Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26190

Experiment: Furfuryl Alcohol 0.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_26185 and AO353_26190 overlap by 4 nucleotidesAO353_26190 and AO353_26195 are separated by 59 nucleotidesAO353_26195 and AO353_26200 are separated by 3 nucleotides AO353_26185: AO353_26185 - phage tail protein, at 5,760,162 to 5,763,419 _26185 AO353_26190: AO353_26190 - hypothetical protein, at 5,763,416 to 5,763,673 _26190 AO353_26195: AO353_26195 - hypothetical protein, at 5,763,733 to 5,764,113 _26195 AO353_26200: AO353_26200 - phage tail protein, at 5,764,117 to 5,764,770 _26200 Position (kb) 5763 5764Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5762.492 kb on + strand, within AO353_26185at 5762.492 kb on + strand, within AO353_26185at 5762.492 kb on + strand, within AO353_26185at 5762.492 kb on + strand, within AO353_26185at 5762.492 kb on + strand, within AO353_26185at 5762.492 kb on + strand, within AO353_26185at 5762.493 kb on - strand, within AO353_26185at 5762.493 kb on - strand, within AO353_26185at 5762.493 kb on - strand, within AO353_26185at 5762.524 kb on + strand, within AO353_26185at 5762.524 kb on + strand, within AO353_26185at 5762.524 kb on + strand, within AO353_26185at 5762.524 kb on + strand, within AO353_26185at 5762.524 kb on + strand, within AO353_26185at 5762.524 kb on + strand, within AO353_26185at 5762.525 kb on - strand, within AO353_26185at 5762.525 kb on - strand, within AO353_26185at 5762.525 kb on - strand, within AO353_26185at 5762.525 kb on - strand, within AO353_26185at 5762.525 kb on - strand, within AO353_26185at 5762.527 kb on + strand, within AO353_26185at 5762.527 kb on + strand, within AO353_26185at 5762.527 kb on + strand, within AO353_26185at 5762.527 kb on + strand, within AO353_26185at 5762.527 kb on + strand, within AO353_26185at 5762.528 kb on - strand, within AO353_26185at 5762.528 kb on - strand, within AO353_26185at 5762.528 kb on - strand, within AO353_26185at 5762.528 kb on - strand, within AO353_26185at 5762.528 kb on - strand, within AO353_26185at 5762.528 kb on - strand, within AO353_26185at 5762.533 kb on + strand, within AO353_26185at 5762.534 kb on - strand, within AO353_26185at 5762.793 kb on - strand, within AO353_26185at 5762.877 kb on - strand, within AO353_26185at 5762.992 kb on + strand, within AO353_26185at 5762.992 kb on + strand, within AO353_26185at 5762.992 kb on + strand, within AO353_26185at 5762.992 kb on + strand, within AO353_26185at 5762.992 kb on + strand, within AO353_26185at 5762.993 kb on - strand, within AO353_26185at 5762.993 kb on - strand, within AO353_26185at 5762.993 kb on - strand, within AO353_26185at 5763.466 kb on + strand, within AO353_26190at 5763.467 kb on - strand, within AO353_26190at 5763.546 kb on + strand, within AO353_26190at 5763.577 kb on + strand, within AO353_26190at 5763.605 kb on + strand, within AO353_26190at 5763.605 kb on + strand, within AO353_26190at 5763.605 kb on + strand, within AO353_26190at 5763.605 kb on + strand, within AO353_26190at 5763.605 kb on + strand, within AO353_26190at 5763.606 kb on - strand, within AO353_26190at 5763.714 kb on + strandat 5763.714 kb on + strandat 5763.714 kb on + strandat 5763.714 kb on + strandat 5763.734 kb on + strandat 5763.734 kb on + strandat 5763.799 kb on - strand, within AO353_26195at 5763.963 kb on + strand, within AO353_26195at 5763.981 kb on + strand, within AO353_26195at 5764.014 kb on - strand, within AO353_26195at 5764.014 kb on - strand, within AO353_26195at 5764.014 kb on - strand, within AO353_26195at 5764.118 kb on + strandat 5764.118 kb on + strandat 5764.220 kb on + strand, within AO353_26200at 5764.220 kb on + strand, within AO353_26200at 5764.221 kb on - strand, within AO353_26200at 5764.221 kb on - strand, within AO353_26200at 5764.221 kb on - strand, within AO353_26200at 