Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25705

Experiment: Furfuryl Alcohol 0.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25695 and AO353_25700 are separated by 83 nucleotidesAO353_25700 and AO353_25705 overlap by 20 nucleotidesAO353_25705 and AO353_25710 are separated by 249 nucleotides AO353_25695: AO353_25695 - AMP-binding protein, at 5,665,982 to 5,667,646 _25695 AO353_25700: AO353_25700 - hypothetical protein, at 5,667,730 to 5,667,948 _25700 AO353_25705: AO353_25705 - AraC family transcriptional regulator, at 5,667,929 to 5,668,948 _25705 AO353_25710: AO353_25710 - iron transporter, at 5,669,198 to 5,670,049 _25710 Position (kb) 5667 5668 5669Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5666.988 kb on + strand, within AO353_25695at 5666.988 kb on + strand, within AO353_25695at 5666.989 kb on - strand, within AO353_25695at 5667.117 kb on + strand, within AO353_25695at 5667.117 kb on + strand, within AO353_25695at 5667.117 kb on + strand, within AO353_25695at 5667.118 kb on - strand, within AO353_25695at 5667.118 kb on - strand, within AO353_25695at 5667.321 kb on + strand, within AO353_25695at 5667.474 kb on + strand, within AO353_25695at 5667.474 kb on + strand, within AO353_25695at 5667.474 kb on + strand, within AO353_25695at 5667.474 kb on + strand, within AO353_25695at 5667.475 kb on - strandat 5667.475 kb on - strand, within AO353_25695at 5667.475 kb on - strand, within AO353_25695at 5667.475 kb on - strand, within AO353_25695at 5667.609 kb on + strandat 5667.610 kb on - strandat 5667.663 kb on + strandat 5667.672 kb on + strandat 5667.672 kb on + strandat 5667.704 kb on - strandat 5667.821 kb on + strand, within AO353_25700at 5667.822 kb on - strand, within AO353_25700at 5667.851 kb on - strand, within AO353_25700at 5667.864 kb on + strand, within AO353_25700at 5667.864 kb on + strand, within AO353_25700at 5667.930 kb on + strandat 5667.930 kb on + strandat 5667.930 kb on + strandat 5667.930 kb on + strandat 5667.930 kb on + strandat 5667.930 kb on + strandat 5667.930 kb on + strandat 5667.931 kb on - strandat 5667.931 kb on - strandat 5667.931 kb on - strandat 5667.931 kb on - strandat 5667.931 kb on - strandat 5667.931 kb on - strandat 5668.005 kb on + strandat 5668.005 kb on + strandat 5668.005 kb on + strandat 5668.005 kb on + strandat 5668.006 kb on - strandat 5668.122 kb on + strand, within AO353_25705at 5668.122 kb on + strand, within AO353_25705at 5668.123 kb on - strand, within AO353_25705at 5668.123 kb on - strand, within AO353_25705at 5668.123 kb on - strand, within AO353_25705at 5668.123 kb on - strand, within AO353_25705at 5668.123 kb on - strand, within AO353_25705at 5668.123 kb on - strand, within AO353_25705at 5668.273 kb on - strand, within AO353_25705at 5668.273 kb on - strand, within AO353_25705at 5668.379 kb on - strand, within AO353_25705at 5668.379 kb on - strand, within AO353_25705at 5668.420 kb on + strand, within AO353_25705at 5668.420 kb on + strand, within AO353_25705at 5668.420 kb on + strand, within AO353_25705at 5668.420 kb on + strand, within AO353_25705at 5668.420 kb on + strand, within AO353_25705at 5668.420 kb on + strand, within AO353_25705at 