Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19475

Experiment: casaminos

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS19470 and HSERO_RS19475 overlap by 1 nucleotidesHSERO_RS19475 and HSERO_RS19480 are separated by 237 nucleotides HSERO_RS19470: HSERO_RS19470 - ubiquinone biosynthesis protein UbiB, at 4,461,550 to 4,463,124 _RS19470 HSERO_RS19475: HSERO_RS19475 - sterol-binding protein, at 4,463,124 to 4,463,690 _RS19475 HSERO_RS19480: HSERO_RS19480 - membrane protein, at 4,463,928 to 4,464,881 _RS19480 Position (kb) 4463 4464Strain fitness (log2 ratio) -1 0 1at 4463.855 kb on - strandat 4463.874 kb on + strandat 4463.887 kb on - strandat 4463.921 kb on - strandat 4463.986 kb on - strandat 4464.039 kb on - strand, within HSERO_RS19480at 4464.039 kb on - strand, within HSERO_RS19480at 4464.252 kb on + strand, within HSERO_RS19480at 4464.437 kb on - strand, within HSERO_RS19480at 4464.613 kb on - strand, within HSERO_RS19480at 4464.668 kb on - strand, within HSERO_RS19480at 4464.668 kb on - strand, within HSERO_RS19480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
remove
4,463,855 - +1.1
4,463,874 + -0.1
4,463,887 - -0.1
4,463,921 - -0.3
4,463,986 - -0.1
4,464,039 - HSERO_RS19480 0.12 +0.2
4,464,039 - HSERO_RS19480 0.12 -0.0
4,464,252 + HSERO_RS19480 0.34 +1.3
4,464,437 - HSERO_RS19480 0.53 -0.4
4,464,613 - HSERO_RS19480 0.72 +0.6
4,464,668 - HSERO_RS19480 0.78 -0.6
4,464,668 - HSERO_RS19480 0.78 +0.7

Or see this region's nucleotide sequence