5764.229 kb on + strand, within AO353_26200at 5764.230 kb on - strand, within AO353_26200at 5764.230 kb on - strand, within AO353_26200at 5764.230 kb on - strand, within AO353_26200at 5764.233 kb on + strand, within AO353_26200at 5764.234 kb on - strand, within AO353_26200at 5764.234 kb on - strand, within AO353_26200at 5764.234 kb on - strand, within AO353_26200at 5764.313 kb on + strand, within AO353_26200at 5764.313 kb on + strand, within AO353_26200at 5764.314 kb on - strand, within AO353_26200at 5764.314 kb on - strand, within AO353_26200at 5764.314 kb on - strand, within AO353_26200at 5764.368 kb on + strand, within AO353_26200at 5764.369 kb on - strand, within AO353_26200at 5764.517 kb on + strand, within AO353_26200at 5764.518 kb on - strand, within AO353_26200at 5764.530 kb on + strand, within AO353_26200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.25 vol%
remove
5,762,492 + AO353_26185 0.72 +0.1
5,762,492 + AO353_26185 0.72 +0.3
5,762,492 + AO353_26185 0.72 +0.3
5,762,492 + AO353_26185 0.72 -0.7
5,762,492 + AO353_26185 0.72 +0.8
5,762,492 + AO353_26185 0.72 -0.4
5,762,493 - AO353_26185 0.72 -0.1
5,762,493 - AO353_26185 0.72 -0.7
5,762,493 - AO353_26185 0.72 +0.6
5,762,524 + AO353_26185 0.72 +0.2
5,762,524 + AO353_26185 0.72 -0.5
5,762,524 + AO353_26185 0.72 -0.5
5,762,524 + AO353_26185 0.72 +1.2
5,762,524 + AO353_26185 0.72 -0.1
5,762,524 + AO353_26185 0.72 +1.0
5,762,525 - AO353_26185 0.73 +1.5
5,762,525 - AO353_26185 0.73 +0.4
5,762,525 - AO353_26185 0.73 +0.9
5,762,525 - AO353_26185 0.73 -1.6
5,762,525 - AO353_26185 0.73 +1.9
5,762,527 + AO353_26185 0.73 -0.4
5,762,527 + AO353_26185 0.73 +1.0
5,762,527 + AO353_26185 0.73 -0.4
5,762,527 + AO353_26185 0.73 +2.1
5,762,527 + AO353_26185 0.73 +0.0
5,762,528 - AO353_26185 0.73 -1.7
5,762,528 - AO353_26185 0.73 +0.6
5,762,528 - AO353_26185 0.73 +0.0
5,762,528 - AO353_26185 0.73 +1.2
5,762,528 - AO353_26185 0.73 -2.2
5,762,528 - AO353_26185 0.73 +0.4
5,762,533 + AO353_26185 0.73 -1.2
5,762,534 - AO353_26185 0.73 +0.6
5,762,793 - AO353_26185 0.81 -2.0
5,762,877 - AO353_26185 0.83 +0.1
5,762,992 + AO353_26185 0.87 -0.7
5,762,992 + AO353_26185 0.87 +0.6
5,762,992 + AO353_26185 0.87 +2.6
5,762,992 + AO353_26185 0.87 -0.4
5,762,992 + AO353_26185 0.87 -0.1
5,762,993 - AO353_26185 0.87 -2.4
5,762,993 - AO353_26185 0.87 -1.0
5,762,993 - AO353_26185 0.87 +0.7
5,763,466 + AO353_26190 0.19 -0.1
5,763,467 - AO353_26190 0.20 -0.9
5,763,546 + AO353_26190 0.50 -1.0
5,763,577 + AO353_26190 0.62 -1.4
5,763,605 + AO353_26190 0.73 -0.4
5,763,605 + AO353_26190 0.73 +2.6
5,763,605 + AO353_26190 0.73 -2.7
5,763,605 + AO353_26190 0.73 -0.7
5,763,605 + AO353_26190 0.73 -1.4
5,763,606 - AO353_26190 0.74 +0.0
5,763,714 + +1.2
5,763,714 + +0.8
5,763,714 + -1.4
5,763,714 + -1.2
5,763,734 + +0.1
5,763,734 + +0.0
5,763,799 - AO353_26195 0.17 -0.7
5,763,963 + AO353_26195 0.60 -2.0
5,763,981 + AO353_26195 0.65 -0.3
5,764,014 - AO353_26195 0.74 -1.4
5,764,014 - AO353_26195 0.74 -3.2
5,764,014 - AO353_26195 0.74 +2.4
5,764,118 + +0.6
5,764,118 + -0.7
5,764,220 + AO353_26200 0.16 +0.1
5,764,220 + AO353_26200 0.16 +0.6
5,764,221 - AO353_26200 0.16 +0.9
5,764,221 - AO353_26200 0.16 +0.2
5,764,221 - AO353_26200 0.16 -1.0
5,764,229 + AO353_26200 0.17 +0.1
5,764,230 - AO353_26200 0.17 -0.2
5,764,230 - AO353_26200 0.17 -2.6
5,764,230 - AO353_26200 0.17 -0.7
5,764,233 + AO353_26200 0.18 -0.4
5,764,234 - AO353_26200 0.18 +1.6
5,764,234 - AO353_26200 0.18 +1.1
5,764,234 - AO353_26200 0.18 +1.0
5,764,313 + AO353_26200 0.30 -0.8
5,764,313 + AO353_26200 0.30 +0.7
5,764,314 - AO353_26200 0.30 +1.1
5,764,314 - AO353_26200 0.30 -0.4
5,764,314 - AO353_26200 0.30 -1.0
5,764,368 + AO353_26200 0.38 +0.6
5,764,369 - AO353_26200 0.39 -0.7
5,764,517 + AO353_26200 0.61 +1.7
5,764,518 - AO353_26200 0.61 +1.6
5,764,530 + AO353_26200 0.63 +0.0

Or see this region's nucleotide sequence