5668.420 kb on + strand, within AO353_25705at 5668.420 kb on + strand, within AO353_25705at 5668.421 kb on - strand, within AO353_25705at 5668.421 kb on - strand, within AO353_25705at 5668.421 kb on - strand, within AO353_25705at 5668.421 kb on - strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.422 kb on + strand, within AO353_25705at 5668.423 kb on - strand, within AO353_25705at 5668.423 kb on - strand, within AO353_25705at 5668.423 kb on - strand, within AO353_25705at 5668.423 kb on - strand, within AO353_25705at 5668.423 kb on - strand, within AO353_25705at 5668.423 kb on - strand, within AO353_25705at 5668.423 kb on - strand, within AO353_25705at 5668.524 kb on + strand, within AO353_25705at 5668.524 kb on + strand, within AO353_25705at 5668.525 kb on - strand, within AO353_25705at 5668.533 kb on + strand, within AO353_25705at 5668.533 kb on + strand, within AO353_25705at 5668.533 kb on + strand, within AO353_25705at 5668.533 kb on + strand, within AO353_25705at 5668.534 kb on - strand, within AO353_25705at 5668.534 kb on - strand, within AO353_25705at 5668.534 kb on - strand, within AO353_25705at 5668.534 kb on - strand, within AO353_25705at 5668.534 kb on - strand, within AO353_25705at 5668.534 kb on - strand, within AO353_25705at 5668.534 kb on - strand, within AO353_25705at 5668.794 kb on + strand, within AO353_25705at 5668.795 kb on - strand, within AO353_25705at 5668.795 kb on - strand, within AO353_25705at 5668.988 kb on + strandat 5669.008 kb on + strandat 5669.053 kb on + strandat 5669.053 kb on + strandat 5669.053 kb on + strandat 5669.054 kb on - strandat 5669.054 kb on - strandat 5669.054 kb on - strandat 5669.054 kb on - strandat 5669.092 kb on + strandat 5669.092 kb on + strandat 5669.093 kb on - strandat 5669.093 kb on - strandat 5669.093 kb on - strandat 5669.180 kb on + strandat 5669.270 kb on + strandat 5669.270 kb on + strandat 5669.270 kb on + strandat 5669.270 kb on + strandat 5669.271 kb on - strandat 5669.271 kb on - strandat 5669.271 kb on - strandat 5669.271 kb on - strandat 5669.699 kb on - strandat 5669.699 kb on - strand, within AO353_25710at 5669.702 kb on + strand, within AO353_25710at 5669.702 kb on + strand, within AO353_25710at 5669.702 kb on + strand, within AO353_25710at 5669.703 kb on - strand, within AO353_25710at 5669.703 kb on - strand, within AO353_25710at 5669.948 kb on + strand, within AO353_25710at 5669.948 kb on + strand, within AO353_25710

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.25 vol%
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5,666,988 + AO353_25695 0.60 -0.4
5,666,988 + AO353_25695 0.60 +0.2
5,666,989 - AO353_25695 0.60 +0.3
5,667,117 + AO353_25695 0.68 +0.0
5,667,117 + AO353_25695 0.68 -1.4
5,667,117 + AO353_25695 0.68 +0.6
5,667,118 - AO353_25695 0.68 -1.7
5,667,118 - AO353_25695 0.68 +0.3
5,667,321 + AO353_25695 0.80 -1.7
5,667,474 + AO353_25695 0.90 -0.4
5,667,474 + AO353_25695 0.90 -0.4
5,667,474 + AO353_25695 0.90 +0.1
5,667,474 + AO353_25695 0.90 -2.1
5,667,475 - +0.6
5,667,475 - AO353_25695 0.90 -0.6
5,667,475 - AO353_25695 0.90 -2.2
5,667,475 - AO353_25695 0.90 -0.3
5,667,609 + -0.6
5,667,610 - +1.8
5,667,663 + -1.9
5,667,672 + -0.1
