Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01920

Experiment: casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01915 and HSERO_RS01920 are separated by 3 nucleotidesHSERO_RS01920 and HSERO_RS01925 are separated by 41 nucleotides HSERO_RS01915: HSERO_RS01915 - membrane protein, at 421,059 to 422,348 _RS01915 HSERO_RS01920: HSERO_RS01920 - 50S ribosomal protein L11 methyltransferase, at 422,352 to 423,266 _RS01920 HSERO_RS01925: HSERO_RS01925 - acetyl-CoA carboxylase biotin carboxylase subunit, at 423,308 to 424,687 _RS01925 Position (kb) 422 423 424Strain fitness (log2 ratio) -1 0 1 2at 421.411 kb on + strand, within HSERO_RS01915at 421.555 kb on - strand, within HSERO_RS01915at 421.627 kb on - strand, within HSERO_RS01915at 421.807 kb on - strandat 422.168 kb on - strand, within HSERO_RS01915at 422.303 kb on + strandat 422.413 kb on - strandat 422.510 kb on + strand, within HSERO_RS01920at 422.518 kb on - strand, within HSERO_RS01920at 422.609 kb on + strand, within HSERO_RS01920at 422.751 kb on + strand, within HSERO_RS01920at 422.972 kb on - strand, within HSERO_RS01920at 423.001 kb on + strand, within HSERO_RS01920at 423.014 kb on - strand, within HSERO_RS01920

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
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421,411 + HSERO_RS01915 0.27 -0.5
421,555 - HSERO_RS01915 0.38 +0.6
421,627 - HSERO_RS01915 0.44 +0.0
421,807 - +1.9
422,168 - HSERO_RS01915 0.86 +0.4
422,303 + +0.5
422,413 - +0.1
422,510 + HSERO_RS01920 0.17 -1.3
422,518 - HSERO_RS01920 0.18 -0.3
422,609 + HSERO_RS01920 0.28 +0.1
422,751 + HSERO_RS01920 0.44 -0.0
422,972 - HSERO_RS01920 0.68 +0.8
423,001 + HSERO_RS01920 0.71 +0.1
423,014 - HSERO_RS01920 0.72 -0.2

Or see this region's nucleotide sequence