Experiment: Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.181.1 and Xcc-8004.183.1 are separated by 185 nucleotides Xcc-8004.183.1 and Xcc-8004.184.1 are separated by 261 nucleotides Xcc-8004.184.1 and Xcc-8004.185.1 overlap by 4 nucleotides
Xcc-8004.181.1: Xcc-8004.181.1 - putative; ORF located using Glimmer/Genemark, at 173,580 to 174,251
Xcc-8004.181.1
Xcc-8004.183.1: Xcc-8004.183.1 - FIG01211553: hypothetical protein, at 174,437 to 174,769
Xcc-8004.183.1
Xcc-8004.184.1: Xcc-8004.184.1 - Alpha-amylase (EC 3.2.1.1), at 175,031 to 178,147
Xcc-8004.184.1
Xcc-8004.185.1: Xcc-8004.185.1 - Trehalose synthase (EC 5.4.99.16), at 178,144 to 181,494
Xcc-8004.185.1
Position (kb) 175
176
177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 174.037 kb on + strand, within Xcc-8004.181.1 at 174.057 kb on + strand, within Xcc-8004.181.1 at 174.058 kb on - strand, within Xcc-8004.181.1 at 174.058 kb on - strand, within Xcc-8004.181.1 at 174.100 kb on + strand, within Xcc-8004.181.1 at 174.111 kb on + strand, within Xcc-8004.181.1 at 174.132 kb on - strand, within Xcc-8004.181.1 at 174.146 kb on + strand, within Xcc-8004.181.1 at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.278 kb on - strand at 174.278 kb on - strand at 174.278 kb on - strand at 174.288 kb on - strand at 174.428 kb on + strand at 174.428 kb on + strand at 174.429 kb on - strand at 174.429 kb on - strand at 174.429 kb on - strand at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.643 kb on - strand, within Xcc-8004.183.1 at 174.796 kb on + strand at 174.796 kb on + strand at 174.797 kb on - strand at 174.812 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.837 kb on + strand at 174.838 kb on - strand at 174.883 kb on + strand at 174.884 kb on - strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.045 kb on - strand at 175.045 kb on - strand at 175.045 kb on - strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.394 kb on + strand, within Xcc-8004.184.1 at 175.395 kb on - strand, within Xcc-8004.184.1 at 175.482 kb on + strand, within Xcc-8004.184.1 at 175.483 kb on - strand, within Xcc-8004.184.1 at 175.483 kb on - strand, within Xcc-8004.184.1 at 176.062 kb on + strand, within Xcc-8004.184.1 at 176.062 kb on + strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.115 kb on - strand, within Xcc-8004.184.1 at 176.426 kb on + strand, within Xcc-8004.184.1 at 176.427 kb on - strand, within Xcc-8004.184.1 at 176.464 kb on + strand, within Xcc-8004.184.1 at 176.464 kb on + strand, within Xcc-8004.184.1 at 176.711 kb on + strand, within Xcc-8004.184.1 at 176.769 kb on - strand, within Xcc-8004.184.1 at 176.769 kb on - strand, within Xcc-8004.184.1 at 176.769 kb on - strand, within Xcc-8004.184.1 at 176.848 kb on + strand, within Xcc-8004.184.1 at 176.876 kb on + strand, within Xcc-8004.184.1 at 176.876 kb on + strand, within Xcc-8004.184.1 at 176.876 kb on + strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 177.194 kb on + strand, within Xcc-8004.184.1 at 177.425 kb on + strand, within Xcc-8004.184.1 at 177.425 kb on + strand, within Xcc-8004.184.1 at 177.425 kb on + strand, within Xcc-8004.184.1 at 177.426 kb on - strand, within Xcc-8004.184.1 at 177.426 kb on - strand, within Xcc-8004.184.1 at 177.458 kb on + strand, within Xcc-8004.184.1 at 177.459 kb on - strand, within Xcc-8004.184.1 at 177.459 kb on - strand, within Xcc-8004.184.1 at 177.459 kb on - strand, within Xcc-8004.184.1 at 177.464 kb on + strand, within Xcc-8004.184.1 at 177.464 kb on + strand, within Xcc-8004.184.1 at 177.464 kb on + strand, within Xcc-8004.184.1 at 177.465 kb on - strand, within Xcc-8004.184.1 at 177.465 kb on - strand, within Xcc-8004.184.1 at 177.465 kb on - strand, within Xcc-8004.184.1 at 177.504 kb on - strand, within Xcc-8004.184.1 at 177.566 kb on - strand, within Xcc-8004.184.1 at 177.566 kb on - strand, within Xcc-8004.184.1 at 177.566 kb on - strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.719 kb on + strand, within Xcc-8004.184.1 at 177.720 kb on - strand, within Xcc-8004.184.1 at 177.720 kb on - strand, within Xcc-8004.184.1 at 177.720 kb on - strand, within Xcc-8004.184.1 at 177.720 kb on - strand, within Xcc-8004.184.1 at 177.738 kb on - strand, within Xcc-8004.184.1 at 177.854 kb on + strand at 177.855 kb on - strand at 177.855 kb on - strand at 177.881 kb on + strand at 177.882 kb on - strand at 177.882 kb on - strand at 177.882 kb on - strand at 178.117 kb on - strand at 178.210 kb on + strand at 178.211 kb on - strand at 178.211 kb on - strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.229 kb on - strand at 178.309 kb on + strand at 178.310 kb on - strand at 178.354 kb on + strand at 178.354 kb on + strand at 178.396 kb on + strand at 178.396 kb on + strand at 178.397 kb on - strand at 178.397 kb on - strand at 178.397 kb on - strand at 178.397 kb on - strand at 178.397 kb on - strand at 178.574 kb on - strand, within Xcc-8004.185.1 at 178.574 kb on - strand, within Xcc-8004.185.1 at 178.574 kb on - strand, within Xcc-8004.185.1 at 178.574 kb on - strand, within Xcc-8004.185.1 at 178.600 kb on + strand, within Xcc-8004.185.1 at 178.600 kb on + strand, within Xcc-8004.185.1 at 178.672 kb on + strand, within Xcc-8004.185.1 at 178.672 kb on + strand, within Xcc-8004.185.1 at 178.673 kb on - strand, within Xcc-8004.185.1 at 178.673 kb on - strand, within Xcc-8004.185.1 at 178.690 kb on + strand, within Xcc-8004.185.1 at 178.690 kb on + strand, within Xcc-8004.185.1 at 178.690 kb on + strand, within Xcc-8004.185.1 at 178.808 kb on - strand, within Xcc-8004.185.1 at 178.808 kb on - strand, within Xcc-8004.185.1 at 178.808 kb on - strand, within Xcc-8004.185.1 at 178.808 kb on - strand, within Xcc-8004.185.1 at 178.954 kb on + strand, within Xcc-8004.185.1 at 178.954 kb on + strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 174,037 + Xcc-8004.181.1 0.68 -0.4 174,057 + Xcc-8004.181.1 0.71 -1.0 174,058 - Xcc-8004.181.1 0.71 -0.9 174,058 - Xcc-8004.181.1 0.71 +0.0 174,100 + Xcc-8004.181.1 0.77 +0.1 174,111 + Xcc-8004.181.1 0.79 -1.0 174,132 - Xcc-8004.181.1 0.82 -1.0 174,146 + Xcc-8004.181.1 0.84 +1.2 174,277 + +0.7 174,277 + +0.5 174,277 + -0.0 174,277 + -0.0 174,277 + -0.0 174,277 + +1.1 174,277 + +0.4 174,277 + -0.4 174,278 - -0.4 174,278 - +0.4 174,278 - -0.0 174,288 - +1.3 174,428 + +0.3 174,428 + +2.0 174,429 - -0.4 174,429 - -0.2 174,429 - +0.9 174,471 + Xcc-8004.183.1 0.10 -0.9 174,471 + Xcc-8004.183.1 0.10 +1.0 174,471 + Xcc-8004.183.1 0.10 +1.7 174,472 - Xcc-8004.183.1 0.11 +0.2 174,472 - Xcc-8004.183.1 0.11 -0.3 174,472 - Xcc-8004.183.1 0.11 +1.7 174,472 - Xcc-8004.183.1 0.11 -1.6 174,472 - Xcc-8004.183.1 0.11 -0.7 174,642 + Xcc-8004.183.1 0.62 +0.9 174,642 + Xcc-8004.183.1 0.62 -0.0 174,642 + Xcc-8004.183.1 0.62 +2.0 174,642 + Xcc-8004.183.1 0.62 +0.1 174,643 - Xcc-8004.183.1 0.62 -1.9 174,796 + -1.4 174,796 + +0.1 174,797 - +0.9 174,812 + +1.0 174,831 + +0.4 174,831 + +0.6 174,831 + +1.0 174,831 + +0.6 174,831 + -0.5 174,831 + -0.5 174,832 - +0.4 174,832 - -0.1 174,832 - +0.7 174,832 - +0.3 174,837 + -0.6 174,838 - +0.6 174,883 + +0.5 174,884 - +0.7 175,044 + -0.7 175,044 + -1.6 175,044 + -1.0 175,044 + -0.4 175,045 - +0.4 175,045 - -0.1 175,045 - +0.4 175,121 + +0.5 175,121 + -0.4 175,121 + +0.0 175,121 + +0.1 175,121 + +0.7 175,121 + +0.1 175,121 + -0.1 175,122 - +1.0 175,122 - -0.4 175,122 - +0.2 175,122 - -0.2 175,122 - -0.3 175,125 + +1.8 175,125 + +0.6 175,125 + +0.1 175,125 + -0.3 175,125 + +1.3 175,125 + +1.0 175,125 + +2.0 175,126 - -0.8 175,126 - +0.6 175,126 - +0.8 175,126 - -0.4 175,126 - -0.4 175,126 - -0.5 175,126 - -0.6 175,126 - -0.9 175,126 - +0.6 175,126 - -0.9 175,126 - -0.2 175,126 - -0.0 175,394 + Xcc-8004.184.1 0.12 +0.7 175,395 - Xcc-8004.184.1 0.12 +0.0 175,482 + Xcc-8004.184.1 0.14 +1.0 175,483 - Xcc-8004.184.1 0.15 -1.0 175,483 - Xcc-8004.184.1 0.15 -0.0 176,062 + Xcc-8004.184.1 0.33 -0.3 176,062 + Xcc-8004.184.1 0.33 +2.1 176,063 - Xcc-8004.184.1 0.33 -0.4 176,063 - Xcc-8004.184.1 0.33 -0.3 176,063 - Xcc-8004.184.1 0.33 +1.0 176,063 - Xcc-8004.184.1 0.33 +0.9 176,063 - Xcc-8004.184.1 0.33 +0.7 176,115 - Xcc-8004.184.1 0.35 -0.5 176,426 + Xcc-8004.184.1 0.45 +0.5 176,427 - Xcc-8004.184.1 0.45 +0.4 176,464 + Xcc-8004.184.1 0.46 +0.3 176,464 + Xcc-8004.184.1 0.46 -0.6 176,711 + Xcc-8004.184.1 0.54 +0.4 176,769 - Xcc-8004.184.1 0.56 -1.2 176,769 - Xcc-8004.184.1 0.56 +0.3 176,769 - Xcc-8004.184.1 0.56 +0.4 176,848 + Xcc-8004.184.1 0.58 +0.2 176,876 + Xcc-8004.184.1 0.59 +0.2 176,876 + Xcc-8004.184.1 0.59 +0.7 176,876 + Xcc-8004.184.1 0.59 +0.5 176,877 - Xcc-8004.184.1 0.59 -0.1 176,877 - Xcc-8004.184.1 0.59 -0.0 176,877 - Xcc-8004.184.1 0.59 +1.0 176,877 - Xcc-8004.184.1 0.59 +0.4 176,877 - Xcc-8004.184.1 