5,667,672 + -1.0
5,667,704 - +1.3
5,667,821 + AO353_25700 0.42 -1.7
5,667,822 - AO353_25700 0.42 -0.3
5,667,851 - AO353_25700 0.55 -0.5
5,667,864 + AO353_25700 0.61 -0.3
5,667,864 + AO353_25700 0.61 -0.6
5,667,930 + +0.4
5,667,930 + -1.2
5,667,930 + -0.3
5,667,930 + +0.6
5,667,930 + -1.0
5,667,930 + +0.2
5,667,930 + +0.3
5,667,931 - +0.1
5,667,931 - +1.4
5,667,931 - +0.4
5,667,931 - +0.1
5,667,931 - +0.8
5,667,931 - -0.8
5,668,005 + -1.2
5,668,005 + +2.9
5,668,005 + +0.0
5,668,005 + +1.9
5,668,006 - +1.6
5,668,122 + AO353_25705 0.19 -0.4
5,668,122 + AO353_25705 0.19 -1.4
5,668,123 - AO353_25705 0.19 +1.1
5,668,123 - AO353_25705 0.19 +0.6
5,668,123 - AO353_25705 0.19 +0.1
5,668,123 - AO353_25705 0.19 +1.2
5,668,123 - AO353_25705 0.19 -0.6
5,668,123 - AO353_25705 0.19 -1.0
5,668,273 - AO353_25705 0.34 -0.4
5,668,273 - AO353_25705 0.34 +0.3
5,668,379 - AO353_25705 0.44 +0.6
5,668,379 - AO353_25705 0.44 -1.4
5,668,420 + AO353_25705 0.48 -0.8
5,668,420 + AO353_25705 0.48 +0.0
5,668,420 + AO353_25705 0.48 -1.4
5,668,420 + AO353_25705 0.48 +1.0
5,668,420 + AO353_25705 0.48 +0.8
5,668,420 + AO353_25705 0.48 -0.9
5,668,420 + AO353_25705 0.48 -2.7
5,668,420 + AO353_25705 0.48 +0.0
5,668,421 - AO353_25705 0.48 +0.0
5,668,421 - AO353_25705 0.48 -0.3
5,668,421 - AO353_25705 0.48 +0.2
5,668,421 - AO353_25705 0.48 +0.4
5,668,422 + AO353_25705 0.48 +0.6
5,668,422 + AO353_25705 0.48 -1.6
5,668,422 + AO353_25705 0.48 +0.6
5,668,422 + AO353_25705 0.48 +0.0
5,668,422 + AO353_25705 0.48 +0.4
5,668,422 + AO353_25705 0.48 -0.4
5,668,422 + AO353_25705 0.48 -0.2
5,668,422 + AO353_25705 0.48 -0.4
5,668,422 + AO353_25705 0.48 +0.4
5,668,423 - AO353_25705 0.48 +0.1
5,668,423 - AO353_25705 0.48 -1.0
5,668,423 - AO353_25705 0.48 -0.4
5,668,423 - AO353_25705 0.48 -0.2
5,668,423 - AO353_25705 0.48 -0.4
5,668,423 - AO353_25705 0.48 -2.2
5,668,423 - AO353_25705 0.48 +0.1
5,668,524 + AO353_25705 0.58 -1.2
5,668,524 + AO353_25705 0.58 -0.7
5,668,525 - AO353_25705 0.58 -0.7
5,668,533 + AO353_25705 0.59 +0.3
5,668,533 + AO353_25705 0.59 -1.7
5,668,533 + AO353_25705 0.59 -0.9
5,668,533 + AO353_25705 0.59 -0.2
5,668,534 - AO353_25705 0.59 -1.4
5,668,534 - AO353_25705 0.59 +0.7
5,668,534 - AO353_25705 0.59 +0.4
5,668,534 - AO353_25705 0.59 +0.3
5,668,534 - AO353_25705 0.59 -1.0
5,668,534 - AO353_25705 0.59 +0.6
5,668,534 - AO353_25705 0.59 +1.3
5,668,794 + AO353_25705 0.85 +0.3
5,668,795 - AO353_25705 0.85 -0.4
5,668,795 - AO353_25705 0.85 -0.3
5,668,988 + +0.6
5,669,008 + -1.6
5,669,053 + -1.6
5,669,053 + +0.2
5,669,053 + -0.1
5,669,054 - +0.6
5,669,054 - +0.6
5,669,054 - +0.4
5,669,054 - -0.8
5,669,092 + +0.6
5,669,092 + -0.4
5,669,093 - +0.9
5,669,093 - +0.6
5,669,093 - +0.3
5,669,180 + -0.4
5,669,270 + +0.3
5,669,270 + -0.3
5,669,270 + -0.5
5,669,270 + -0.6
5,669,271 - +0.6
5,669,271 - -0.4
5,669,271 - +0.8
5,669,271 - +0.6
5,669,699 - +0.6
5,669,699 - AO353_25710 0.59 +0.6
5,669,702 + AO353_25710 0.59 -0.7
5,669,702 + AO353_25710 0.59 +1.4
5,669,702 + AO353_25710 0.59 +1.0
5,669,703 - AO353_25710 0.59 -0.8
5,669,703 - AO353_25710 0.59 +1.9
5,669,948 + AO353_25710 0.88 -0.3
5,669,948 + AO353_25710 0.88 +0.9

Or see this region's nucleotide sequence