.3664.1 0.16 +0.1 3,543,817 + Xcc-8004.3664.1 0.16 +0.3 3,543,818 - Xcc-8004.3664.1 0.16 -0.3 3,543,818 - Xcc-8004.3664.1 0.16 -0.9 3,543,869 + Xcc-8004.3664.1 0.20 +0.1 3,543,869 + Xcc-8004.3664.1 0.20 -0.5 3,543,904 + Xcc-8004.3664.1 0.22 -0.2 3,543,904 + Xcc-8004.3664.1 0.22 +0.0 3,543,904 + Xcc-8004.3664.1 0.22 -1.5 3,543,905 - Xcc-8004.3664.1 0.22 +0.5 3,543,905 - Xcc-8004.3664.1 0.22 +0.8 3,543,905 - Xcc-8004.3664.1 0.22 -1.3 3,543,905 - Xcc-8004.3664.1 0.22 +0.2 3,543,916 + Xcc-8004.3664.1 0.23 -0.4 3,543,916 + Xcc-8004.3664.1 0.23 -0.7 3,544,007 + Xcc-8004.3664.1 0.28 -1.2 3,544,095 + Xcc-8004.3664.1 0.34 +0.7 3,544,095 + Xcc-8004.3664.1 0.34 +1.1 3,544,135 + Xcc-8004.3664.1 0.36 -0.4 3,544,135 + Xcc-8004.3664.1 0.36 -0.5 3,544,135 + Xcc-8004.3664.1 0.36 +0.9 3,544,136 - Xcc-8004.3664.1 0.36 +0.7 3,544,136 - Xcc-8004.3664.1 0.36 -1.0 3,544,136 - Xcc-8004.3664.1 0.36 +0.0 3,544,150 + Xcc-8004.3664.1 0.37 -0.5
Or see this region's nucleotide sequence