0.59 -0.1 177,194 + Xcc-8004.184.1 0.69 -1.3 177,425 + Xcc-8004.184.1 0.77 -1.0 177,425 + Xcc-8004.184.1 0.77 -0.4 177,425 + Xcc-8004.184.1 0.77 -0.0 177,426 - Xcc-8004.184.1 0.77 +0.2 177,426 - Xcc-8004.184.1 0.77 -0.9 177,458 + Xcc-8004.184.1 0.78 +1.0 177,459 - Xcc-8004.184.1 0.78 -1.0 177,459 - Xcc-8004.184.1 0.78 +0.6 177,459 - Xcc-8004.184.1 0.78 -1.5 177,464 + Xcc-8004.184.1 0.78 -0.1 177,464 + Xcc-8004.184.1 0.78 +0.7 177,464 + Xcc-8004.184.1 0.78 +0.1 177,465 - Xcc-8004.184.1 0.78 -0.5 177,465 - Xcc-8004.184.1 0.78 +1.2 177,465 - Xcc-8004.184.1 0.78 -0.5 177,504 - Xcc-8004.184.1 0.79 +0.6 177,566 - Xcc-8004.184.1 0.81 -1.7 177,566 - Xcc-8004.184.1 0.81 -1.6 177,566 - Xcc-8004.184.1 0.81 +0.3 177,665 + Xcc-8004.184.1 0.85 +0.9 177,665 + Xcc-8004.184.1 0.85 +2.0 177,665 + Xcc-8004.184.1 0.85 +0.5 177,665 + Xcc-8004.184.1 0.85 -0.4 177,665 + Xcc-8004.184.1 0.85 +1.0 177,666 - Xcc-8004.184.1 0.85 -0.6 177,666 - Xcc-8004.184.1 0.85 +0.3 177,666 - Xcc-8004.184.1 0.85 +0.2 177,666 - Xcc-8004.184.1 0.85 -1.3 177,666 - Xcc-8004.184.1 0.85 +0.2 177,719 + Xcc-8004.184.1 0.86 -0.6 177,720 - Xcc-8004.184.1 0.86 +0.0 177,720 - Xcc-8004.184.1 0.86 -2.6 177,720 - Xcc-8004.184.1 0.86 +0.1 177,720 - Xcc-8004.184.1 0.86 -0.2 177,738 - Xcc-8004.184.1 0.87 -0.1 177,854 + +1.2 177,855 - -0.4 177,855 - -0.2 177,881 + +2.5 177,882 - +2.0 177,882 - -1.3 177,882 - +0.1 178,117 - +0.4 178,210 + +0.7 178,211 - -0.2 178,211 - +0.7 178,228 + -0.0 178,228 + +1.1 178,228 + -0.1 178,228 + +0.3 178,229 - +0.2 178,309 + -0.8 178,310 - -0.3 178,354 + -0.4 178,354 + -0.5 178,396 + +0.5 178,396 + +0.3 178,397 - +1.0 178,397 - +0.5 178,397 - +0.6 178,397 - +0.6 178,397 - -0.4 178,574 - Xcc-8004.185.1 0.13 +1.2 178,574 - Xcc-8004.185.1 0.13 +0.3 178,574 - Xcc-8004.185.1 0.13 +0.5 178,574 - Xcc-8004.185.1 0.13 +3.8 178,600 + Xcc-8004.185.1 0.14 +1.0 178,600 + Xcc-8004.185.1 0.14 -0.0 178,672 + Xcc-8004.185.1 0.16 +1.0 178,672 + Xcc-8004.185.1 0.16 +1.1 178,673 - Xcc-8004.185.1 0.16 -0.2 178,673 - Xcc-8004.185.1 0.16 -0.5 178,690 + Xcc-8004.185.1 0.16 +0.8 178,690 + Xcc-8004.185.1 0.16 +0.6 178,690 + Xcc-8004.185.1 0.16 -0.2 178,808 - Xcc-8004.185.1 0.20 -0.5 178,808 - Xcc-8004.185.1 0.20 -2.4 178,808 - Xcc-8004.185.1 0.20 -1.0 178,808 - Xcc-8004.185.1 0.20 -2.6 178,954 + Xcc-8004.185.1 0.24 +1.3 178,954 + Xcc-8004.185.1 0.24 +0.1 178,955 - Xcc-8004.185.1 0.24 -0.0 178,955 - Xcc-8004.185.1 0.24 +0.3 178,955 - Xcc-8004.185.1 0.24 +0.6 178,955 - Xcc-8004.185.1 0.24 -0.3 178,955 - Xcc-8004.185.1 0.24 +0.3 179,017 + Xcc-8004.185.1 0.26 +1.0 179,017 + Xcc-8004.185.1 0.26 +0.1 179,017 + Xcc-8004.185.1 0.26 +2.0 179,017 + Xcc-8004.185.1 0.26 -0.9 179,017 + Xcc-8004.185.1 0.26 +2.0 179,018 - Xcc-8004.185.1 0.26 +1.0 179,018 - Xcc-8004.185.1 0.26 +0.0 179,018 - Xcc-8004.185.1 0.26 +0.2 179,018 - Xcc-8004.185.1 0.26 +0.4 179,018 - Xcc-8004.185.1 0.26 +0.5
Or see this region's nucleotide sequence