Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1890.1

Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1888.1 and Xcc-8004.1889.1 are separated by 101 nucleotidesXcc-8004.1889.1 and Xcc-8004.1890.1 are separated by 161 nucleotidesXcc-8004.1890.1 and Xcc-8004.1891.1 are separated by 0 nucleotidesXcc-8004.1891.1 and Xcc-8004.1892.1 are separated by 31 nucleotides Xcc-8004.1888.1: Xcc-8004.1888.1 - Extracellular protease precursor (EC 3.4.24.-), at 1,824,070 to 1,824,609 Xcc-8004.1888.1 Xcc-8004.1889.1: Xcc-8004.1889.1 - hypothetical protein, at 1,824,711 to 1,824,929 Xcc-8004.1889.1 Xcc-8004.1890.1: Xcc-8004.1890.1 - hypothetical protein, at 1,825,091 to 1,825,966 Xcc-8004.1890.1 Xcc-8004.1891.1: Xcc-8004.1891.1 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 1,825,967 to 1,826,230 Xcc-8004.1891.1 Xcc-8004.1892.1: Xcc-8004.1892.1 - tRNA(Ile)-lysidine synthetase (EC 6.3.4.19), at 1,826,262 to 1,827,569 Xcc-8004.1892.1 Position (kb) 1825 1826Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1824.179 kb on + strand, within Xcc-8004.1888.1at 1824.179 kb on + strand, within Xcc-8004.1888.1at 1824.179 kb on + strand, within Xcc-8004.1888.1at 1824.179 kb on + strand, within Xcc-8004.1888.1at 1824.179 kb on + strand, within Xcc-8004.1888.1at 1824.180 kb on - strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.209 kb on + strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.210 kb on - strand, within Xcc-8004.1888.1at 1824.233 kb on + strand, within Xcc-8004.1888.1at 1824.233 kb on + strand, within Xcc-8004.1888.1at 1824.234 kb on - strand, within Xcc-8004.1888.1at 1824.234 kb on - strand, within Xcc-8004.1888.1at 1824.234 kb on - strand, within Xcc-8004.1888.1at 1824.234 kb on - strand, within Xcc-8004.1888.1at 1824.234 kb on - strand, within Xcc-8004.1888.1at 1824.234 kb on - strand, within Xcc-8004.1888.1at 1824.335 kb on + strand, within Xcc-8004.1888.1at 1824.335 kb on + strand, within Xcc-8004.1888.1at 1824.335 kb on + strand, within Xcc-8004.1888.1at 1824.336 kb on - strand, within Xcc-8004.1888.1at 1824.336 kb on - strand, within Xcc-8004.1888.1at 1824.336 kb on - strand, within Xcc-8004.1888.1at 1824.336 kb on - strand, within Xcc-8004.1888.1at 1824.404 kb on + strand, within Xcc-8004.1888.1at 1824.404 kb on + strand, within Xcc-8004.1888.1at 1824.404 kb on + strand, within Xcc-8004.1888.1at 1824.404 kb on + strand, within Xcc-8004.1888.1at 1824.405 kb on - strand, within Xcc-8004.1888.1at 1824.405 kb on - strand, within Xcc-8004.1888.1at 1824.405 kb on - strand, within Xcc-8004.1888.1at 1824.405 kb on - strand, within Xcc-8004.1888.1at 1824.661 kb on + strandat 1824.661 kb on + strandat 1824.662 kb on - strandat 1824.662 kb on - strandat 1824.662 kb on - strandat 1824.662 kb on - strandat 1824.697 kb on - strandat 1824.703 kb on - strandat 1824.727 kb on - strandat 1824.738 kb on + strand, within Xcc-8004.1889.1at 1824.738 kb on + strand, within Xcc-8004.1889.1at 1824.739 kb on - strand, within Xcc-8004.1889.1at 1824.739 kb on - strand, within Xcc-8004.1889.1at 1824.752 kb on - strand, within Xcc-8004.1889.1at 1824.752 kb on - strand, within Xcc-8004.1889.1at 1824.755 kb on + strand, within Xcc-8004.1889.1at 1824.755 kb on + strand, within Xcc-8004.1889.1at 1824.755 kb on + strand, within Xcc-8004.1889.1at 1824.983 kb on + strandat 1824.983 kb on + strandat 1824.983 kb on + strandat 1824.983 kb on + strandat 1824.984 kb on - strandat 1824.984 kb on - strandat 1824.984 kb on - strandat 1824.984 kb on - strandat 1824.984 kb on - strandat 1824.984 kb on - strandat 1824.984 kb on - strandat 1824.984 kb on - strandat 1824.984 kb on - strandat 1825.092 kb on + strandat 1825.092 kb on + strandat 1825.092 kb on + strandat 1825.093 kb on - strandat 1825.093 kb on - strandat 1825.093 kb on - strandat 1825.174 kb on + strandat 1825.174 kb on + strandat 1825.174 kb on + strandat 1825.174 kb on + strandat 1825.174 kb on + strandat 1825.174 kb on + strandat 1825.175 kb on - strandat 1825.175 kb on - strandat 1825.175 kb on - strandat 1825.175 kb on - strandat 1825.175 kb on - strandat 1825.175 kb on - strandat 1825.175 kb on - strandat 1825.175 kb on - strandat 1825.175 kb on - strandat 1825.234 kb on - strand, within Xcc-8004.1890.1at 1825.234 kb on - strand, within Xcc-8004.1890.1at 1825.234 kb on - strand, within Xcc-8004.1890.1at 1825.234 kb on - strand, within Xcc-8004.1890.1at 1825.234 kb on - strand, within Xcc-8004.1890.1at 1825.234 kb on - strand, within Xcc-8004.1890.1at 1825.234 kb on - strand, within Xcc-8004.1890.1at 1825.378 kb on + strand, within Xcc-8004.1890.1at 1825.673 kb on - strand, within Xcc-8004.1890.1at 1825.713 kb on - strand, within Xcc-8004.1890.1at 1825.713 kb on - strand, within Xcc-8004.1890.1at 1825.734 kb on + strand, within Xcc-8004.1890.1at 1825.735 kb on - strand, within Xcc-8004.1890.1at 1825.812 kb on + strand, within Xcc-8004.1890.1at 1825.812 kb on + strand, within Xcc-8004.1890.1at 1825.813 kb on - strand, within Xcc-8004.1890.1at 1825.813 kb on - strand, within Xcc-8004.1890.1at 1825.813 kb on - strand, within Xcc-8004.1890.1at 1825.813 kb on - strand, within Xcc-8004.1890.1at 1825.813 kb on - strand, within Xcc-8004.1890.1at 1825.813 kb on - strand, within Xcc-8004.1890.1at 1826.083 kb on - strand, within Xcc-8004.1891.1at 1826.104 kb on - strand, within Xcc-8004.1891.1at 1826.104 kb on - strand, within Xcc-8004.1891.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
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1,824,179 + Xcc-8004.1888.1 0.20 +0.1
1,824,179 + Xcc-8004.1888.1 0.20 +0.1
1,824,179 + Xcc-8004.1888.1 0.20 -0.4
1,824,179 + Xcc-8004.1888.1 0.20 -1.2
1,824,179 + Xcc-8004.1888.1 0.20 -0.6
1,824,180 - Xcc-8004.1888.1 0.20 +0.9
1,824,209 + Xcc-8004.1888.1 0.26 -0.4
1,824,209 + Xcc-8004.1888.1 0.26 -0.1
1,824,209 + Xcc-8004.1888.1 0.26 -0.8
1,824,209 + Xcc-8004.1888.1 0.26 +0.1
1,824,209 + Xcc-8004.1888.1 0.26 -0.1
1,824,209 + Xcc-8004.1888.1 0.26 -0.3
1,824,209 + Xcc-8004.1888.1 0.26 -0.1
1,824,209 + Xcc-8004.1888.1 0.26 -1.5
1,824,209 + Xcc-8004.1888.1 0.26 -0.8
1,824,209 + Xcc-8004.1888.1 0.26 +0.3
1,824,209 + Xcc-8004.1888.1 0.26 -0.5
1,824,209 + Xcc-8004.1888.1 0.26 +0.4
1,824,209 + Xcc-8004.1888.1 0.26 +0.1
1,824,209 + Xcc-8004.1888.1 0.26 -0.7
1,824,209 + Xcc-8004.1888.1 0.26 -0.7
1,824,209 + Xcc-8004.1888.1 0.26 +0.5
1,824,209 + Xcc-8004.1888.1 0.26 +0.0
1,824,209 + Xcc-8004.1888.1 0.26 +1.1
1,824,210 - Xcc-8004.1888.1 0.26 -0.2
1,824,210 - Xcc-8004.1888.1 0.26 +0.2
1,824,210 - Xcc-8004.1888.1 0.26 -0.5
1,824,210 - Xcc-8004.1888.1 0.26 -0.8
1,824,210 - Xcc-8004.1888.1 0.26 +0.2
1,824,210 - Xcc-8004.1888.1 0.26 +0.7
1,824,210 - Xcc-8004.1888.1 0.26 +0.3
1,824,210 - Xcc-8004.1888.1 0.26 +0.9
1,824,210 - Xcc-8004.1888.1 0.26 -0.5
1,824,233 + Xcc-8004.1888.1 0.30 -0.6
1,824,233 + Xcc-8004.1888.1 0.30 -2.5
1,824,234 - Xcc-8004.1888.1 0.30 -1.2
1,824,234 - Xcc-8004.1888.1 0.30 -0.7
1,824,234 - Xcc-8004.1888.1 0.30 +0.9
1,824,234 - Xcc-8004.1888.1 0.30 -0.8
1,824,234 - Xcc-8004.1888.1 0.30 +2.3
1,824,234 - Xcc-8004.1888.1 0.30 -2.4
1,824,335 + Xcc-8004.1888.1 0.49 -0.8
1,824,335 + Xcc-8004.1888.1 0.49 +0.2
1,824,335 + Xcc-8004.1888.1 0.49 +0.1
1,824,336 - Xcc-8004.1888.1 0.49 -0.2
1,824,336 - Xcc-8004.1888.1 0.49 +0.8
1,824,336 - Xcc-8004.1888.1 0.49 +0.5
1,824,336 - Xcc-8004.1888.1 0.49 +0.4
1,824,404 + Xcc-8004.1888.1 0.62 -0.5
1,824,404 + Xcc-8004.1888.1 0.62 -0.4
1,824,404 + Xcc-8004.1888.1 0.62 +1.0
1,824,404 + Xcc-8004.1888.1 0.62 +0.9
1,824,405 - Xcc-8004.1888.1 0.62 +0.6
1,824,405 - Xcc-8004.1888.1 0.62 -0.2
1,824,405 - Xcc-8004.1888.1 0.62 +1.1
1,824,405 - Xcc-8004.1888.1 0.62 +2.2
1,824,661 + -0.5
1,824,661 + -0.1
1,824,662 - -0.9
1,824,662 - -0.1
1,824,662 - +0.7
1,824,662 - +0.7
1,824,697 - +0.8
1,824,703 - +3.1
1,824,727 - -1.0
1,824,738 + Xcc-8004.1889.1 0.12 +0.8
1,824,738 + Xcc-8004.1889.1 0.12 -0.4
1,824,739 - Xcc-8004.1889.1 0.13 +0.7
1,824,739 - Xcc-8004.1889.1 0.13 +0.2
1,824,752 - Xcc-8004.1889.1 0.19 +1.6
1,824,752 - Xcc-8004.1889.1 0.19 +0.2
1,824,755 + Xcc-8004.1889.1 0.20 +0.2
1,824,755 + Xcc-8004.1889.1 0.20 -0.5
1,824,755 + Xcc-8004.1889.1 0.20 -1.0
1,824,983 + +0.1
1,824,983 + +0.3
1,824,983 + +0.6
1,824,983 + -0.9
1,824,984 - -0.5
1,824,984 - +0.6
1,824,984 - -1.2
1,824,984 - +1.6
1,824,984 - +1.2
1,824,984 - +0.5
1,824,984 - +0.1
1,824,984 - -0.7
1,824,984 - -0.2
1,825,092 + -0.1
1,825,092 + +1.1
1,825,092 + +0.1
1,825,093 - -0.5
1,825,093 - -0.1
1,825,093 - -0.4
1,825,174 + -1.7
1,825,174 + +1.1
1,825,174 + +0.1
1,825,174 + -1.7
1,825,174 + -0.5
1,825,174 + +0.3
1,825,175 - +0.9
1,825,175 - +1.0
1,825,175 - +0.3
1,825,175 - +2.4
1,825,175 - +0.3
1,825,175 - +0.8
1,825,175 - -1.7
1,825,175 - -0.5
1,825,175 - +1.9
1,825,234 - Xcc-8004.1890.1 0.16 -1.0
1,825,234 - Xcc-8004.1890.1 0.16 -2.1
1,825,234 - Xcc-8004.1890.1 0.16 -0.6
1,825,234 - Xcc-8004.1890.1 0.16 -0.5
1,825,234 - Xcc-8004.1890.1 0.16 -0.5
1,825,234 - Xcc-8004.1890.1 0.16 -0.1
1,825,234 - Xcc-8004.1890.1 0.16 +0.2
1,825,378 + Xcc-8004.1890.1 0.33 -1.7
1,825,673 - Xcc-8004.1890.1 0.66 -1.3
1,825,713 - Xcc-8004.1890.1 0.71 -1.7
1,825,713 - Xcc-8004.1890.1 0.71 -2.1
1,825,734 + Xcc-8004.1890.1 0.73 -2.6
1,825,735 - Xcc-8004.1890.1 0.74 -0.4
1,825,812 + Xcc-8004.1890.1 0.82 +0.1
1,825,812 + Xcc-8004.1890.1 0.82 -0.2
1,825,813 - Xcc-8004.1890.1 0.82 -2.2
1,825,813 - Xcc-8004.1890.1 0.82 -0.6
1,825,813 - Xcc-8004.1890.1 0.82 +0.2
1,825,813 - Xcc-8004.1890.1 0.82 +2.1
1,825,813 - Xcc-8004.1890.1 0.82 +0.7
1,825,813 - Xcc-8004.1890.1 0.82 +1.3
1,826,083 - Xcc-8004.1891.1 0.44 -2.0
1,826,104 - Xcc-8004.1891.1 0.52 +0.2
1,826,104 - Xcc-8004.1891.1 0.52 +0.9

Or see this region's nucleotide sequence